mRNA_M-pyrifera_M_contig108208.1751.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108208.1751.1
Unique NamemRNA_M-pyrifera_M_contig108208.1751.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108208.1751.1 vs. uniprot
Match: R1D492_EMIHU (Ephrin_rec_like domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D492_EMIHU)

HSP 1 Score: 52.4 bits (124), Expect = 4.020e-6
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:    1 NDVWVLDPESWEWAEVQPAGRGPEPRAFHSAVAQGETMLVLGGVGEFAGFPLDVLHILDLSDESAAQWTALR 216
            +DVW ++  + EW  V+ A   P  RAFH+A A GE MLV GGV +  G  L+ L  L +S     QW  LR
Sbjct:  366 SDVWEVNAATGEWRAVK-AAVPPRGRAFHTATAVGEAMLVFGGV-DAQGETLNDLWALHVSTVVGTQWAELR 435
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108208.1751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R1D492_EMIHU4.020e-643.06Ephrin_rec_like domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108208contigM-pyrifera_M_contig108208:57..272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.1388173-CDS-M-pyrifera_M_contig108208:56..2721622815592.1388173-CDS-M-pyrifera_M_contig108208:56..272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108208 57..272 +
1692277478.2415528-CDS-M-pyrifera_M_contig108208:56..2721692277478.2415528-CDS-M-pyrifera_M_contig108208:56..272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108208 57..272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108208.1751.1prot_M-pyrifera_M_contig108208.1751.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108208 57..272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108208.1751.1

>prot_M-pyrifera_M_contig108208.1751.1 ID=prot_M-pyrifera_M_contig108208.1751.1|Name=mRNA_M-pyrifera_M_contig108208.1751.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
NDVWVLDPESWEWAEVQPAGRGPEPRAFHSAVAQGETMLVLGGVGEFAGF
PLDVLHILDLSDESAAQWTALR
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mRNA from alignment at M-pyrifera_M_contig108208:57..272+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108208.1751.1 ID=mRNA_M-pyrifera_M_contig108208.1751.1|Name=mRNA_M-pyrifera_M_contig108208.1751.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig108208:57..272+ (Macrocystis pyrifera P11B4 male)
AATGACGTGTGGGTGCTGGACCCAGAATCGTGGGAGTGGGCTGAGGTGCA
GCCGGCTGGAAGGGGTCCGGAGCCAAGAGCGTTTCATAGCGCCGTGGCCC
AGGGAGAAACCATGTTGGTGCTGGGAGGCGTTGGAGAGTTTGCTGGATTC
CCTCTCGATGTGCTGCACATCCTAGACCTCTCTGACGAATCTGCAGCCCA
GTGGACAGCGCTGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108208:57..272+

>mRNA_M-pyrifera_M_contig108208.1751.1 ID=mRNA_M-pyrifera_M_contig108208.1751.1|Name=mRNA_M-pyrifera_M_contig108208.1751.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig108208:57..272+ (Macrocystis pyrifera P11B4 male)
AATGACGTGTGGGTGCTGGACCCAGAATCGTGGGAGTGGGCTGAGGTGCA
GCCGGCTGGAAGGGGTCCGGAGCCAAGAGCGTTTCATAGCGCCGTGGCCC
AGGGAGAAACCATGTTGGTGCTGGGAGGCGTTGGAGAGTTTGCTGGATTC
CCTCTCGATGTGCTGCACATCCTAGACCTCTCTGACGAATCTGCAGCCCA
GTGGACAGCGCTGCGAAATGACGTGTGGGTGCTGGACCCAGAATCGTGGG
AGTGGGCTGAGGTGCAGCCGGCTGGAAGGGGTCCGGAGCCAAGAGCGTTT
CATAGCGCCGTGGCCCAGGGAGAAACCATGTTGGTGCTGGGAGGCGTTGG
AGAGTTTGCTGGATTCCCTCTCGATGTGCTGCACATCCTAGACCTCTCTG
ACGAATCTGCAGCCCAGTGGACAGCGCTGCGA
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