mRNA_M-pyrifera_M_contig108209.1752.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig108209.1752.1 vs. uniprot
Match: A0A812WTL0_9DINO (DNA topoisomerase 2 (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WTL0_9DINO) HSP 1 Score: 283 bits (723), Expect = 8.850e-91 Identity = 140/198 (70.71%), Postives = 164/198 (82.83%), Query Frame = 1 Query: 4 PLLFERVNDRWEVCVTVSDGSFQQVSFVNSICTTKGGQHVTYVADQVADAVVKAASKKNKGVPLKTHHARNHLFVFVNSLIENPAFDSQTKETLTTRPRAFGSECVLGAKFL*QVLKSGVVDRVLSWAKFKQTAELRRVGGAKKATVLGIPKLDDANNAGSGAKARDCTLIVTEGDSAKALAISGLSVVGRDNYGVFP 597 P +F R+NDRWEVCV+VSDG F QVSFVN+ICT KGGQHV Y+ADQV +V+ A++KNKGV +K HH +NHLFVFVN+LIENPAFDSQTKETLTTR +AFGS L KFL V +GVVDRVL+WAKFKQT+EL+RVGG+KK + GIPKL+DAN AG GA++ CTLI+TEGDSA A+SGLSVVGRD YGVFP Sbjct: 256 PRVFARINDRWEVCVSVSDGQFNQVSFVNAICTVKGGQHVDYIADQVTKEMVRLANRKNKGVQVKPHHVKNHLFVFVNALIENPAFDSQTKETLTTRSKAFGSTAELPPKFLKAVAAAGVVDRVLAWAKFKQTSELKRVGGSKKVNLSGIPKLNDANWAG-GARSGQCTLILTEGDSAMTTAVSGLSVVGRDAYGVFP 452
BLAST of mRNA_M-pyrifera_M_contig108209.1752.1 vs. uniprot
Match: A0A812HK16_9DINO (DNA topoisomerase 2 n=5 Tax=Sar TaxID=2698737 RepID=A0A812HK16_9DINO) HSP 1 Score: 285 bits (730), Expect = 1.270e-85 Identity = 145/200 (72.50%), Postives = 168/200 (84.00%), Query Frame = 1 Query: 1 MPLLFERVNDRWEVCVTVSDGSFQQVSFVNSICTTKGGQHVTYVADQVADAVVKAASKKNKGVPLKTHHARNHLFVFVNSLIENPAFDSQTKETLTTRPRAFGSECVLGAKFL*QVL-KSGVVDRVLSWAKFKQTAELRRVGGAKKATVLGIPKLDDANNAGSGAKARDCTLIVTEGDSAKALAISGLSVVGRDNYGVFP 597 +P LF RV+DRWEV V VSDG F QVSFVN+ICTT+GG HV V+DQ+A+AV K+A++KNKGVPLK HH RNH+ VFVN L+ENPAFDSQTK+TL T ++FGS C L KF+ QV+ KSGVVDRVLSWAKFKQ+AEL+R GG K T+ GIPKLDDANNAG+ A+A TLI+TEGDSAKALAISGLSVVGRDNYGVFP Sbjct: 347 LPRLFCRVSDRWEVAVAVSDGQFTQVSFVNAICTTRGGSHVKMVSDQIAEAVCKSAARKNKGVPLKAHHVRNHMTVFVNCLVENPAFDSQTKDTLITTAKSFGSVCELPDKFVKQVVAKSGVVDRVLSWAKFKQSAELKRKGGTKTRTITGIPKLDDANNAGT-ARAEQTTLILTEGDSAKALAISGLSVVGRDNYGVFP 545
BLAST of mRNA_M-pyrifera_M_contig108209.1752.1 vs. uniprot
Match: A0A812R7V5_SYMMI (DNA topoisomerase 2 (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812R7V5_SYMMI) HSP 1 Score: 276 bits (707), Expect = 4.460e-83 Identity = 138/198 (69.70%), Postives = 161/198 (81.31%), Query Frame = 1 Query: 4 PLLFERVNDRWEVCVTVSDGSFQQVSFVNSICTTKGGQHVTYVADQVADAVVKAASKKNKGVPLKTHHARNHLFVFVNSLIENPAFDSQTKETLTTRPRAFGSECVLGAKFL*QVLKSGVVDRVLSWAKFKQTAELRRVGGAKKATVLGIPKLDDANNAGSGAKARDCTLIVTEGDSAKALAISGLSVVGRDNYGVFP 597 P FER+NDRWEV V VSDGSFQQVSFVNSICT KGGQHV Y+ DQ+ + ++ KKNKG +K H +NHL VFVN+L+ NPAFDSQTKE LTT+P +FGS C L KFL +V SGVVD +LSWAKFKQ+AEL++ GG+KK+ +LGI KLDDAN AG+ AK+RDCTLI+TEGDSAKALAISGL VVGRD YGVFP Sbjct: 183 PCAFERINDRWEVGVAVSDGSFQQVSFVNSICTIKGGQHVNYIVDQLTNKLIGTVKKKNKGTEVKATHVKNHLAVFVNALVVNPAFDSQTKENLTTKPSSFGSTCPLPDKFLKKVETSGVVDNILSWAKFKQSAELKKKGGSKKSKLLGITKLDDANFAGT-AKSRDCTLILTEGDSAKALAISGLGVVGRDYYGVFP 379
BLAST of mRNA_M-pyrifera_M_contig108209.1752.1 vs. uniprot
Match: A0A7S2U7T3_9STRA (DNA topoisomerase 2 (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7T3_9STRA) HSP 1 Score: 259 bits (663), Expect = 5.710e-82 Identity = 131/199 (65.83%), Postives = 157/199 (78.89%), Query Frame = 1 Query: 4 PLLFERVNDRWEVCVTVSDGSFQQVSFVNSICTTKGGQHVTYVADQVADAVVKAASKKNKG-VPLKTHHARNHLFVFVNSLIENPAFDSQTKETLTTRPRAFGSECVLGAKFL*QVLKSGVVDRVLSWAKFKQTAELRRVGGAKKATVLGIPKLDDANNAGSGAKARDCTLIVTEGDSAKALAISGLSVVGRDNYGVFP 597 P +E+V DRWEV +++SDGSFQQ+SFVNSICT+KGG H TY+ADQVA + KKNKG +K + +NH+ VFVN L+ENPAFDSQTKE L TRP+ FGSEC L F+ +V KSGVVD +LS+AKFKQ L+R GG KK+ + GI KLDDANNAG AK+RDCTLI+TEGDSAK+LA+SGLSVVGRD YGVFP Sbjct: 180 PAAYEKVGDRWEVGISISDGSFQQISFVNSICTSKGGGHTTYIADQVAAKLAAVIKKKNKGGAEVKPNQIKNHISVFVNCLVENPAFDSQTKEFLATRPKDFGSECKLSDAFMKKVEKSGVVDSILSYAKFKQNEALKRKGGVKKSKLTGIAKLDDANNAGK-AKSRDCTLIITEGDSAKSLAMSGLSVVGRDFYGVFP 377
BLAST of mRNA_M-pyrifera_M_contig108209.1752.1 vs. uniprot
Match: A0A7S2CIM0_9STRA (DNA topoisomerase 2 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CIM0_9STRA) HSP 1 Score: 256 bits (654), Expect = 1.380e-79 Identity = 126/198 (63.64%), Postives = 156/198 (78.79%), Query Frame = 1 Query: 4 PLLFERVNDRWEVCVTVSDGSFQQVSFVNSICTTKGGQHVTYVADQVADAVVKAASKKNKGVPLKTHHARNHLFVFVNSLIENPAFDSQTKETLTTRPRAFGSECVLGAKFL*QVLKSGVVDRVLSWAKFKQTAELRRVGGAKKATVLGIPKLDDANNAGSGAKARDCTLIVTEGDSAKALAISGLSVVGRDNYGVFP 597 P FE++NDRWE+ + +SDG F QVSFVNSICT KGGQH +VA++V + KKNKG +K H +NHL V+VN LIENP+FDSQTKE+LTTRP+AFGS L KFL + KSG+VDRVLSWA+FKQ +L+R GG+K + + G PKLDDAN AG+ AK++DCTLI+TEGDSAK+LA+SGLS+VGRD YGVFP Sbjct: 8 PFGFEKINDRWEIGIGMSDGQFSQVSFVNSICTLKGGQHTNHVAEKVIAKLSTVIKKKNKGEEVKAHVIKNHLAVYVNCLIENPSFDSQTKESLTTRPKAFGSVVQLSDKFLKTIEKSGIVDRVLSWAQFKQNEQLKRKGGSKSSKIKGCPKLDDANYAGT-AKSKDCTLILTEGDSAKSLAVSGLSIVGRDYYGVFP 204
BLAST of mRNA_M-pyrifera_M_contig108209.1752.1 vs. uniprot
Match: W7TC60_9STRA (DNA topoisomerase 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TC60_9STRA) HSP 1 Score: 265 bits (678), Expect = 1.200e-78 Identity = 134/198 (67.68%), Postives = 156/198 (78.79%), Query Frame = 1 Query: 4 PLLFERVNDRWEVCVTVSDGSFQQVSFVNSICTTKGGQHVTYVADQVADAVVKAASKKNKGVPLKTHHARNHLFVFVNSLIENPAFDSQTKETLTTRPRAFGSECVLGAKFL*QVLKSGVVDRVLSWAKFKQTAELRRVGGAKKATVLGIPKLDDANNAGSGAKARDCTLIVTEGDSAKALAISGLSVVGRDNYGVFP 597 P+ FERVN RWEV V +SDG FQQVSFVN ICT KGGQHV +VADQV + KKNKG +K H +NHL V+VN+LIENPAFDSQTKETLTTRP +FGS C + KFL V KS +VD V++WAKFKQ +L++ GG+KK+ VLGI KLDDAN AG+ A++ DCTLI+TEGDSAK LAISGLSVVGRD YGVFP Sbjct: 302 PIAFERVNPRWEVGVGISDGQFQQVSFVNGICTVKGGQHVNFVADQVVSKLTALVKKKNKGQEVKGHQIKNHLVVYVNALIENPAFDSQTKETLTTRPSSFGSSCSVSDKFLKTVEKSSLVDSVVNWAKFKQDEQLKKKGGSKKSKVLGITKLDDANFAGT-ARSSDCTLILTEGDSAKTLAISGLSVVGRDYYGVFP 498
BLAST of mRNA_M-pyrifera_M_contig108209.1752.1 vs. uniprot
Match: A0A4P9YWT0_9FUNG (DNA topoisomerase 2 n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YWT0_9FUNG) HSP 1 Score: 253 bits (646), Expect = 4.140e-78 Identity = 123/197 (62.44%), Postives = 154/197 (78.17%), Query Frame = 1 Query: 7 LLFERVNDRWEVCVTVSDGSFQQVSFVNSICTTKGGQHVTYVADQVADAVVKAASKKNKGVPLKTHHARNHLFVFVNSLIENPAFDSQTKETLTTRPRAFGSECVLGAKFL*QVLKSGVVDRVLSWAKFKQTAELRRVGGAKKATVLGIPKLDDANNAGSGAKARDCTLIVTEGDSAKALAISGLSVVGRDNYGVFP 597 ++ + VN RWEV TVSDG FQQVSFVN ICT+KGG HV YVADQ+ +V+A KKNK P+K ++H++VFVN+LIENPAFDSQTKE +T R AFGS+C + +F+ ++LKSGVV+ VLSWA+FKQ +L++ G KK+ + GI KL+DANNAG+ CTLI+TEGDSAKALA+SGLSVVGRDNYGVFP Sbjct: 290 IIHQIVNQRWEVAFTVSDGQFQQVSFVNGICTSKGGTHVNYVADQIVSKLVEAIKKKNKAAPVKPFQVKSHMWVFVNALIENPAFDSQTKENMTLRASAFGSKCEMPEEFIKKILKSGVVENVLSWARFKQDQQLKKTDGHKKSRISGIVKLEDANNAGT-RNGHKCTLILTEGDSAKALAVSGLSVVGRDNYGVFP 485
BLAST of mRNA_M-pyrifera_M_contig108209.1752.1 vs. uniprot
Match: A0A1Y2ABG4_9FUNG (DNA topoisomerase 2 n=2 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2ABG4_9FUNG) HSP 1 Score: 263 bits (671), Expect = 7.360e-78 Identity = 123/197 (62.44%), Postives = 159/197 (80.71%), Query Frame = 1 Query: 7 LLFERVNDRWEVCVTVSDGSFQQVSFVNSICTTKGGQHVTYVADQVADAVVKAASKKNKGVPLKTHHARNHLFVFVNSLIENPAFDSQTKETLTTRPRAFGSECVLGAKFL*QVLKSGVVDRVLSWAKFKQTAELRRVGGAKKATVLGIPKLDDANNAGSGAKARDCTLIVTEGDSAKALAISGLSVVGRDNYGVFP 597 +++ERVN+RWE+ ++SDG FQQVSFVNSICT KGG HV YVADQ+ ++ + KKNK + +K +NHL+VF+NSLIENPAFDSQTKETLT R +FGS C + F+ +V+KSGV+D +LSWAK+KQ+ L++ G K++ + GIPKLDDANNAG+ +++DC LI+TEGDSAKALAISGL+VVGRDNYGVFP Sbjct: 382 IIYERVNERWEIAFSMSDGQFQQVSFVNSICTVKGGTHVNYVADQITSKLIDSLKKKNKNLSIKPFQVKNHLWVFINSLIENPAFDSQTKETLTLRASSFGSRCPVSDNFINKVMKSGVIDNILSWAKYKQSQMLKKTDGHKRSRISGIPKLDDANNAGT-KRSKDCVLILTEGDSAKALAISGLTVVGRDNYGVFP 577
BLAST of mRNA_M-pyrifera_M_contig108209.1752.1 vs. uniprot
Match: A0A1D6HGY3_MAIZE (DNA topoisomerase 2 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6HGY3_MAIZE) HSP 1 Score: 249 bits (636), Expect = 2.180e-77 Identity = 122/196 (62.24%), Postives = 157/196 (80.10%), Query Frame = 1 Query: 10 LFERVNDRWEVCVTVSDGSFQQVSFVNSICTTKGGQHVTYVADQVADAVVKAASKKNKGVPLKTHHARNHLFVFVNSLIENPAFDSQTKETLTTRPRAFGSECVLGAKFL*QVLKSGVVDRVLSWAKFKQTAELRRVGGAKKATVLGIPKLDDANNAGSGAKARDCTLIVTEGDSAKALAISGLSVVGRDNYGVFP 597 ++E+VNDRWEVCV+ S+G FQQVSFVN I T +GG HV YV +Q+A+ VV +KKNK +K H+ ++HL+VFVN+LI+NPAFDSQTKETLTTR +FGS+C L + FL +V KSGV++ VLSWA FK + EL++ G+KK+ + GIPKL+DAN AG G + CTLI+TEGDSAKALA+SG++VVGRD YGVFP Sbjct: 18 IYEQVNDRWEVCVSQSEGQFQQVSFVNRIATIRGGSHVDYVTNQIANHVVAIVNKKNKNANMKLHNVKSHLWVFVNALIDNPAFDSQTKETLTTRQGSFGSKCELSSDFLKKVEKSGVIENVLSWADFKLSKELKKTDGSKKSRISGIPKLEDANEAG-GKDSDKCTLILTEGDSAKALAMSGIAVVGRDYYGVFP 212
BLAST of mRNA_M-pyrifera_M_contig108209.1752.1 vs. uniprot
Match: A0A7S0GR08_MICPS (DNA topoisomerase 2 (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GR08_MICPS) HSP 1 Score: 244 bits (623), Expect = 1.010e-76 Identity = 127/200 (63.50%), Postives = 152/200 (76.00%), Query Frame = 1 Query: 4 PLLFERVNDRWEVCVTVSD-GSFQQVSFVNSICTTKGGQHVTYVADQVADAVVKAASKKNKGVP-LKTHHARNHLFVFVNSLIENPAFDSQTKETLTTRPRAFGSECVLGAKFL*QVLKSGVVDRVLSWAKFKQTAELRRVGGAKKATVLGIPKLDDANNAGSGAKARDCTLIVTEGDSAKALAISGLSVVGRDNYGVFP 597 P ++E+VNDRWEVCVT+SD G FQQ SFVN ICT KGG HV VAD+VA +++ KK K LK H +NHL+VFVN+LIENPAFDSQTKETL TR FGS+ + +V+ SGVV+++LSWA FKQ+ EL++ GAKK + GIPKLDDAN+AG G + CTLI+TEGDSAKALAISGLSVVGRD YGVFP Sbjct: 149 PKIYEKVNDRWEVCVTISDSGQFQQCSFVNGICTMKGGTHVNAVADEVASKLLEKIKKKEKSCKNLKAAHVKNHLWVFVNALIENPAFDSQTKETLNTRASNFGSKYEASDACIKKVMSSGVVEQILSWASFKQSKELKKQDGAKKTRLTGIPKLDDANDAG-GRNSEHCTLILTEGDSAKALAISGLSVVGRDRYGVFP 347 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108209.1752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig108209.1752.1 >prot_M-pyrifera_M_contig108209.1752.1 ID=prot_M-pyrifera_M_contig108209.1752.1|Name=mRNA_M-pyrifera_M_contig108209.1752.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp MPLLFERVNDRWEVCVTVSDGSFQQVSFVNSICTTKGGQHVTYVADQVADback to top mRNA from alignment at M-pyrifera_M_contig108209:2..598- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig108209.1752.1 ID=mRNA_M-pyrifera_M_contig108209.1752.1|Name=mRNA_M-pyrifera_M_contig108209.1752.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=597bp|location=Sequence derived from alignment at M-pyrifera_M_contig108209:2..598- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig108209:2..598- >mRNA_M-pyrifera_M_contig108209.1752.1 ID=mRNA_M-pyrifera_M_contig108209.1752.1|Name=mRNA_M-pyrifera_M_contig108209.1752.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig108209:2..598- (Macrocystis pyrifera P11B4 male)back to top |