mRNA_M-pyrifera_M_contig108215.1754.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108215.1754.1
Unique NamemRNA_M-pyrifera_M_contig108215.1754.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108215.1754.1 vs. uniprot
Match: A9T848_PHYPA (Nocturnin (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T848_PHYPA)

HSP 1 Score: 89.4 bits (220), Expect = 4.170e-19
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 LRVVWWNVLADGLAESGGFVHCEAKDLGWDHRGPLIVDHLRRLDADILGLSEATHVSDTILRNLRAKGYVGLFAPKGMSPCVPGGTDVRKVGGVVDGCALLWRSDRVKLFSSEVV 345
            LRV+ WNVLADGLA+SG F   E K L W+HR PL++  + + D  ++ L E  H  D  L  L+  GYVG +  K   PC    +  +K     DGCA+ ++S R++L  S+ +
Sbjct:   41 LRVMQWNVLADGLAQSGDFDRVEKKFLEWNHRAPLLLGRILKDDPHVICLQELNHFDDFFLPELKRHGYVGEYWQK---PC----SAAQKFESPADGCAIFYKSSRLQLLKSDTI 148          
BLAST of mRNA_M-pyrifera_M_contig108215.1754.1 vs. uniprot
Match: A0A2K1JZI7_PHYPA (Nocturnin n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JZI7_PHYPA)

HSP 1 Score: 89.4 bits (220), Expect = 8.860e-19
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 LRVVWWNVLADGLAESGGFVHCEAKDLGWDHRGPLIVDHLRRLDADILGLSEATHVSDTILRNLRAKGYVGLFAPKGMSPCVPGGTDVRKVGGVVDGCALLWRSDRVKLFSSEVV 345
            LRV+ WNVLADGLA+SG F   E K L W+HR PL++  + + D  ++ L E  H  D  L  L+  GYVG +  K   PC    +  +K     DGCA+ ++S R++L  S+ +
Sbjct:   41 LRVMQWNVLADGLAQSGDFDRVEKKFLEWNHRAPLLLGRILKDDPHVICLQELNHFDDFFLPELKRHGYVGEYWQK---PC----SAAQKFESPADGCAIFYKSSRLQLLKSDTI 148          
BLAST of mRNA_M-pyrifera_M_contig108215.1754.1 vs. uniprot
Match: A0A7S3BQI8_9VIRI (Nocturnin n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BQI8_9VIRI)

HSP 1 Score: 85.1 bits (209), Expect = 3.010e-17
Identity = 48/112 (42.86%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    1 LRVVWWNVLADGLAESGGFVHCEAKDLGWDHRGPLIVDHLRRLDADILGLSEATHVSDTILRNLRAKGYVGLFAPKGMSPCVPGGTDVRKVGGVVDGCALLW---RSDRVKL 327
            LRV+ +N LADGLA+ G F+ C+A+ L W  R PL+   + RL  DI+GL E     D +   LRA+GY  +F  K  SPC+       K G   DGC L W   R +RV L
Sbjct:   60 LRVLQFNTLADGLAQHGDFLRCDARSLQWGARQPLLEAEIFRLKPDIIGLQEVNRYDDWLEAALRARGYESVFLRKEESPCL-------KYGFPGDGCVLAWDAARFERVAL 164          
BLAST of mRNA_M-pyrifera_M_contig108215.1754.1 vs. uniprot
Match: A0A2R6WLQ9_MARPO (Nocturnin n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WLQ9_MARPO)

HSP 1 Score: 83.6 bits (205), Expect = 8.030e-17
Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    1 LRVVWWNVLADGLAESGGFV-----HCEAKDLGWDHRGPLIVDHLRRLDADILGLSEATHVSDTILRNLRAKGYVGLFAPKGMSPCVPGGTDVRKVGGVVDGCALLWRSDRVKLFSSEVV 345
            LRV+ WNVLADGLA+ G F         A  LGW  RGP +V  +    AD++ L E  H  D  L  LR +GY G F  K +SP +       + G   DGCA+ +R+ R++L   +VV
Sbjct:   10 LRVMQWNVLADGLAQFGDFCCGGAERVPADVLGWGARGPKLVGAIVGASADVVCLQEVNHFEDFFLPELRQRGYDGTFVAKKLSPAL-------QYGCSPDGCAIFYRTSRLQLVQRDVV 122          
BLAST of mRNA_M-pyrifera_M_contig108215.1754.1 vs. uniprot
Match: A0A813BW25_9DINO (Nocturnin n=3 Tax=Sar TaxID=2698737 RepID=A0A813BW25_9DINO)

HSP 1 Score: 78.2 bits (191), Expect = 1.700e-14
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 1
Query:    1 LRVVWWNVLADGLAESGGFVHCE--AKDLGWDHRGPLIVDHLRRLDADILGLSEATHVSDTILRNLRAKGYVGLFAPKGMSPCVPGGTDVRKVGGVVDGCALLWRSDRVKLFSSEVV 345
            LRV+ WNVLADGLA+ G F H +  A++L W+ R P I+  +   DAD++ L E  H  DT   +L   G        G+  C   GT   ++GG  DG A+L R  R++L SS VV
Sbjct:   19 LRVMTWNVLADGLAQHGNFAHIKEPARELSWEARAPGILATIESADADVVCLQECNHWHDTFEPHLCIAGPWS-----GVHTCA--GTAAERLGGDADGEAVLLRRSRLELLSSRVV 128          
BLAST of mRNA_M-pyrifera_M_contig108215.1754.1 vs. uniprot
Match: A0A7R9Y286_9VIRI (Nocturnin n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y286_9VIRI)

HSP 1 Score: 76.3 bits (186), Expect = 4.460e-14
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    1 LRVVWWNVLADGLAESGGFVHCEAKDLGWDHRGPLIVDHLRRLDADILGLSEATHVSDTILRNLRAKGYVGLFAPKGMSPCVPGGTDVRKVGGVVDGCALLWRSDRVKL 327
            LRV+ +NVLADGLA++G F+ CE   L + +R P++   +  L   ++GL E     D +   L+A+GY   F  K  SPC        K G   DGC L W + R +L
Sbjct:   38 LRVLQFNVLADGLAQNGEFLKCEPVHLEFAYRRPMLEAEIFGLQPHVIGLQEVNRYDDWLREALQARGYESRFLQKSPSPC-------EKFGFPADGCVLAWDAARFEL 139          
BLAST of mRNA_M-pyrifera_M_contig108215.1754.1 vs. uniprot
Match: A0A388L3H5_CHABU (Nocturnin n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L3H5_CHABU)

HSP 1 Score: 77.0 bits (188), Expect = 4.480e-14
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 1
Query:    1 LRVVWWNVLADGLAESGGFVHCEAKDLGWDHRGPLIVDHLRRLDADILGLSEATHVSDTILRNL--RAKGYVGLFAPKGMSPCVPGGTDVRKVGGVVDGCALLWRSDRVK 324
            +RV+ WN LADGLA++G FV      L W  R PL++  + R DAD + L E  H  D     L  R+  Y G F PK  SP        R+ G   DGCA+ +R  R +
Sbjct:  536 VRVLQWNTLADGLAQTGDFVKAPLAALEWAGRAPLLLGEILRADADFICLQEVNHFHDFFAPKLKDRSDAYAGFFHPKMASPA-------RRFGFDCDGCAMFYRCRRFR 638          
BLAST of mRNA_M-pyrifera_M_contig108215.1754.1 vs. uniprot
Match: A0A5A8E5V3_CAFRO (Nocturnin n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E5V3_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 1.280e-13
Identity = 47/117 (40.17%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    1 LRVVWWNVLADGLAESGGFVHCE--AKDLGWDHRGPLIVDHLRRLDADILGLSEATHVSDTILRNLRAKGYVGLFAPKGMSPCVPGGTDVRKVGGVVDGCALLWRSDRVKLFSSEVV 345
            LRV+ WNVLADGLA+ G F H +  A++L W+ R P I+  +    AD++ L E  H  DT   +L   G        G+  C   GT   ++GG  DG A+L R  R++L SS VV
Sbjct:   33 LRVMTWNVLADGLAQHGNFAHIKEPARELSWEARAPGILATIESAGADVVCLQECNHWHDTFEPHLCIAGPWS-----GVHTCA--GTAAERLGGDADGEAVLLRRSRLELLSSRVV 142          
BLAST of mRNA_M-pyrifera_M_contig108215.1754.1 vs. uniprot
Match: A0A830HLP2_9CHLO (Nocturnin n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HLP2_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 2.600e-13
Identity = 49/139 (35.25%), Postives = 65/139 (46.76%), Query Frame = 1
Query:    1 LRVVWWNVLADGLAESGGF--VHCEAKDLGWDHRGPLIVDHLRRLDADILGLSEA-----------------------THVSDTILRNLRAKGYVGLFAPKGMSPCVPGGTDVRKVGGVVDGCALLWRSDRVKLFSSEV 342
            LR++ WN+LADGLA+ GGF  V  ++  L W HR PLI   +    AD++   EA                       T +  T+   + A GY G FAPK  SPCV       K+G   DG A+LW+  R +L    V
Sbjct:   25 LRILTWNILADGLAQDGGFDGVAPDSDTLTWTHRLPLICAEIANAGADVICFQEASRCFAPPETEQNEGEGQDDGSSPTPLWRTLEPVIAALGYDGCFAPKRPSPCV-------KLGAPPDGVAVLWKKSRCELVGEPV 156          
BLAST of mRNA_M-pyrifera_M_contig108215.1754.1 vs. uniprot
Match: A0A5J4XUY6_9CHLO (Nocturnin n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XUY6_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 4.840e-13
Identity = 40/106 (37.74%), Postives = 53/106 (50.00%), Query Frame = 1
Query:    1 LRVVWWNVLADGLAESGGFVHCEAKDLGWDHRGPLIVDHLRRLDADILGLSEATHVSDTILRNLRAKGYVGLFAPKGMSPCVPGGTDVRKVGGVVDGCALLWRSDR 318
            L+++ WNVLADGLA+ G FV    + L W  R   ++  +     DI+ L E     D  L  ++  GY G F  K   PC P      + G   DGCAL +RSDR
Sbjct:   44 LKILQWNVLADGLAQHGDFVKVTQQALCWSSRAEKLLQQILEPQPDIVCLQEVNRYGDCFLPAMKKHGYTGAFFCK---PCSP----AEQYGASCDGCALFYRSDR 142          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108215.1754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9T848_PHYPA4.170e-1940.00Nocturnin (Fragment) n=1 Tax=Physcomitrium patens ... [more]
A0A2K1JZI7_PHYPA8.860e-1940.00Nocturnin n=2 Tax=Physcomitrium patens TaxID=3218 ... [more]
A0A7S3BQI8_9VIRI3.010e-1742.86Nocturnin n=1 Tax=Prasinoderma singulare TaxID=676... [more]
A0A2R6WLQ9_MARPO8.030e-1740.00Nocturnin n=2 Tax=Marchantia polymorpha TaxID=3197... [more]
A0A813BW25_9DINO1.700e-1441.03Nocturnin n=3 Tax=Sar TaxID=2698737 RepID=A0A813BW... [more]
A0A7R9Y286_9VIRI4.460e-1437.61Nocturnin n=1 Tax=Prasinoderma coloniale TaxID=156... [more]
A0A388L3H5_CHABU4.480e-1439.09Nocturnin n=1 Tax=Chara braunii TaxID=69332 RepID=... [more]
A0A5A8E5V3_CAFRO1.280e-1340.17Nocturnin n=4 Tax=Cafeteria roenbergensis TaxID=33... [more]
A0A830HLP2_9CHLO2.600e-1335.25Nocturnin n=1 Tax=Pycnococcus provasolii TaxID=418... [more]
A0A5J4XUY6_9CHLO4.840e-1337.74Nocturnin n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108215contigM-pyrifera_M_contig108215:4..348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.3
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog3218.PP1S181_114V6.1
KEGG koko:K18764
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs37W12@33090,COG5239@1,KOG0620@2759
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-26_003210.1
EC3.1.13.4
COG Functional cat.K
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.3315911-CDS-M-pyrifera_M_contig108215:3..3481622815592.3315911-CDS-M-pyrifera_M_contig108215:3..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108215 4..348 -
1692277478.3320112-CDS-M-pyrifera_M_contig108215:3..3481692277478.3320112-CDS-M-pyrifera_M_contig108215:3..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108215 4..348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108215.1754.1prot_M-pyrifera_M_contig108215.1754.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108215 4..348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108215.1754.1

>prot_M-pyrifera_M_contig108215.1754.1 ID=prot_M-pyrifera_M_contig108215.1754.1|Name=mRNA_M-pyrifera_M_contig108215.1754.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
LRVVWWNVLADGLAESGGFVHCEAKDLGWDHRGPLIVDHLRRLDADILGL
SEATHVSDTILRNLRAKGYVGLFAPKGMSPCVPGGTDVRKVGGVVDGCAL
LWRSDRVKLFSSEVV
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mRNA from alignment at M-pyrifera_M_contig108215:4..348-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108215.1754.1 ID=mRNA_M-pyrifera_M_contig108215.1754.1|Name=mRNA_M-pyrifera_M_contig108215.1754.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig108215:4..348- (Macrocystis pyrifera P11B4 male)
TTGAGGGTGGTGTGGTGGAATGTACTGGCAGATGGTTTGGCAGAATCGGG AGGATTTGTACATTGCGAAGCCAAAGATCTGGGATGGGACCATAGAGGGC CTTTGATTGTGGATCATCTCCGACGATTAGATGCAGATATTCTGGGACTG TCCGAAGCAACACATGTTTCGGACACAATCTTGCGAAATTTGAGAGCAAA AGGTTACGTTGGGTTGTTTGCACCCAAGGGAATGTCTCCTTGTGTTCCTG GTGGAACAGATGTTCGTAAAGTTGGTGGAGTTGTAGATGGATGTGCATTG CTGTGGAGAAGTGACCGTGTGAAGCTATTTTCGAGCGAAGTTGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108215:4..348-

>mRNA_M-pyrifera_M_contig108215.1754.1 ID=mRNA_M-pyrifera_M_contig108215.1754.1|Name=mRNA_M-pyrifera_M_contig108215.1754.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig108215:4..348- (Macrocystis pyrifera P11B4 male)
TTGAGGGTGGTGTGGTGGAATGTACTGGCAGATGGTTTGGCAGAATCGGG
AGGATTTGTACATTGCGAAGCCAAAGATCTGGGATGGGACCATAGAGGGC
CTTTGATTGTGGATCATCTCCGACGATTAGATGCAGATATTCTGGGACTG
TCCGAAGCAACACATGTTTCGGACACAATCTTGCGAAATTTGAGAGCAAA
AGGTTACGTTGGGTTGTTTGCACCCAAGGGAATGTCTCCTTGTGTTCCTG
GTGGAACAGATGTTCGTAAAGTTGGTGGAGTTGTAGATGGATGTGCATTG
CTGTGGAGAAGTGACCGTGTGAAGCTATTTTCGAGCGAAGTTGTTTTGAG
GGTGGTGTGGTGGAATGTACTGGCAGATGGTTTGGCAGAATCGGGAGGAT
TTGTACATTGCGAAGCCAAAGATCTGGGATGGGACCATAGAGGGCCTTTG
ATTGTGGATCATCTCCGACGATTAGATGCAGATATTCTGGGACTGTCCGA
AGCAACACATGTTTCGGACACAATCTTGCGAAATTTGAGAGCAAAAGGTT
ACGTTGGGTTGTTTGCACCCAAGGGAATGTCTCCTTGTGTTCCTGGTGGA
ACAGATGTTCGTAAAGTTGGTGGAGTTGTAGATGGATGTGCATTGCTGTG
GAGAAGTGACCGTGTGAAGCTATTTTCGAGCGAAGTTGTT
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