mRNA_M-pyrifera_M_contig108280.1760.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108280.1760.1
Unique NamemRNA_M-pyrifera_M_contig108280.1760.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108280.1760.1 vs. uniprot
Match: A0A8B8HSX7_9NEOP (rho GTPase-activating protein 4-like isoform X1 n=7 Tax=Vanessa TaxID=42274 RepID=A0A8B8HSX7_9NEOP)

HSP 1 Score: 60.1 bits (144), Expect = 5.180e-8
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:    1 IFLLSGKPADIEPVMKMYESGVEVDLDL--SPDPFMVCGVLLESLRRLPGAIVPPAV---MLEIQGLRDQGKFTAANVGGILSELPVPNILLLKHMIAFLCRVTYHADHNRMTAARLS 339
            +F +SG   +++ +   +E G +   D+  + D   VCG+L   LR L   ++PP +   +L +  L D   F    +   L+ LP+P++L+L+++ AFL  +T HAD N M A  L+
Sbjct:  531 VFRVSGSQVEMQALRAAFERGEDPLADVCDASDINSVCGLLKLYLRELRPPLLPPQLQERLLRVAALPDDASFVR-RLRDTLAALPLPSLLVLRYLFAFLAHLTEHADRNMMDAWNLA 647
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BLAST of mRNA_M-pyrifera_M_contig108280.1760.1 vs. uniprot
Match: A0A2H1WCD0_SPOFR (SFRICE_034308 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WCD0_SPOFR)

HSP 1 Score: 59.3 bits (142), Expect = 9.090e-8
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:    1 IFLLSGKPADIEPVMKMYESGVE--VDLDLSPDPFMVCGVLLESLRRLPGAIVPPAV---MLEIQGLRDQGKFTAANVGGILSELPVPNILLLKHMIAFLCRVTYHADHNRMTAARLS 339
            IF +SG   +++ +   +E G +    +  + D   VCG+L   LR L   ++PPA+   +L +  L D   F    +   L+ LP+P +L+L+++ AFL  +  HA+HN M A  L+
Sbjct:  131 IFRVSGSQVEMQALRAAFERGEDPLAGVRDASDMNSVCGLLKLYLRELRPPLLPPALQERLLRVAALPDDAAFVR-RLRATLAALPLPAVLVLRYLFAFLAHLAEHAEHNMMDAWNLA 247
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BLAST of mRNA_M-pyrifera_M_contig108280.1760.1 vs. uniprot
Match: A0A8N7VH33_SPOFR (SLIT-ROBO Rho GTPase-activating protein 1-like isoform X1 n=2 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A8N7VH33_SPOFR)

HSP 1 Score: 59.3 bits (142), Expect = 9.390e-8
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:    1 IFLLSGKPADIEPVMKMYESGVE--VDLDLSPDPFMVCGVLLESLRRLPGAIVPPAV---MLEIQGLRDQGKFTAANVGGILSELPVPNILLLKHMIAFLCRVTYHADHNRMTAARLS 339
            IF +SG   +++ +   +E G +    +  + D   VCG+L   LR L   ++PPA+   +L +  L D   F    +   L+ LP+P +L+L+++ AFL  +  HA+HN M A  L+
Sbjct:  301 IFRVSGSQVEMQALRAAFERGEDPLAGVRDASDMNSVCGLLKLYLRELRPPLLPPALQERLLRVAALPDDAAFVR-RLRATLAALPLPAVLVLRYLFAFLAHLAEHAEHNMMDAWNLA 417
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BLAST of mRNA_M-pyrifera_M_contig108280.1760.1 vs. uniprot
Match: A0A8J9VTD0_9NEOP ((lesser marbled fritillary) hypothetical protein (Fragment) n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9VTD0_9NEOP)

HSP 1 Score: 58.9 bits (141), Expect = 1.320e-7
Identity = 36/118 (30.51%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 IFLLSGKPADIEPVMKMYESGVE--VDLDLSPDPFMVCGVLLESLRRLPGAIVPPAV---MLEIQGLRDQGKFTAANVGGILSELPVPNILLLKHMIAFLCRVTYHADHNRMTAARLS 339
            +F +SG   +++ +   +E G +    +  + D   VCG+L   LR L   ++PP +   +L +  LRD   F A  +   L+ LP+P++L+L+++ AFL  +T H++ N M A  L+
Sbjct:  603 VFRVSGSQVEMQALRAAFERGEDPLAGVRDASDINSVCGLLKLYLRELRPPLLPPQLQERLLRVAALRDDAAF-ARRLRDTLAALPLPSLLVLRYLFAFLAHLTEHSERNMMDAWNLA 719
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BLAST of mRNA_M-pyrifera_M_contig108280.1760.1 vs. uniprot
Match: UPI001E686EBA (rho GTPase-activating protein 4-like isoform X2 n=2 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E686EBA)

HSP 1 Score: 58.2 bits (139), Expect = 2.430e-7
Identity = 39/118 (33.05%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:    1 IFLLSGKPADIEPVMKMYESGVE--VDLDLSPDPFMVCGVLLESLRRLPGAIVPPAV---MLEIQGLRDQGKFTAANVGGILSELPVPNILLLKHMIAFLCRVTYHADHNRMTAARLS 339
            IF +SG   ++  +   +E G +       + D   VCG+L   LR L   ++PP +   +L +  L D   F A  +   LS LPVP +L+L+++ AFL  +  HA HN M A  L+
Sbjct:  498 IFRVSGSQTEMAALRAAFERGADPLAGARDASDINSVCGLLKLYLRELRPPLLPPQLQERLLRVAALPDDHTF-ARRLRDTLSALPVPQLLVLRYLFAFLAHLAEHAQHNMMDAWNLA 614
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BLAST of mRNA_M-pyrifera_M_contig108280.1760.1 vs. uniprot
Match: UPI0015691A88 (rho GTPase-activating protein 4-like n=2 Tax=Maniola TaxID=111919 RepID=UPI0015691A88)

HSP 1 Score: 57.8 bits (138), Expect = 3.350e-7
Identity = 38/118 (32.20%), Postives = 60/118 (50.85%), Query Frame = 1 
Query:    1 IFLLSGKPADIEPVMKMYESGVE--VDLDLSPDPFMVCGVLLESLRRLPGAIVPPAV---MLEIQGLRDQGKFTAANVGGILSELPVPNILLLKHMIAFLCRVTYHADHNRMTAARLS 339
            +F +SG   ++  +   +E G +       + D   VCG+L   LR L   ++PP +   +L +  L D   F A  +   LS LPVP +L+L+++ AFL  +  HA HN M A  L+
Sbjct:  517 VFRVSGSQTEMAALRAAFERGADPLAGARDASDINSVCGLLKLYLRELRPPLLPPQLQERLLRVAALPDDHTF-ARRLRDTLSALPVPQLLVLRYLFAFLAHLAEHAQHNMMDAWNLA 633
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BLAST of mRNA_M-pyrifera_M_contig108280.1760.1 vs. uniprot
Match: UPI001E272B52 (rho GTPase-activating protein 4-like n=1 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E272B52)

HSP 1 Score: 57.0 bits (136), Expect = 6.080e-7
Identity = 36/118 (30.51%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:    1 IFLLSGKPADIEPVMKMYESGVE--VDLDLSPDPFMVCGVLLESLRRLPGAIVPPAV---MLEIQGLRDQGKFTAANVGGILSELPVPNILLLKHMIAFLCRVTYHADHNRMTAARLS 339
            +F +SG   +++ +   +E G +    +  + D   VCG+L   LR L   ++PP +   +L +  L D   F A  +   L+ LP+P++L+L+++ AFL  +  HAD N M A  L+
Sbjct:  510 VFRVSGSQVEMQALRAAFERGEDPLAGVRDASDINSVCGLLKLYLRELRPPLLPPQLQERLLRVAALPDDAAF-ARRLRDTLAALPLPSLLVLRYLFAFLAHLAEHADRNMMDAWNLA 626
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BLAST of mRNA_M-pyrifera_M_contig108280.1760.1 vs. uniprot
Match: UPI001FA07907 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001FA07907)

HSP 1 Score: 54.3 bits (129), Expect = 5.340e-6
Identity = 36/118 (30.51%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:    1 IFLLSGKPADIEPVMKMYESGVE--VDLDLSPDPFMVCGVLLESLRRLPGAIVPPAV---MLEIQGLRDQGKFTAANVGGILSELPVPNILLLKHMIAFLCRVTYHADHNRMTAARLS 339
            IF +SG   +++ +   +E G +    +  + D   VCG+L   LR +   ++ PA+   +L    L D   F   +    L+ LP+P +L+L+++ AFL  +  HADHN M A  L+
Sbjct:  340 IFRVSGSQVEMQALRAAFERGEDPLAGVRDASDMNSVCGLLKLYLREVRPPLLAPALQERLLAAAALADDAAFVRRSRAA-LAALPLPALLVLRYLFAFLAHLAEHADHNMMDAWNLA 456
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BLAST of mRNA_M-pyrifera_M_contig108280.1760.1 vs. uniprot
Match: A0A8J2R9B7_9NEOP ((African queen) hypothetical protein n=1 Tax=Danaus chrysippus TaxID=151541 RepID=A0A8J2R9B7_9NEOP)

HSP 1 Score: 53.9 bits (128), Expect = 6.950e-6
Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:    1 IFLLSGKPADIEPVMKMYESGVE--VDLDLSPDPFMVCGVLLESLRRLPGAIVPPAV---MLEIQGLRDQGKFTAANVGGILSELPVPNILLLKHMIAFLCRVTYHADHNRMTAARLS 339
            +F +SG   +++ +   +E G +    +  + D   VCG+L   LR L   ++PP +   +L +  L D   F    +   L  LP+P++L+L+++ AFL  +  H+D N M A  L+
Sbjct:  261 VFRVSGSQVEMQALRAAFERGEDPLAGVRDASDINSVCGLLKLYLRELRPPLLPPQLQERLLRVAALPDDAAFVR-RLRDTLGSLPLPSLLVLRYLFAFLAHLADHSDRNMMDAWNLA 377
[Close]
BLAST of mRNA_M-pyrifera_M_contig108280.1760.1 vs. uniprot
Match: A0A212F2J5_DANPL (SLIT-ROBO Rho GTPase-activating protein 1 n=1 Tax=Danaus plexippus plexippus TaxID=278856 RepID=A0A212F2J5_DANPL)

HSP 1 Score: 53.9 bits (128), Expect = 7.280e-6
Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:    1 IFLLSGKPADIEPVMKMYESGVE--VDLDLSPDPFMVCGVLLESLRRLPGAIVPPAV---MLEIQGLRDQGKFTAANVGGILSELPVPNILLLKHMIAFLCRVTYHADHNRMTAARLS 339
            +F +SG   +++ +   +E G +    +  + D   VCG+L   LR L   ++PP +   +L +  L D   F    +   L  LP+P++L+L+++ AFL  +  H+D N M A  L+
Sbjct:  534 VFRVSGSQVEMQSLRAAFERGEDPLAGVRDASDINSVCGLLKLYLRELRPPLLPPQLQERLLRVAALPDDAAFVR-RLRDTLGSLPLPSLLVLRYLFAFLAHLADHSDRNMMDAWNLA 650
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108280.1760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A8B8HSX7_9NEOP5.180e-831.36rho GTPase-activating protein 4-like isoform X1 n=... [more]
A0A2H1WCD0_SPOFR9.090e-831.36SFRICE_034308 (Fragment) n=1 Tax=Spodoptera frugip... [more]
A0A8N7VH33_SPOFR9.390e-831.36SLIT-ROBO Rho GTPase-activating protein 1-like iso... [more]
A0A8J9VTD0_9NEOP1.320e-730.51(lesser marbled fritillary) hypothetical protein (... [more]
UPI001E686EBA2.430e-733.05rho GTPase-activating protein 4-like isoform X2 n=... [more]
UPI0015691A883.350e-732.20rho GTPase-activating protein 4-like n=2 Tax=Manio... [more]
UPI001E272B526.080e-730.51rho GTPase-activating protein 4-like n=1 Tax=Melit... [more]
UPI001FA079075.340e-630.51Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A8J2R9B7_9NEOP6.950e-628.81(African queen) hypothetical protein n=1 Tax=Danau... [more]
A0A212F2J5_DANPL7.280e-628.81SLIT-ROBO Rho GTPase-activating protein 1 n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108280contigM-pyrifera_M_contig108280:233..604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score69.7
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog78898.MVEG_03239T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mortierella verticillata NRRL 6337
EggNOG OGs1GVC6@112252,3A6XF@33154,3P5WA@4751,KOG4269@1,KOG4269@2759
COG Functional cat.T
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.5994785-CDS-M-pyrifera_M_contig108280:232..6041622815592.5994785-CDS-M-pyrifera_M_contig108280:232..604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108280 233..604 +
1692277478.4257755-CDS-M-pyrifera_M_contig108280:232..6041692277478.4257755-CDS-M-pyrifera_M_contig108280:232..604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108280 233..604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108280.1760.1prot_M-pyrifera_M_contig108280.1760.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108280 233..604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108280.1760.1

>prot_M-pyrifera_M_contig108280.1760.1 ID=prot_M-pyrifera_M_contig108280.1760.1|Name=mRNA_M-pyrifera_M_contig108280.1760.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
IFLLSGKPADIEPVMKMYESGVEVDLDLSPDPFMVCGVLLESLRRLPGAI
VPPAVMLEIQGLRDQGKFTAANVGGILSELPVPNILLLKHMIAFLCRVTY
HADHNRMTAARLSTIFATLTVHES
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mRNA from alignment at M-pyrifera_M_contig108280:233..604+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108280.1760.1 ID=mRNA_M-pyrifera_M_contig108280.1760.1|Name=mRNA_M-pyrifera_M_contig108280.1760.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig108280:233..604+ (Macrocystis pyrifera P11B4 male)
ATTTTCCTCCTGTCAGGAAAGCCTGCCGACATCGAGCCGGTGATGAAGAT
GTACGAGAGTGGTGTGGAGGTCGACCTGGATCTGTCGCCCGACCCCTTCA
TGGTCTGTGGTGTGCTCCTCGAGTCTCTCAGGAGACTTCCAGGGGCTATT
GTCCCTCCTGCAGTGATGCTCGAGATTCAAGGGCTCAGAGATCAGGGCAA
GTTCACGGCTGCTAATGTGGGTGGCATTCTCAGCGAACTGCCAGTGCCCA
ACATCCTACTCCTTAAGCACATGATTGCCTTCCTCTGCCGAGTGACGTAC
CACGCAGACCACAACAGGATGACTGCGGCGAGGCTGAGCACTATCTTTGC
AACGCTGACTGTGCATGAGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108280:233..604+

>mRNA_M-pyrifera_M_contig108280.1760.1 ID=mRNA_M-pyrifera_M_contig108280.1760.1|Name=mRNA_M-pyrifera_M_contig108280.1760.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig108280:233..604+ (Macrocystis pyrifera P11B4 male)
ATTTTCCTCCTGTCAGGAAAGCCTGCCGACATCGAGCCGGTGATGAAGAT
GTACGAGAGTGGTGTGGAGGTCGACCTGGATCTGTCGCCCGACCCCTTCA
TGGTCTGTGGTGTGCTCCTCGAGTCTCTCAGGAGACTTCCAGGGGCTATT
GTCCCTCCTGCAGTGATGCTCGAGATTCAAGGGCTCAGAGATCAGGGCAA
GTTCACGGCTGCTAATGTGGGTGGCATTCTCAGCGAACTGCCAGTGCCCA
ACATCCTACTCCTTAAGCACATGATTGCCTTCCTCTGCCGAGTGACGTAC
CACGCAGACCACAACAGGATGACTGCGGCGAGGCTGAGCACTATCTTTGC
AACGCTGACTGTGCATGAGAGCATTTTCCTCCTGTCAGGAAAGCCTGCCG
ACATCGAGCCGGTGATGAAGATGTACGAGAGTGGTGTGGAGGTCGACCTG
GATCTGTCGCCCGACCCCTTCATGGTCTGTGGTGTGCTCCTCGAGTCTCT
CAGGAGACTTCCAGGGGCTATTGTCCCTCCTGCAGTGATGCTCGAGATTC
AAGGGCTCAGAGATCAGGGCAAGTTCACGGCTGCTAATGTGGGTGGCATT
CTCAGCGAACTGCCAGTGCCCAACATCCTACTCCTTAAGCACATGATTGC
CTTCCTCTGCCGAGTGACGTACCACGCAGACCACAACAGGATGACTGCGG
CGAGGCTGAGCACTATCTTTGCAACGCTGACTGTGCATGAGAGC
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