mRNA_M-pyrifera_M_contig108206.1750.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108206.1750.1
Unique NamemRNA_M-pyrifera_M_contig108206.1750.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108206.1750.1 vs. uniprot
Match: A0A7S0JY37_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JY37_CAFRO)

HSP 1 Score: 87.0 bits (214), Expect = 8.460e-20
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 GLQIPEIENLAATKDEFDAIDLSDNLISRVENFPVLRRLRTLLLSGNAVTWVDVEVGEKLPGLESLVLTKNHVSSLA 231
            GL I  IENL+AT+D+FD +DL++N I R+ENFP LRRL+TLL SGN ++ +   +GE LP L++LVL  N +S+LA
Sbjct:   28 GLGISVIENLSATRDQFDCLDLTENQIRRLENFPRLRRLQTLLASGNFISRISPRLGEFLPKLDTLVLAGNRISTLA 104          
BLAST of mRNA_M-pyrifera_M_contig108206.1750.1 vs. uniprot
Match: A0A251UTI5_HELAN (Putative U2 small nuclear ribonucleoprotein A n=3 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251UTI5_HELAN)

HSP 1 Score: 89.0 bits (219), Expect = 9.700e-20
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 GLQIPEIENLAATKDEFDAIDLSDNLISRVENFPVLRRLRTLLLSGNAVTWVDVEVGEKLPGLESLVLTKNHVSSL 228
            G +IPEIENL AT+D+FD IDLSDN I ++ENFP L RL TLLL+ N +T ++  +GE LP L SLVLT N + +L
Sbjct:   28 GNKIPEIENLGATEDQFDTIDLSDNEIVKLENFPNLNRLGTLLLNNNRITRINPNIGEFLPKLHSLVLTNNRLVNL 103          
BLAST of mRNA_M-pyrifera_M_contig108206.1750.1 vs. uniprot
Match: A0A1I8BA30_MELHA (Uncharacterized protein n=1 Tax=Meloidogyne hapla TaxID=6305 RepID=A0A1I8BA30_MELHA)

HSP 1 Score: 87.8 bits (216), Expect = 1.700e-19
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    4 LQIPEIENLAATKDEFDAIDLSDNLISRVENFPVLRRLRTLLLSGNAVTWVDVEVGEKLPGLESLVLTKNHVSSL 228
            LQIP IENL  TKD+FD IDLSDN I ++EN P L+RL TLLL  N V ++  ++GE LP L +L LT N++S L
Sbjct:   29 LQIPTIENLGVTKDQFDVIDLSDNNIRKLENMPKLKRLETLLLHNNRVEFIAKDIGENLPKLSTLALTNNNLSEL 103          
BLAST of mRNA_M-pyrifera_M_contig108206.1750.1 vs. uniprot
Match: A0A6V7WG98_9BILA (Hypothetical protein n=3 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7WG98_9BILA)

HSP 1 Score: 86.7 bits (213), Expect = 4.710e-19
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    4 LQIPEIENLAATKDEFDAIDLSDNLISRVENFPVLRRLRTLLLSGNAVTWVDVEVGEKLPGLESLVLTKNHVSSL 228
            LQIP IENL  TKD+FD IDLSDN I ++EN P L+RL TLL+  N V ++  ++GE LP L +L LT N++S L
Sbjct:   29 LQIPTIENLGVTKDQFDVIDLSDNNIRKLENLPKLKRLETLLVHNNRVEFIAKDIGENLPKLSTLALTNNNLSEL 103          
BLAST of mRNA_M-pyrifera_M_contig108206.1750.1 vs. uniprot
Match: A0A5N6LEK6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LEK6_9ASTR)

HSP 1 Score: 89.0 bits (219), Expect = 6.360e-19
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 GLQIPEIENLAATKDEFDAIDLSDNLISRVENFPVLRRLRTLLLSGNAVTWVDVEVGEKLPGLESLVLTKNHVSSL 228
            G +IPEIENL AT+D+FD IDLSDN I ++ENFP L RL TLLL+ N +T ++  +GE LP L SLVLT N + +L
Sbjct:  370 GNKIPEIENLGATEDQFDTIDLSDNEIVKLENFPNLNRLGTLLLNNNRITRINPNIGEFLPKLHSLVLTNNRLVNL 445          
BLAST of mRNA_M-pyrifera_M_contig108206.1750.1 vs. uniprot
Match: A0A2H9TFQ1_9FUNG (NAD(P)H-hydrate epimerase n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TFQ1_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 6.540e-19
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    7 QIPEIENLAATKDEFDAIDLSDNLISRVENFPVLRRLRTLLLSGNAVTWVDVEVGEKLPGLESLVLTKNHVSSL 228
            +IP IENLA T+D++D +DL+DN I R+ENFP LRRLRTLL+S N +T +D+E+ +KLP LE LVL  N + ++
Sbjct: 1078 KIPAIENLAITRDQYDTLDLTDNDIPRLENFPTLRRLRTLLVSNNKITRLDLEMMQKLPALEMLVLNNNPLGTV 1151          
BLAST of mRNA_M-pyrifera_M_contig108206.1750.1 vs. uniprot
Match: A0A5A8BZG2_CAFRO (LRRcap domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8BZG2_CAFRO)

HSP 1 Score: 87.0 bits (214), Expect = 6.650e-19
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 GLQIPEIENLAATKDEFDAIDLSDNLISRVENFPVLRRLRTLLLSGNAVTWVDVEVGEKLPGLESLVLTKNHVSSLA 231
            GL I  IENL+AT+D+FD +DL++N I R+ENFP LRRL+TLL SGN ++ +   +GE LP L++LVL  N +S+LA
Sbjct:   27 GLGISVIENLSATRDQFDCLDLTENQIRRLENFPRLRRLQTLLASGNFISRISPRLGEFLPKLDTLVLAGNRISTLA 103          
BLAST of mRNA_M-pyrifera_M_contig108206.1750.1 vs. uniprot
Match: UPI00053A2A8A (U2 small nuclear ribonucleoprotein A' isoform X2 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A2A8A)

HSP 1 Score: 85.5 bits (210), Expect = 8.400e-19
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 GLQIPEIENLAATKDEFDAIDLSDNLISRVENFPVLRRLRTLLLSGNAVTWVDVEVGEKLPGLESLVLTKNHVSSL 228
            G +IP IENL AT+D+FD IDLSDN I ++ENFP L RL TLL++ N +T ++  +GE LP L SLVLT N + +L
Sbjct:   28 GNKIPVIENLGATEDQFDTIDLSDNEIVKLENFPYLNRLGTLLINNNRITRINPNLGEFLPKLHSLVLTNNRLVNL 103          
BLAST of mRNA_M-pyrifera_M_contig108206.1750.1 vs. uniprot
Match: A0A7E4ZUW0_PANRE (Uncharacterized protein n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4ZUW0_PANRE)

HSP 1 Score: 86.3 bits (212), Expect = 9.540e-19
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    4 LQIPEIENLAATKDEFDAIDLSDNLISRVENFPVLRRLRTLLLSGNAVTWVDVEVGEKLPGLESLVLTKNHVSSL 228
            +QIP IENL  TKD FD +DL+DN I ++ENFPVLRRL  LLL  N +  +   +G +LP L++LVLT N++  L
Sbjct:   29 MQIPAIENLGVTKDRFDVLDLTDNNIRKLENFPVLRRLEVLLLHNNRIQQIQKHIGRQLPSLKTLVLTNNNLQEL 103          
BLAST of mRNA_M-pyrifera_M_contig108206.1750.1 vs. uniprot
Match: A0A0L0HNE8_SPIPD (U2 small nuclear ribonucleoprotein A' n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HNE8_SPIPD)

HSP 1 Score: 85.9 bits (211), Expect = 1.100e-18
Identity = 34/76 (44.74%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    1 GLQIPEIENLAATKDEFDAIDLSDNLISRVENFPVLRRLRTLLLSGNAVTWVDVEVGEKLPGLESLVLTKNHVSSL 228
            GL+IP++ENLA TKD  D +DL+DN + R++ FP+++RL+ L++S N +T +D+++ ++LP L +L+L  NH+  L
Sbjct:   28 GLKIPQVENLAITKDSHDVVDLTDNDLRRLDGFPLMKRLKALMVSNNRITRIDLDLAKQLPNLNTLILNNNHIEEL 103          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108206.1750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0JY37_CAFRO8.460e-2055.84Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A251UTI5_HELAN9.700e-2059.21Putative U2 small nuclear ribonucleoprotein A n=3 ... [more]
A0A1I8BA30_MELHA1.700e-1957.33Uncharacterized protein n=1 Tax=Meloidogyne hapla ... [more]
A0A6V7WG98_9BILA4.710e-1956.00Hypothetical protein n=3 Tax=Meloidogyne enterolob... [more]
A0A5N6LEK6_9ASTR6.360e-1959.21Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A2H9TFQ1_9FUNG6.540e-1956.76NAD(P)H-hydrate epimerase n=1 Tax=Paramicrosporidi... [more]
A0A5A8BZG2_CAFRO6.650e-1955.84LRRcap domain-containing protein n=3 Tax=Cafeteria... [more]
UPI00053A2A8A8.400e-1956.58U2 small nuclear ribonucleoprotein A' isoform X2 n... [more]
A0A7E4ZUW0_PANRE9.540e-1953.33Uncharacterized protein n=1 Tax=Panagrellus redivi... [more]
A0A0L0HNE8_SPIPD1.100e-1844.74U2 small nuclear ribonucleoprotein A' n=2 Tax=Spiz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108206contigM-pyrifera_M_contig108206:4..584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.4
Seed ortholog evalue3.1e-15
Seed eggNOG ortholog90675.XP_010475823.1
KEGG koko:K11092
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0010467,GO:0015030,GO:0016070,GO:0016071,GO:0016604,GO:0031974,GO:0031981,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0070013,GO:0071704,GO:0090304,GO:1901360
EggNOG free text desc.U2 small nuclear ribonucleoprotein
EggNOG OGs37HHM@33090,3GB4R@35493,3HNY4@3699,COG4886@1,KOG1644@2759
COG Functional cat.A
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.0944297-CDS-M-pyrifera_M_contig108206:3..1921622815592.0944297-CDS-M-pyrifera_M_contig108206:3..192Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108206 4..192 -
1692277478.2187226-CDS-M-pyrifera_M_contig108206:3..1921692277478.2187226-CDS-M-pyrifera_M_contig108206:3..192Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108206 4..192 -
1622815592.1043365-CDS-M-pyrifera_M_contig108206:542..5841622815592.1043365-CDS-M-pyrifera_M_contig108206:542..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108206 543..584 -
1692277478.231464-CDS-M-pyrifera_M_contig108206:542..5841692277478.231464-CDS-M-pyrifera_M_contig108206:542..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108206 543..584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108206.1750.1prot_M-pyrifera_M_contig108206.1750.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108206 4..584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108206.1750.1

>prot_M-pyrifera_M_contig108206.1750.1 ID=prot_M-pyrifera_M_contig108206.1750.1|Name=mRNA_M-pyrifera_M_contig108206.1750.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
GLQIPEIENLAATKDEFDAIDLSDNLISRVENFPVLRRLRTLLLSGNAVT
WVDVEVGEKLPGLESLVLTKNHVSSLA
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mRNA from alignment at M-pyrifera_M_contig108206:4..584-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108206.1750.1 ID=mRNA_M-pyrifera_M_contig108206.1750.1|Name=mRNA_M-pyrifera_M_contig108206.1750.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=581bp|location=Sequence derived from alignment at M-pyrifera_M_contig108206:4..584- (Macrocystis pyrifera P11B4 male)
GGATTGCAAATTCCAGAAATTGAAAATCTAGCAGCTACCAAAGTAAGGTT GGTGAGGGGGAATTGTGGTAGTTTGAAGGAGAAAGGGGTTGTTGGGGTTG GTATGAGTTGGAGACGGTTGTTTTGAGAGTGGAGAGTGCATTTGGATGGG TGATGGTGGGTTGATGGGCAGGTATGGAGTGGGTGGACTGGGTTGGGCGA TTGTTGGGAGGGAGAGTGTTGGGTATTAGGGGATAGTTTGGTTTGGAAAT TTGGAAAGGGAGGAAAAGGGGGTTTGGGAGGGGGTGGGAGAGGAGGAGTG GTGGATATGAGTGGGTAGAGCTTGTCAACATACTCTCACAATTACACCCA CCCCCCCAAAACTCTCTCTATTGTGTTTTCTTTGGATGATAGGATGAATT CGATGCGATAGACTTGAGTGATAACTTGATTTCTCGTGTGGAGAACTTTC CTGTGTTACGTCGGTTGCGAACGTTGTTGTTGAGTGGGAATGCGGTGACA TGGGTGGATGTGGAGGTTGGGGAGAAGTTGCCTGGATTGGAGAGCTTGGT TCTCACAAAGAACCACGTGTCTTCCCTTGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108206:4..584-

>mRNA_M-pyrifera_M_contig108206.1750.1 ID=mRNA_M-pyrifera_M_contig108206.1750.1|Name=mRNA_M-pyrifera_M_contig108206.1750.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig108206:4..584- (Macrocystis pyrifera P11B4 male)
GGATTGCAAATTCCAGAAATTGAAAATCTAGCAGCTACCAAAGGATTGCA
AATTCCAGAAATTGAAAATCTAGCAGCTACCAAAGATGAATTCGATGCGA
TAGACTTGAGTGATAACTTGATTTCTCGTGTGGAGAACTTTCCTGTGTTA
CGTCGGTTGCGAACGTTGTTGTTGAGTGGGAATGCGGTGACATGGGTGGA
TGTGGAGGTTGGGGAGAAGTTGCCTGGATTGGAGAGCTTGGTTCTCACAA
AGAACCACGTGTCTTCCCTTGCGGATGAATTCGATGCGATAGACTTGAGT
GATAACTTGATTTCTCGTGTGGAGAACTTTCCTGTGTTACGTCGGTTGCG
AACGTTGTTGTTGAGTGGGAATGCGGTGACATGGGTGGATGTGGAGGTTG
GGGAGAAGTTGCCTGGATTGGAGAGCTTGGTTCTCACAAAGAACCACGTG
TCTTCCCTTGCG
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