mRNA_M-pyrifera_M_contig108282.1762.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108282.1762.1
Unique NamemRNA_M-pyrifera_M_contig108282.1762.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108282.1762.1 vs. uniprot
Match: A0A7C7WBX3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7WBX3_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 1.110e-23
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    4 DTTRFYCTSCWTLLFGDHPFYDKRILASLIASYREFEGLSDVIRMPPQARHFLKDLSDEQRAALPAWTGDPAHVYAGAAEVLLENFPAMKAAGGEGRAMNAQILLQ 321
            DTTRFYC  CWT L  DH  Y  +++ + + ++  FEGL+    +P QARHFLKDL+ EQRAALP+++G    VY  AAE  L++   + A GG G  MN Q+L +
Sbjct:   81 DTTRFYCKDCWTCLIADHAVYLAKMVITQVVNFTGFEGLTGADLIPLQARHFLKDLTAEQRAALPSFSGAAECVYDSAAENFLDSMTEILAKGGTGE-MNLQVLAE 185
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108282.1762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C7WBX3_9GAMM1.110e-2347.17Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108282contigM-pyrifera_M_contig108282:13..333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.6912465-CDS-M-pyrifera_M_contig108282:12..3331622815592.6912465-CDS-M-pyrifera_M_contig108282:12..333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108282 13..333 +
1692277478.4623945-CDS-M-pyrifera_M_contig108282:12..3331692277478.4623945-CDS-M-pyrifera_M_contig108282:12..333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108282 13..333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108282.1762.1prot_M-pyrifera_M_contig108282.1762.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108282 13..333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108282.1762.1

>prot_M-pyrifera_M_contig108282.1762.1 ID=prot_M-pyrifera_M_contig108282.1762.1|Name=mRNA_M-pyrifera_M_contig108282.1762.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
ADTTRFYCTSCWTLLFGDHPFYDKRILASLIASYREFEGLSDVIRMPPQA
RHFLKDLSDEQRAALPAWTGDPAHVYAGAAEVLLENFPAMKAAGGEGRAM
NAQILLQ
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mRNA from alignment at M-pyrifera_M_contig108282:13..333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108282.1762.1 ID=mRNA_M-pyrifera_M_contig108282.1762.1|Name=mRNA_M-pyrifera_M_contig108282.1762.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig108282:13..333+ (Macrocystis pyrifera P11B4 male)
GCGGATACAACCCGGTTTTACTGCACGTCGTGCTGGACCTTGCTGTTCGG
TGATCATCCGTTCTACGACAAGCGGATCCTCGCGTCGCTGATCGCGAGTT
ACCGCGAGTTCGAGGGGCTGTCCGACGTCATCCGCATGCCACCGCAGGCG
CGACATTTCCTGAAAGATTTAAGCGACGAACAACGCGCCGCGTTGCCGGC
GTGGACCGGCGACCCGGCGCACGTTTACGCCGGTGCGGCGGAGGTGTTGC
TGGAGAATTTTCCGGCGATGAAGGCCGCGGGCGGAGAAGGGCGCGCCATG
AATGCGCAGATCCTGCTGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108282:13..333+

>mRNA_M-pyrifera_M_contig108282.1762.1 ID=mRNA_M-pyrifera_M_contig108282.1762.1|Name=mRNA_M-pyrifera_M_contig108282.1762.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig108282:13..333+ (Macrocystis pyrifera P11B4 male)
GCGGATACAACCCGGTTTTACTGCACGTCGTGCTGGACCTTGCTGTTCGG
TGATCATCCGTTCTACGACAAGCGGATCCTCGCGTCGCTGATCGCGAGTT
ACCGCGAGTTCGAGGGGCTGTCCGACGTCATCCGCATGCCACCGCAGGCG
CGACATTTCCTGAAAGATTTAAGCGACGAACAACGCGCCGCGTTGCCGGC
GTGGACCGGCGACCCGGCGCACGTTTACGCCGGTGCGGCGGAGGTGTTGC
TGGAGAATTTTCCGGCGATGAAGGCCGCGGGCGGAGAAGGGCGCGCCATG
AATGCGCAGATCCTGCTGCAGGCGGATACAACCCGGTTTTACTGCACGTC
GTGCTGGACCTTGCTGTTCGGTGATCATCCGTTCTACGACAAGCGGATCC
TCGCGTCGCTGATCGCGAGTTACCGCGAGTTCGAGGGGCTGTCCGACGTC
ATCCGCATGCCACCGCAGGCGCGACATTTCCTGAAAGATTTAAGCGACGA
ACAACGCGCCGCGTTGCCGGCGTGGACCGGCGACCCGGCGCACGTTTACG
CCGGTGCGGCGGAGGTGTTGCTGGAGAATTTTCCGGCGATGAAGGCCGCG
GGCGGAGAAGGGCGCGCCATGAATGCGCAGATCCTGCTGCAG
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