mRNA_M-pyrifera_M_contig108271.1757.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108271.1757.1
Unique NamemRNA_M-pyrifera_M_contig108271.1757.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108271.1757.1 vs. uniprot
Match: A0A8H6NWI0_9PEZI (Alpha-actinin-like protein 1 n=3 Tax=Colletotrichum orchidearum species complex TaxID=2707337 RepID=A0A8H6NWI0_9PEZI)

HSP 1 Score: 57.4 bits (137), Expect = 1.050e-7
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 1
Query:   49 VIPPRDGGLQETA-----KTRLMQEKAFVRWVNAYLSQRCLELSSLATEFRDGVLLIHLVECISG 228
            V PP D GL   A     K   +Q+K F +W+N  +  R LE+  L T+  DGV+LIHL+EC+S 
Sbjct:  145 VEPPHDQGLTRMAFAEQQKWVSVQQKTFTKWLNTKIESRSLEVKDLVTDLSDGVILIHLLECLSN 209          
BLAST of mRNA_M-pyrifera_M_contig108271.1757.1 vs. uniprot
Match: A0A2N3NCP7_9PEZI (Uncharacterized protein n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3NCP7_9PEZI)

HSP 1 Score: 55.1 bits (131), Expect = 6.880e-7
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1
Query:  100 MQEKAFVRWVNAYLSQRCLELSSLATEFRDGVLLIHLVECISG 228
            +Q+K F +WVN  L  R LE+ +L T+  DGVLLIHL+EC+S 
Sbjct:  262 VQQKTFTKWVNTKLEARDLEVKNLVTDLSDGVLLIHLLECLSN 304          
BLAST of mRNA_M-pyrifera_M_contig108271.1757.1 vs. uniprot
Match: A0A0G4KSN8_9PEZI (Calponin-homology (CH) domain-containing protein (Fragment) n=2 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4KSN8_9PEZI)

HSP 1 Score: 53.9 bits (128), Expect = 1.660e-6
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   34 AQVLNVIPPRDGGLQETA-----KTRLMQEKAFVRWVNAYLSQRCLELSSLATEFRDGVLLIHLVECIS 225
            A +  + PP D GL + A     K   +Q+K F +W+N  +  R LE+  L  +  DGV+LIHL+EC+S
Sbjct:  170 AALAAIEPPHDQGLTKMAFAEQQKWVTVQQKTFTKWLNTKIVARDLEVKDLVADLSDGVILIHLLECLS 238          
BLAST of mRNA_M-pyrifera_M_contig108271.1757.1 vs. uniprot
Match: A0A8I2Z603_9PEZI (Alpha-actinin-like protein 1 like n=1 Tax=Verticillium longisporum TaxID=100787 RepID=A0A8I2Z603_9PEZI)

HSP 1 Score: 53.9 bits (128), Expect = 1.730e-6
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   34 AQVLNVIPPRDGGLQETA-----KTRLMQEKAFVRWVNAYLSQRCLELSSLATEFRDGVLLIHLVECIS 225
            A +  + PP D GL + A     K   +Q+K F +W+N  +  R LE+  L  +  DGV+LIHL+EC+S
Sbjct:  170 AALAAIEPPHDQGLTKMAFAEQQKWVTVQQKTFTKWLNTKIVARDLEVKDLVADLSDGVILIHLLECLS 238          
BLAST of mRNA_M-pyrifera_M_contig108271.1757.1 vs. uniprot
Match: G2X0G5_VERDV (Alpha-actinin-3 n=8 Tax=Verticillium TaxID=1036719 RepID=G2X0G5_VERDV)

HSP 1 Score: 53.9 bits (128), Expect = 1.750e-6
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   34 AQVLNVIPPRDGGLQETA-----KTRLMQEKAFVRWVNAYLSQRCLELSSLATEFRDGVLLIHLVECIS 225
            A +  + PP D GL + A     K   +Q+K F +W+N  +  R LE+  L  +  DGV+LIHL+EC+S
Sbjct:  176 AALAAIEPPHDQGLTKMAFAEQQKWVTVQQKTFTKWLNTKIVARDLEVKDLVADLSDGVILIHLLECLS 244          
BLAST of mRNA_M-pyrifera_M_contig108271.1757.1 vs. uniprot
Match: A0A179HIA2_PURLI (Alpha-actinin, sarcomeric (F-actin cross linking protein) n=4 Tax=Purpureocillium TaxID=1052105 RepID=A0A179HIA2_PURLI)

HSP 1 Score: 53.9 bits (128), Expect = 1.760e-6
Identity = 25/63 (39.68%), Postives = 36/63 (57.14%), Query Frame = 1
Query:   55 PPRDGGLQETAKTR-----LMQEKAFVRWVNAYLSQRCLELSSLATEFRDGVLLIHLVECISG 228
            PP D GL     T       +Q+K F +W+N  +  R LE+  L ++  DGV+LIHL+EC+S 
Sbjct:  232 PPHDQGLARMTFTEQQRWITVQQKTFTKWLNTKIDARDLEVKDLVSDLSDGVILIHLLECLSN 294          
BLAST of mRNA_M-pyrifera_M_contig108271.1757.1 vs. uniprot
Match: B2AXE1_PODAN (Podospora anserina S mat+ genomic DNA chromosome 7, supercontig 1 n=1 Tax=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) TaxID=515849 RepID=B2AXE1_PODAN)

HSP 1 Score: 53.9 bits (128), Expect = 1.760e-6
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 1
Query:   55 PPRDGGLQETAKTR-----LMQEKAFVRWVNAYLSQRCLELSSLATEFRDGVLLIHLVECISG 228
            PP + GL   A         +Q+K F +W+N  L  R LE+  L  +  DGV+LIHL+EC+SG
Sbjct:  256 PPHEQGLTRMAFAEQQRWITVQQKTFTKWLNTKLEVRNLEVKDLVQDLSDGVMLIHLLECLSG 318          
BLAST of mRNA_M-pyrifera_M_contig108271.1757.1 vs. uniprot
Match: U7PQ94_SPOS1 (Uncharacterized protein n=3 Tax=Sporothrix TaxID=29907 RepID=U7PQ94_SPOS1)

HSP 1 Score: 53.9 bits (128), Expect = 1.760e-6
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1
Query:  100 MQEKAFVRWVNAYLSQRCLELSSLATEFRDGVLLIHLVECISG 228
            +QEK F +W+N  L +R LE+  L  +  DGVLLIHL+EC+S 
Sbjct:  285 VQEKTFTKWLNTKLQERDLEVKDLVADLSDGVLLIHLLECLSN 327          
BLAST of mRNA_M-pyrifera_M_contig108271.1757.1 vs. uniprot
Match: S3BZX3_OPHP1 (Actin-binding protein n=1 Tax=Ophiostoma piceae (strain UAMH 11346) TaxID=1262450 RepID=S3BZX3_OPHP1)

HSP 1 Score: 53.9 bits (128), Expect = 1.760e-6
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1
Query:  100 MQEKAFVRWVNAYLSQRCLELSSLATEFRDGVLLIHLVECISG 228
            +QEK F +W+NA LS+R L +  L  +  DGV+LIHL+EC+S 
Sbjct:  298 VQEKTFTKWLNAKLSERNLAVQDLVADLSDGVMLIHLLECLSN 340          
BLAST of mRNA_M-pyrifera_M_contig108271.1757.1 vs. uniprot
Match: F0XUF4_GROCL (Actin-binding protein n=1 Tax=Grosmannia clavigera (strain kw1407 / UAMH 11150) TaxID=655863 RepID=F0XUF4_GROCL)

HSP 1 Score: 53.5 bits (127), Expect = 2.390e-6
Identity = 20/43 (46.51%), Postives = 32/43 (74.42%), Query Frame = 1
Query:  100 MQEKAFVRWVNAYLSQRCLELSSLATEFRDGVLLIHLVECISG 228
            +Q+K F +W+N  +++R LE+  L T+  DGV+LIHL+EC+S 
Sbjct:   45 VQQKTFTKWLNTKIAERRLEVKDLVTDLSDGVMLIHLLECLSA 87          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108271.1757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H6NWI0_9PEZI1.050e-743.08Alpha-actinin-like protein 1 n=3 Tax=Colletotrichu... [more]
A0A2N3NCP7_9PEZI6.880e-753.49Uncharacterized protein n=1 Tax=Lomentospora proli... [more]
A0A0G4KSN8_9PEZI1.660e-639.13Calponin-homology (CH) domain-containing protein (... [more]
A0A8I2Z603_9PEZI1.730e-639.13Alpha-actinin-like protein 1 like n=1 Tax=Verticil... [more]
G2X0G5_VERDV1.750e-639.13Alpha-actinin-3 n=8 Tax=Verticillium TaxID=1036719... [more]
A0A179HIA2_PURLI1.760e-639.68Alpha-actinin, sarcomeric (F-actin cross linking p... [more]
B2AXE1_PODAN1.760e-641.27Podospora anserina S mat+ genomic DNA chromosome 7... [more]
U7PQ94_SPOS11.760e-651.16Uncharacterized protein n=3 Tax=Sporothrix TaxID=2... [more]
S3BZX3_OPHP11.760e-651.16Actin-binding protein n=1 Tax=Ophiostoma piceae (s... [more]
F0XUF4_GROCL2.390e-646.51Actin-binding protein n=1 Tax=Grosmannia clavigera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108271contigM-pyrifera_M_contig108271:149..397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.4635408-CDS-M-pyrifera_M_contig108271:148..3971622815592.4635408-CDS-M-pyrifera_M_contig108271:148..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108271 149..397 -
1692277478.3818586-CDS-M-pyrifera_M_contig108271:148..3971692277478.3818586-CDS-M-pyrifera_M_contig108271:148..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108271 149..397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108271.1757.1prot_M-pyrifera_M_contig108271.1757.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108271 149..397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108271.1757.1

>prot_M-pyrifera_M_contig108271.1757.1 ID=prot_M-pyrifera_M_contig108271.1757.1|Name=mRNA_M-pyrifera_M_contig108271.1757.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
PPLSALEEACDAQVLNVIPPRDGGLQETAKTRLMQEKAFVRWVNAYLSQR
CLELSSLATEFRDGVLLIHLVECISGMPVTCAP
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mRNA from alignment at M-pyrifera_M_contig108271:149..397-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108271.1757.1 ID=mRNA_M-pyrifera_M_contig108271.1757.1|Name=mRNA_M-pyrifera_M_contig108271.1757.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig108271:149..397- (Macrocystis pyrifera P11B4 male)
CCGCCGCTGTCTGCGCTCGAGGAGGCGTGCGACGCACAGGTGCTGAACGT GATTCCGCCGCGCGACGGAGGCCTGCAGGAGACGGCGAAGACGCGGCTCA TGCAGGAGAAGGCCTTCGTGCGCTGGGTCAACGCATATCTCTCGCAGCGC TGCCTCGAGCTCTCCAGCCTGGCGACTGAGTTCCGCGACGGCGTCCTCCT CATCCACTTGGTGGAGTGCATCTCCGGCATGCCCGTCACCTGTGCCCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108271:149..397-

>mRNA_M-pyrifera_M_contig108271.1757.1 ID=mRNA_M-pyrifera_M_contig108271.1757.1|Name=mRNA_M-pyrifera_M_contig108271.1757.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig108271:149..397- (Macrocystis pyrifera P11B4 male)
CCGCCGCTGTCTGCGCTCGAGGAGGCGTGCGACGCACAGGTGCTGAACGT
GATTCCGCCGCGCGACGGAGGCCTGCAGGAGACGGCGAAGACGCGGCTCA
TGCAGGAGAAGGCCTTCGTGCGCTGGGTCAACGCATATCTCTCGCAGCGC
TGCCTCGAGCTCTCCAGCCTGGCGACTGAGTTCCGCGACGGCGTCCTCCT
CATCCACTTGGTGGAGTGCATCTCCGGCATGCCCGTCACCTGTGCCCCTC
CGCCGCTGTCTGCGCTCGAGGAGGCGTGCGACGCACAGGTGCTGAACGTG
ATTCCGCCGCGCGACGGAGGCCTGCAGGAGACGGCGAAGACGCGGCTCAT
GCAGGAGAAGGCCTTCGTGCGCTGGGTCAACGCATATCTCTCGCAGCGCT
GCCTCGAGCTCTCCAGCCTGGCGACTGAGTTCCGCGACGGCGTCCTCCTC
ATCCACTTGGTGGAGTGCATCTCCGGCATGCCCGTCACCTGTGCCCCT
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