mRNA_M-pyrifera_M_contig108204.1749.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108204.1749.1
Unique NamemRNA_M-pyrifera_M_contig108204.1749.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108204.1749.1 vs. uniprot
Match: A0A5A8E2V8_CAFRO (Ion_trans domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2V8_CAFRO)

HSP 1 Score: 135 bits (341), Expect = 3.120e-34
Identity = 80/143 (55.94%), Postives = 107/143 (74.83%), Query Frame = 1 
Query:    1 LTIFRVLRLAXXXXXXXXXXYSRSMMLLGKVFVASADALLVLLWFVAIGLIVFGALLFLTEGGVWDEDAQAFMRPNKEGTAMEPSPIDSIPAAFWLVIVTASTTGYGDVVATTGMGRAISSIIMLAGILVLALPVTILGAHFS 429
            LT+FR+LRL   XXXXX    S ++ L+ KV VAS DAL ++++F+AIG+I+FGAL+++ EGG +DE   AF+R N+ GT  E +P DSIPA  W VIVT +T GYGD V T+ +GR I+ ++ L GILVLALPVTILGA+F+
Sbjct:  530 LTVFRILRLGRVXXXXXLGKSSATLQLMAKVMVASVDALSIIIFFIAIGVILFGALIWIAEGGEYDEAEGAFLRLNEFGTGRERTPFDSIPATAWFVIVTLTTLGYGDQVPTSTLGRFIAGLLALVGILVLALPVTILGANFA 672
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BLAST of mRNA_M-pyrifera_M_contig108204.1749.1 vs. uniprot
Match: A0A5A8DTP4_CAFRO (Ion_trans domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DTP4_CAFRO)

HSP 1 Score: 135 bits (341), Expect = 3.170e-34
Identity = 80/143 (55.94%), Postives = 107/143 (74.83%), Query Frame = 1 
Query:    1 LTIFRVLRLAXXXXXXXXXXYSRSMMLLGKVFVASADALLVLLWFVAIGLIVFGALLFLTEGGVWDEDAQAFMRPNKEGTAMEPSPIDSIPAAFWLVIVTASTTGYGDVVATTGMGRAISSIIMLAGILVLALPVTILGAHFS 429
            LT+FR+LRL   XXXXX    S ++ L+ KV VAS DAL ++++F+AIG+I+FGAL+++ EGG +DE   AF+R N+ GT  E +P DSIPA  W VIVT +T GYGD V T+ +GR I+ ++ L GILVLALPVTILGA+F+
Sbjct:  604 LTVFRILRLGRVXXXXXLGKSSATLQLMAKVMVASVDALSIIIFFIAIGVILFGALIWIAEGGEYDEAEGAFLRLNEFGTGRERTPFDSIPATAWFVIVTLTTLGYGDQVPTSTLGRFIAGLLALVGILVLALPVTILGANFA 746
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BLAST of mRNA_M-pyrifera_M_contig108204.1749.1 vs. uniprot
Match: A0A5A8EJN2_CAFRO (Ion_trans domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EJN2_CAFRO)

HSP 1 Score: 135 bits (341), Expect = 3.220e-34
Identity = 80/143 (55.94%), Postives = 107/143 (74.83%), Query Frame = 1 
Query:    1 LTIFRVLRLAXXXXXXXXXXYSRSMMLLGKVFVASADALLVLLWFVAIGLIVFGALLFLTEGGVWDEDAQAFMRPNKEGTAMEPSPIDSIPAAFWLVIVTASTTGYGDVVATTGMGRAISSIIMLAGILVLALPVTILGAHFS 429
            LT+FR+LRL   XXXXX    S ++ L+ KV VAS DAL ++++F+AIG+I+FGAL+++ EGG +DE   AF+R N+ GT  E +P DSIPA  W VIVT +T GYGD V T+ +GR I+ ++ L GILVLALPVTILGA+F+
Sbjct:  816 LTVFRILRLGRVXXXXXLGKSSATLQLMAKVMVASVDALSIIIFFIAIGVILFGALIWIAEGGEYDEAEGAFLRLNEFGTGRERTPFDSIPATAWFVIVTLTTLGYGDQVPTSTLGRFIAGLLALVGILVLALPVTILGANFA 958
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BLAST of mRNA_M-pyrifera_M_contig108204.1749.1 vs. uniprot
Match: A0A7S0K4D6_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K4D6_CAFRO)

HSP 1 Score: 126 bits (317), Expect = 5.220e-31
Identity = 68/122 (55.74%), Postives = 93/122 (76.23%), Query Frame = 1 
Query:   64 SRSMMLLGKVFVASADALLVLLWFVAIGLIVFGALLFLTEGGVWDEDAQAFMRPNKEGTAMEPSPIDSIPAAFWLVIVTASTTGYGDVVATTGMGRAISSIIMLAGILVLALPVTILGAHFS 429
            S ++ L+ KV VAS DAL ++++F+AIG+I+FGAL+++ EGG +DE   AF+R N+ GT  E +P DSIPA  W VIVT +T GYGD V T+ +GR I+ ++ L GILVLALPVTILGA+F+
Sbjct:   16 SATLQLMAKVMVASVDALSIIIFFIAIGVILFGALIWIAEGGEYDEAEGAFLRLNEFGTGRERTPFDSIPATAWFVIVTLTTLGYGDQVPTSTLGRFIAGLLALVGILVLALPVTILGANFA 137
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BLAST of mRNA_M-pyrifera_M_contig108204.1749.1 vs. uniprot
Match: A0A812Z2F8_9DINO (Sh protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Z2F8_9DINO)

HSP 1 Score: 125 bits (314), Expect = 1.300e-30
Identity = 75/144 (52.08%), Postives = 107/144 (74.31%), Query Frame = 1 
Query:    1 LTIFRVLRLAXXXXXXXXXXYSRSMMLLGKVFVASADALLVLLWFVAIGLIVFGALLFLTEGGVWDEDAQAFMRPNKEGTAMEPSPIDSIPAAFWLVIVTASTTGYGDVVATTGMGRAISSIIMLAGILVLALPVTILGAHFSI 432
            LT+FR+L   XXXXXXXXXX  + M ++G+V +ASADA+ +LL+F+AIG++VFG+++F  E G +D     +MR    G   EP+P  SIP AFW VIVTA+T GYG++V T+ +G+ +  ++MLAGILVLALP+T+ GA F++
Sbjct:   59 LTVFRILXXXXXXXXXXXXXXXKGMQMMGRVIMASADAMGLLLFFIAIGVVVFGSIMFFAEAGEYDAATGVYMRTTFTGDGKEPTPFTSIPMAFWYVIVTATTVGYGEMVPTSTVGQLVGVLVMLAGILVLALPITVFGAQFAV 202
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BLAST of mRNA_M-pyrifera_M_contig108204.1749.1 vs. uniprot
Match: A0A7S2CZE1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CZE1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.530e-26
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 1 
Query:   61 YSRSMMLLGKVFVASADALLVLLWFVAIGLIVFGALLFLTEGGVW----DEDAQAFMRPNKEGTAMEPSPIDSIPAAFWLVIVTASTTGYGDVVATTGMGRAISSIIMLAGILVLALPVTILGAHFS 429
            YS+ M LL  V + SA AL +L +F  IG+I+FG+++F  E G W    D    A++R +  GTA EPSP  SIP  FW VIVT +T GYGD+   T  G+A+ SI M++GILVLALP+TI+GA+FS
Sbjct:  355 YSKGMSLLTNVLLLSAPALKLLCFFSLIGMILFGSMVFFCEQGEWMVTADYPDGAYLRRDVTGTAFEPSPFVSIPTCFWWVIVTQTTVGYGDMYPVTDAGKAVGSICMVSGILVLALPITIIGANFS 481
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BLAST of mRNA_M-pyrifera_M_contig108204.1749.1 vs. uniprot
Match: A0A5A8EB86_CAFRO (Ion_trans domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EB86_CAFRO)

HSP 1 Score: 107 bits (268), Expect = 3.260e-25
Identity = 54/117 (46.15%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:   79 LLGKVFVASADALLVLLWFVAIGLIVFGALLFLTEGGVWDEDAQAFMRPNKEGTAMEPSPIDSIPAAFWLVIVTASTTGYGDVVATTGMGRAISSIIMLAGILVLALPVTILGAHFS 429
            ++ K    SA AL +  +FV +G+++FGA++F +E G +D+ +  ++RP+  GT +E SP  SI AAFW  IVTASTTGYGD+V T  +G+ ++S + +AGI+VLALP++I+G++F+
Sbjct:   59 IISKALAKSAYALFLTFFFVFLGIVLFGAIMFYSESGEFDQASGLWLRPDTTGTGVEESPFSSIMAAFWFCIVTASTTGYGDLVPTGLIGKVVASCLQIAGIIVLALPISIIGSNFT 175
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BLAST of mRNA_M-pyrifera_M_contig108204.1749.1 vs. uniprot
Match: A0A5A8DW20_CAFRO (Ion_trans domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DW20_CAFRO)

HSP 1 Score: 107 bits (268), Expect = 1.660e-24
Identity = 54/117 (46.15%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:   79 LLGKVFVASADALLVLLWFVAIGLIVFGALLFLTEGGVWDEDAQAFMRPNKEGTAMEPSPIDSIPAAFWLVIVTASTTGYGDVVATTGMGRAISSIIMLAGILVLALPVTILGAHFS 429
            ++ K    SA AL +  +FV +G+++FGA++F +E G +D+ +  ++RP+  GT +E SP  SI AAFW  IVTASTTGYGD+V T  +G+ ++S + +AGI+VLALP++I+G++F+
Sbjct:  215 IISKALAKSAYALFLTFFFVFLGIVLFGAIMFYSESGEFDQASGLWLRPDTTGTGVEESPFSSIMAAFWFCIVTASTTGYGDLVPTGLIGKVVASCLQIAGIIVLALPISIIGSNFT 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig108204.1749.1 vs. uniprot
Match: A0A7S0JTL1_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JTL1_CAFRO)

HSP 1 Score: 107 bits (268), Expect = 2.040e-24
Identity = 54/117 (46.15%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:   79 LLGKVFVASADALLVLLWFVAIGLIVFGALLFLTEGGVWDEDAQAFMRPNKEGTAMEPSPIDSIPAAFWLVIVTASTTGYGDVVATTGMGRAISSIIMLAGILVLALPVTILGAHFS 429
            ++ K    SA AL +  +FV +G+++FGA++F +E G +D+ +  ++RP+  GT +E SP  SI AAFW  IVTASTTGYGD+V T  +G+ ++S + +AGI+VLALP++I+G++F+
Sbjct:  199 IISKALAKSAYALFLTFFFVFLGIVLFGAIMFYSESGEFDQASGLWLRPDTTGTGVEESPFSSIMAAFWFCIVTASTTGYGDLVPTGLIGKVVASCLQIAGIIVLALPISIIGSNFT 315
[Close]
BLAST of mRNA_M-pyrifera_M_contig108204.1749.1 vs. uniprot
Match: A0A5A8CSR4_CAFRO (Ion_trans domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CSR4_CAFRO)

HSP 1 Score: 107 bits (268), Expect = 2.040e-24
Identity = 54/117 (46.15%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:   79 LLGKVFVASADALLVLLWFVAIGLIVFGALLFLTEGGVWDEDAQAFMRPNKEGTAMEPSPIDSIPAAFWLVIVTASTTGYGDVVATTGMGRAISSIIMLAGILVLALPVTILGAHFS 429
            ++ K    SA AL +  +FV +G+++FGA++F +E G +D+ +  ++RP+  GT +E SP  SI AAFW  IVTASTTGYGD+V T  +G+ ++S + +AGI+VLALP++I+G++F+
Sbjct:  215 IISKALAKSAYALFLTFFFVFLGIVLFGAIMFYSESGEFDQASGLWLRPDTTGTGVEESPFSSIMAAFWFCIVTASTTGYGDLVPTGLIGKVVASCLQIAGIIVLALPISIIGSNFT 331
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108204.1749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E2V8_CAFRO3.120e-3455.94Ion_trans domain-containing protein n=1 Tax=Cafete... [more]
A0A5A8DTP4_CAFRO3.170e-3455.94Ion_trans domain-containing protein n=1 Tax=Cafete... [more]
A0A5A8EJN2_CAFRO3.220e-3455.94Ion_trans domain-containing protein n=2 Tax=Cafete... [more]
A0A7S0K4D6_CAFRO5.220e-3155.74Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A812Z2F8_9DINO1.300e-3052.08Sh protein (Fragment) n=1 Tax=Symbiodinium sp. KB8... [more]
A0A7S2CZE1_9STRA3.530e-2651.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5A8EB86_CAFRO3.260e-2546.15Ion_trans domain-containing protein n=1 Tax=Cafete... [more]
A0A5A8DW20_CAFRO1.660e-2446.15Ion_trans domain-containing protein n=1 Tax=Cafete... [more]
A0A7S0JTL1_CAFRO2.040e-2446.15Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A5A8CSR4_CAFRO2.040e-2446.15Ion_trans domain-containing protein n=2 Tax=Cafete... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108204contigM-pyrifera_M_contig108204:51..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score94.7
Seed ortholog evalue3.6e-17
Seed eggNOG ortholog78898.MVEG_00898T0
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Mortierella verticillata NRRL 6337
EggNOG OGs1GWKC@112252,38EP9@33154,3Q5CH@4751,COG2126@1,KOG4390@2759
COG Functional cat.P
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.0593977-CDS-M-pyrifera_M_contig108204:50..4821622815592.0593977-CDS-M-pyrifera_M_contig108204:50..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108204 51..482 +
1692277478.204593-CDS-M-pyrifera_M_contig108204:50..4821692277478.204593-CDS-M-pyrifera_M_contig108204:50..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108204 51..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108204.1749.1prot_M-pyrifera_M_contig108204.1749.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108204 51..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108204.1749.1

>prot_M-pyrifera_M_contig108204.1749.1 ID=prot_M-pyrifera_M_contig108204.1749.1|Name=mRNA_M-pyrifera_M_contig108204.1749.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
LTIFRVLRLARVFRIFKLSKYSRSMMLLGKVFVASADALLVLLWFVAIGL
IVFGALLFLTEGGVWDEDAQAFMRPNKEGTAMEPSPIDSIPAAFWLVIVT
ASTTGYGDVVATTGMGRAISSIIMLAGILVLALPVTILGAHFSI
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mRNA from alignment at M-pyrifera_M_contig108204:51..482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108204.1749.1 ID=mRNA_M-pyrifera_M_contig108204.1749.1|Name=mRNA_M-pyrifera_M_contig108204.1749.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig108204:51..482+ (Macrocystis pyrifera P11B4 male)
TTGACTATTTTCCGTGTGCTTCGTCTCGCACGGGTCTTTCGGATCTTCAA
ACTTTCCAAGTACTCGCGAAGCATGATGTTGCTTGGAAAAGTGTTTGTAG
CATCTGCTGATGCCCTTCTTGTGTTGTTATGGTTTGTTGCCATTGGTTTG
ATTGTCTTTGGTGCTCTCCTCTTCCTCACCGAAGGGGGTGTTTGGGATGA
AGACGCCCAAGCATTCATGCGTCCAAACAAAGAGGGAACTGCCATGGAGC
CATCCCCGATTGATTCCATCCCAGCAGCATTTTGGTTGGTCATTGTAACA
GCTTCAACAACGGGATATGGTGATGTTGTCGCAACGACTGGCATGGGACG
CGCAATTTCATCCATTATCATGCTTGCAGGAATTCTTGTCTTGGCACTGC
CAGTCACCATTCTTGGCGCTCACTTTTCTATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108204:51..482+

>mRNA_M-pyrifera_M_contig108204.1749.1 ID=mRNA_M-pyrifera_M_contig108204.1749.1|Name=mRNA_M-pyrifera_M_contig108204.1749.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig108204:51..482+ (Macrocystis pyrifera P11B4 male)
TTGACTATTTTCCGTGTGCTTCGTCTCGCACGGGTCTTTCGGATCTTCAA
ACTTTCCAAGTACTCGCGAAGCATGATGTTGCTTGGAAAAGTGTTTGTAG
CATCTGCTGATGCCCTTCTTGTGTTGTTATGGTTTGTTGCCATTGGTTTG
ATTGTCTTTGGTGCTCTCCTCTTCCTCACCGAAGGGGGTGTTTGGGATGA
AGACGCCCAAGCATTCATGCGTCCAAACAAAGAGGGAACTGCCATGGAGC
CATCCCCGATTGATTCCATCCCAGCAGCATTTTGGTTGGTCATTGTAACA
GCTTCAACAACGGGATATGGTGATGTTGTCGCAACGACTGGCATGGGACG
CGCAATTTCATCCATTATCATGCTTGCAGGAATTCTTGTCTTGGCACTGC
CAGTCACCATTCTTGGCGCTCACTTTTCTATCTTGACTATTTTCCGTGTG
CTTCGTCTCGCACGGGTCTTTCGGATCTTCAAACTTTCCAAGTACTCGCG
AAGCATGATGTTGCTTGGAAAAGTGTTTGTAGCATCTGCTGATGCCCTTC
TTGTGTTGTTATGGTTTGTTGCCATTGGTTTGATTGTCTTTGGTGCTCTC
CTCTTCCTCACCGAAGGGGGTGTTTGGGATGAAGACGCCCAAGCATTCAT
GCGTCCAAACAAAGAGGGAACTGCCATGGAGCCATCCCCGATTGATTCCA
TCCCAGCAGCATTTTGGTTGGTCATTGTAACAGCTTCAACAACGGGATAT
GGTGATGTTGTCGCAACGACTGGCATGGGACGCGCAATTTCATCCATTAT
CATGCTTGCAGGAATTCTTGTCTTGGCACTGCCAGTCACCATTCTTGGCG
CTCACTTTTCTATC
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