mRNA_M-pyrifera_M_contig108227.1755.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108227.1755.1
Unique NamemRNA_M-pyrifera_M_contig108227.1755.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108227.1755.1 vs. uniprot
Match: A0A6G0JFB0_9STRA (Uncharacterized protein (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0JFB0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 9.050e-15
Identity = 49/133 (36.84%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    1 VMGVWHRFEQQKADGVININLRNNRGGNSGRKRIDVEKYKEQLKDVPLKKRTTQSAVANHLGLSQQTLRNNLKHLGMRAASRFLKPVLTEEGKTKRVDWALRWVRDRHGGARAFDTLDNVVMVDEKWFFMKKN 399
            V  +W R+      GV      +    NSGRKR D E+ + +L  VP+++R  +  VA   GLS+  +R  +    +R  + F+KP LT E K +RV+ AL ++ DR      F++L NVV VDEKWF+  +N
Sbjct:   46 VSTIWKRYAAAVEAGVPGGEWSSQIKRNSGRKRKDREEVRAKLATVPVEERAVERRVAAASGLSRHLVRQAVSEGMIRRRTTFIKPALTCENKLERVEHALSFIDDR---TLRFESLHNVVHVDEKWFYADRN 175          
BLAST of mRNA_M-pyrifera_M_contig108227.1755.1 vs. uniprot
Match: W2NW41_PHYPR (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NW41_PHYPR)

HSP 1 Score: 75.5 bits (184), Expect = 2.510e-13
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   79 GNSGRKRIDVEKYKEQLKDVPLKKRTTQSAVANHLGLSQQTLRNNLKHLGMRAASRFLKPVLTEEGKTKRVDWALRWVRDRHGGARAFDTLDNVVMVDEKWF 384
            GN GRK ID ++ + Q++ +PL +R T  ++A  LG+S   +R  LK    R  S  +KP LTEE +  RV +AL     + GG   F  + +VV +DEKWF
Sbjct:   72 GNCGRKAIDTDELRLQIRKIPLSRRMTIKSLAAALGVSTTVIRRLLKEGAFRRHSSNVKPALTEENRLARVQFALSHTTRKRGGEMVFADMFDVVHIDEKWF 173          
BLAST of mRNA_M-pyrifera_M_contig108227.1755.1 vs. uniprot
Match: UPI0007EF58BD (uncharacterized protein LOC108198123 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF58BD)

HSP 1 Score: 72.4 bits (176), Expect = 2.680e-12
Identity = 44/133 (33.08%), Postives = 76/133 (57.14%), Query Frame = 1
Query:    1 VMGVWHRFEQQKADGVININLRNNRGGNSGRKRIDVEKYKEQLKDVPLKKRTTQSAVANHLGLSQQTLRNNLKHLGMRAASRFLKPVLTEEGKTKRVDWALRWV-RDRHGGARAFDTLDNVVMVDEKWFFMKK 396
            V  +W R  +   +G+++++  + +  N GRKR+ V+   EQLK VPL KRTT  + A  + +S+ TL    K   +R  S  +KP+LT + K  RV++ L  +  +       F +++N++ +DEKWF++ K
Sbjct:    4 VQRIWKRARETSINGMVDVS--HLKAKNCGRKRVQVDL--EQLKTVPLSKRTTIRSTAYAIKVSKSTLHRCFKDGKIRRNSNSIKPLLTNKNKENRVEFCLSMLDANSFPNNPRFVSMENMIHIDEKWFYLTK 132          
BLAST of mRNA_M-pyrifera_M_contig108227.1755.1 vs. uniprot
Match: UPI0007EF543B (uncharacterized protein LOC108212812 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF543B)

HSP 1 Score: 72.4 bits (176), Expect = 3.200e-12
Identity = 44/138 (31.88%), Postives = 75/138 (54.35%), Query Frame = 1
Query:    1 VMGVWHRFEQQKADGVININLRNNRGGNSGRKRIDVEKYKEQLKDVPLKKRTTQSAVANHLGLSQQTLRNNLKHLGMRAASRFLKPVLTEEGKTKRVDWALRWV------RDRHGGARAFDTLDNVVMVDEKWFFMKK 396
            V  +W +  Q   +G IN++ +  R  N GRKRI+++   EQ+K VPL +RT+  ++A  + +S+ TL  N K   +R  S  +KP L +  K  R  ++L  +       D H     F  +++++ +DEKWF++ K
Sbjct:  132 VARIWKQATQSSNNGAINVSHK--RSKNCGRKRIEIDP--EQIKKVPLSRRTSLESLAYAINVSKSTLHRNFKSGRLRRHSNHVKPYLKDSNKKARAQFSLSMIDKSSLPHDPH-----FKDMNDMIHIDEKWFYISK 260          
BLAST of mRNA_M-pyrifera_M_contig108227.1755.1 vs. uniprot
Match: A0A0W8DPK2_PHYNI (HTH_Tnp_Tc3_2 domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DPK2_PHYNI)

HSP 1 Score: 70.5 bits (171), Expect = 4.430e-12
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   10 VWHRFEQQKADGVININLRNNRGGNSGRKRIDVEKYKEQLKDVPLKKRTTQSAVANHLGLSQQTLRNNLKHLGMRAASRFLKPVLTEEGKTKRVDWALRWVRDRHGGARAFDTLDNVVMVDEKWF 384
            +W   ++ + +     NL +   GN GRK ID ++ + Q++ +PL +R T  ++A  LG+S   +R  LK    R  S  +KP LTEE +  RV +AL     + GG   F  + +VV +DEK F
Sbjct:   72 LWELHKKTRTEENRLGNLASGLIGNCGRKAIDTDELRLQIRKIPLSRRMTIKSLAAALGVSTTVIRRLLKEGAFRRHSSNVKPALTEENRLARVQFALSHTTRKRGGEMVFADMFDVVHIDEKRF 196          
BLAST of mRNA_M-pyrifera_M_contig108227.1755.1 vs. uniprot
Match: W2QKX2_PHYPN (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QKX2_PHYPN)

HSP 1 Score: 70.5 bits (171), Expect = 1.380e-11
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   10 VWHRFEQQKADGVININLRNNRGGNSGRKRIDVEKYKEQLKDVPLKKRTTQSAVANHLGLSQQTLRNNLKHLGMRAASRFLKPVLTEEGKTKRVDWALRWVRDRHGGARAFDTLDNVVMVDEKWF 384
            +W   ++ + +     NL +   GN GRK ID ++ + Q++ +PL +R T  ++A  LG+S   +R  LK    R  S  +KP LTEE +  RV +AL     + GG   F  + +VV +DEK F
Sbjct:   49 LWELHKKTRTEENRLGNLASGLIGNCGRKAIDTDELRLQIRKIPLSRRMTIKSLAAALGVSTTVIRRLLKEGAFRRHSSNVKPALTEENRLARVQFALSHTTRKRGGEMVFADMFDVVHIDEKRF 173          
BLAST of mRNA_M-pyrifera_M_contig108227.1755.1 vs. uniprot
Match: A0A225VZR2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VZR2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.410e-11
Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = 1
Query:    1 VMGVWHRFEQQKADGVININLRNNRGGNSGRKRIDVEKYKEQLKDVPLKKRTTQSAVANHLGLSQQTLRNNLKHLGMRAASRFLKPVLTEEGKTKRVDWALRWVRDRHGGARAFDTLDNVVMVDEKWFFMKKN 399
            V  +W R++   ++G+     ++     SGRKR+D     E+LK V L  R  +   A   G+S+  +R  +K   +   +  ++P LT E K  R++ AL ++ D    +  F+T+++VV VDEKWF   KN
Sbjct:   44 VTKIWARYQTTSSNGISGGEWKSRIKEKSGRKRLDRVAAAEKLKQVSLDDRQVERRAAAAAGISRHLVRELMKEGVVSRKTTRIRPALTAENKLHRIESALAYIND---DSMNFETMEDVVHVDEKWFNEDKN 173          
BLAST of mRNA_M-pyrifera_M_contig108227.1755.1 vs. uniprot
Match: UPI0012635B1A (uncharacterized protein LOC116110731 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI0012635B1A)

HSP 1 Score: 65.9 bits (159), Expect = 6.050e-10
Identity = 43/136 (31.62%), Postives = 75/136 (55.15%), Query Frame = 1
Query:    1 VMGVWHRFEQQKA-DGVININLRNNRGGNSGRKRIDVEKYKEQLKDVPLKKRTTQSAVANHLGLSQQTLRNNLKHLGMRAASRFLKPVLTEEGKTKRVDWALRWVRDRHGGARA---FDTLDNVVMVDEKWFFMKK 396
            V  +W R ++ +  D   N++ R  +  N GRKR++++    Q +++PL++RT+  +++    LS  TL   LK   +R  S  +KP+L  E    R+ + L  +   HG   +   F T++N++ VDEKWF+M K
Sbjct:   84 VQRIWQRGKENEVLDSSTNVSSR--KALNCGRKRLEIDV--SQFRNIPLRRRTSLRSLSAVTNLSVTTLFRRLKEGSIRRHSNAIKPLLNVENMKARIRFCLSMIE--HGNNPSCLRFVTMENIIHVDEKWFYMTK 213          
BLAST of mRNA_M-pyrifera_M_contig108227.1755.1 vs. uniprot
Match: UPI00126373FC (uncharacterized protein LOC116121497 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI00126373FC)

HSP 1 Score: 65.1 bits (157), Expect = 9.510e-10
Identity = 43/136 (31.62%), Postives = 75/136 (55.15%), Query Frame = 1
Query:    1 VMGVWHRFEQQKA-DGVININLRNNRGGNSGRKRIDVEKYKEQLKDVPLKKRTTQSAVANHLGLSQQTLRNNLKHLGMRAASRFLKPVLTEEGKTKRVDWALRWVRDRHGGARA---FDTLDNVVMVDEKWFFMKK 396
            V  +W R ++ +  D   N++ R  +  N GRKR++++    Q +++PL++RT+  +++    LS  TL   LK   +R  S  +KP+L  E    R+ + L  +   HG   +   F T++N++ VDEKWF+M K
Sbjct:    4 VQRIWQRGKENEVLDSNTNVSSR--KALNCGRKRLEIDI--SQFRNIPLRRRTSLRSLSAVTNLSVTTLFRRLKEGSIRRHSNAIKPLLNVENMKARIRFCLSMIE--HGNNPSCLRFVTMENIIHVDEKWFYMTK 133          
BLAST of mRNA_M-pyrifera_M_contig108227.1755.1 vs. uniprot
Match: UPI001262DD8A (uncharacterized protein LOC116116357 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001262DD8A)

HSP 1 Score: 65.1 bits (157), Expect = 1.000e-9
Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   10 VWHRFEQQKADGVI--NINLRNNRGGNSGRKRIDVEKYKEQLKDVPLKKRTTQSAVANHLGLSQQTLRNNLKHLGMRAASRFLKPVLTEEGKTKRVDWALRWVRDRHGGARA---FDTLDNVVMVDEKWFFMKK 396
            V H +++ K + V+  N N+ + +  N GRK + ++    Q + +PL++RTT  +++    LS  TL   LK   +R  S  +KP+L  E    R+ + L  +   HG   +   F T++N++ VDEKWF+M K
Sbjct:   84 VQHIWQRGKENEVLDSNTNVSSRKALNCGRKHLQIDV--NQFRHIPLRRRTTLRSLSAATNLSVTTLFRRLKEGSIRRHSNAIKPLLNVENMKARIRFCLSMIE--HGNNPSCLRFVTMENIIHVDEKWFYMTK 213          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108227.1755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0JFB0_9STRA9.050e-1536.84Uncharacterized protein (Fragment) n=5 Tax=Phytoph... [more]
W2NW41_PHYPR2.510e-1340.20HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
UPI0007EF58BD2.680e-1233.08uncharacterized protein LOC108198123 n=1 Tax=Daucu... [more]
UPI0007EF543B3.200e-1231.88uncharacterized protein LOC108212812 n=1 Tax=Daucu... [more]
A0A0W8DPK2_PHYNI4.430e-1234.40HTH_Tnp_Tc3_2 domain-containing protein n=1 Tax=Ph... [more]
W2QKX2_PHYPN1.380e-1134.40HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
A0A225VZR2_9STRA2.410e-1131.58Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
UPI0012635B1A6.050e-1031.62uncharacterized protein LOC116110731 n=1 Tax=Pista... [more]
UPI00126373FC9.510e-1031.62uncharacterized protein LOC116121497 n=1 Tax=Pista... [more]
UPI001262DD8A1.000e-932.09uncharacterized protein LOC116116357 n=1 Tax=Pista... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108227contigM-pyrifera_M_contig108227:2..400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog4792.ETI53387
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,3QGXT@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size399
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.3711715-CDS-M-pyrifera_M_contig108227:1..3971622815592.3711715-CDS-M-pyrifera_M_contig108227:1..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108227 2..397 -
1692277478.34751-CDS-M-pyrifera_M_contig108227:1..3971692277478.34751-CDS-M-pyrifera_M_contig108227:1..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108227 2..397 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.382817-UTR-M-pyrifera_M_contig108227:397..4001622815592.382817-UTR-M-pyrifera_M_contig108227:397..400Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108227 398..400 -
1692277478.358873-UTR-M-pyrifera_M_contig108227:397..4001692277478.358873-UTR-M-pyrifera_M_contig108227:397..400Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108227 398..400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108227.1755.1prot_M-pyrifera_M_contig108227.1755.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108227 2..397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108227.1755.1

>prot_M-pyrifera_M_contig108227.1755.1 ID=prot_M-pyrifera_M_contig108227.1755.1|Name=mRNA_M-pyrifera_M_contig108227.1755.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MGVWHRFEQQKADGVININLRNNRGGNSGRKRIDVEKYKEQLKDVPLKKR
TTQSAVANHLGLSQQTLRNNLKHLGMRAASRFLKPVLTEEGKTKRVDWAL
RWVRDRHGGARAFDTLDNVVMVDEKWFFMKKN
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mRNA from alignment at M-pyrifera_M_contig108227:2..400-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108227.1755.1 ID=mRNA_M-pyrifera_M_contig108227.1755.1|Name=mRNA_M-pyrifera_M_contig108227.1755.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig108227:2..400- (Macrocystis pyrifera P11B4 male)
GTCATGGGAGTGTGGCATCGCTTCGAGCAGCAGAAGGCCGACGGTGTGAT AAACATCAATCTGCGCAACAACCGTGGTGGAAACTCAGGTAGGAAACGCA TCGACGTCGAGAAATACAAGGAACAACTGAAGGACGTACCGCTGAAAAAG CGCACCACCCAGAGCGCTGTTGCAAACCATCTGGGCCTCTCCCAACAAAC CCTTCGCAACAACCTCAAGCACCTGGGGATGCGTGCGGCGTCTCGATTCC TCAAGCCGGTTCTGACGGAAGAGGGAAAGACGAAGAGGGTGGATTGGGCC CTGCGTTGGGTGCGTGACCGCCATGGTGGTGCTCGTGCCTTCGACACGTT GGACAACGTGGTCATGGTGGATGAGAAATGGTTTTTCATGAAAAAGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108227:2..400-

>mRNA_M-pyrifera_M_contig108227.1755.1 ID=mRNA_M-pyrifera_M_contig108227.1755.1|Name=mRNA_M-pyrifera_M_contig108227.1755.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig108227:2..400- (Macrocystis pyrifera P11B4 male)
ATGGGAGTGTGGCATCGCTTCGAGCAGCAGAAGGCCGACGGTGTGATAAA
CATCAATCTGCGCAACAACCGTGGTGGAAACTCAGGTAGGAAACGCATCG
ACGTCGAGAAATACAAGGAACAACTGAAGGACGTACCGCTGAAAAAGCGC
ACCACCCAGAGCGCTGTTGCAAACCATCTGGGCCTCTCCCAACAAACCCT
TCGCAACAACCTCAAGCACCTGGGGATGCGTGCGGCGTCTCGATTCCTCA
AGCCGGTTCTGACGGAAGAGGGAAAGACGAAGAGGGTGGATTGGGCCCTG
CGTTGGGTGCGTGACCGCCATGGTGGTGCTCGTGCCTTCGACACGTTGGA
CAACGTGGTCATGGTGGATGAGAAATGGTTTTTCATGAAAAAGAATATGG
GAGTGTGGCATCGCTTCGAGCAGCAGAAGGCCGACGGTGTGATAAACATC
AATCTGCGCAACAACCGTGGTGGAAACTCAGGTAGGAAACGCATCGACGT
CGAGAAATACAAGGAACAACTGAAGGACGTACCGCTGAAAAAGCGCACCA
CCCAGAGCGCTGTTGCAAACCATCTGGGCCTCTCCCAACAAACCCTTCGC
AACAACCTCAAGCACCTGGGGATGCGTGCGGCGTCTCGATTCCTCAAGCC
GGTTCTGACGGAAGAGGGAAAGACGAAGAGGGTGGATTGGGCCCTGCGTT
GGGTGCGTGACCGCCATGGTGGTGCTCGTGCCTTCGACACGTTGGACAAC
GTGGTCATGGTGGATGAGAAATGGTTTTTCATGAAAAAGAAT
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