mRNA_M-pyrifera_M_contig108201.1747.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108201.1747.1
Unique NamemRNA_M-pyrifera_M_contig108201.1747.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108201.1747.1 vs. uniprot
Match: A0A2D9CCA5_9BACT (Aamy domain-containing protein n=3 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CCA5_9BACT)

HSP 1 Score: 360 bits (923), Expect = 6.470e-116
Identity = 164/205 (80.00%), Postives = 184/205 (89.76%), Query Frame = 1
Query:    1 PPRDKQPTDDWGDFHNGVASGYLQSENPGGSNYNLHDGDLVALVDIAQESVNNFIRQPVEEGDPQNILAGTIFNLPNDGNYRFYPDQTLSPDIFVNPGTSRNPGAQSFTRYPFNTASPMNGDPIADNATGLLMRWAQWMIQDVGVDGFRLDAHKHIPSWFWDGFFDSAVHMARTNP-NGQKVNPFSFGENVTGNFDVLSNQIRKD 612
            PPRDKQPTDDWGDFHNGVASGYLQSE+PGG+ Y+LH+GDLVALVDIAQES N FIRQPVEEG+P NI AGTI+N P+  N RFYPDQ LSP+I  NPGTSRNPGA SFTRYP+NT++P+ GDP+ADN TG+LMRWAQWM++  GVDGFRLDAHKH+PSWFWDGFFDSAVHM RT+P  G KVNPFSFGENVTGNFD+L+NQIRKD
Sbjct:  156 PPRDKQPTDDWGDFHNGVASGYLQSEDPGGARYDLHNGDLVALVDIAQESNNTFIRQPVEEGNPLNIPAGTIWNKPDPNNARFYPDQVLSPNIVSNPGTSRNPGATSFTRYPYNTSNPLAGDPVADNGTGMLMRWAQWMVEVQGVDGFRLDAHKHVPSWFWDGFFDSAVHMTRTSPATGNKVNPFSFGENVTGNFDILNNQIRKD 360          
BLAST of mRNA_M-pyrifera_M_contig108201.1747.1 vs. uniprot
Match: A0A812XX26_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XX26_9DINO)

HSP 1 Score: 333 bits (853), Expect = 1.270e-105
Identity = 150/204 (73.53%), Postives = 168/204 (82.35%), Query Frame = 1
Query:    1 PPRDKQPTDDWGDFHNGVASGYLQSENPGGSNYNLHDGDLVALVDIAQESVNNFIRQPVEEGDPQNILAGTIFNLPNDGNYRFYPDQTLSPDIFVNPGTSRNPGAQSFTRYPFNTASPMNGDPIADNATGLLMRWAQWMIQDVGVDGFRLDAHKHIPSWFWDGFFDSAVHMARTNPNGQKVNPFSFGENVTGNFDVLSNQIRKD 612
            PPRDKQPTDDWGDFHNG A GYLQSENPG SNYNL DGDLVALVD+AQES N FIR PV  GDP NI  GTI+N+P+  N RFY DQ L+PD   NPGTSRNPG  +FTRYP+NTA P+ GD + DN TGLLMRWAQWMI+  GVDGFRLDAHKH PSWFWDGFFD+A+H  R  P+G +VNPF+FGENVTGNF++L+NQ RKD
Sbjct:  152 PPRDKQPTDDWGDFHNGNAFGYLQSENPGASNYNLLDGDLVALVDLAQESNNQFIRHPVMAGDPDNIPGGTIWNVPDPNNARFYTDQALTPDFISNPGTSRNPGTLNFTRYPYNTADPLAGDAVVDNGTGLLMRWAQWMIEVQGVDGFRLDAHKHAPSWFWDGFFDAAIHNLRVRPDGVRVNPFTFGENVTGNFEILNNQTRKD 355          
BLAST of mRNA_M-pyrifera_M_contig108201.1747.1 vs. uniprot
Match: A0A3M2CE68_9BACT (Aamy domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CE68_9BACT)

HSP 1 Score: 325 bits (832), Expect = 1.750e-102
Identity = 146/204 (71.57%), Postives = 171/204 (83.82%), Query Frame = 1
Query:    1 PPRDKQPTDDWGDFHNGVASGYLQSENPGGSNYNLHDGDLVALVDIAQESVNNFIRQPVEEGDPQNILAGTIFNLPNDGNYRFYPDQTLSPDIFVNPGTSRNPGAQSFTRYPFNTASPMNGDPIADNATGLLMRWAQWMIQDVGVDGFRLDAHKHIPSWFWDGFFDSAVHMARTNPNGQKVNPFSFGENVTGNFDVLSNQIRKD 612
            PPRDKQPTD+WGDF++G A GYLQSENPGG NY+L +GDLV L+DIA +S N FIR PV  G+PQNI +GTI+N PN  N   YPD+ L+PD F NPGTSR+PGA +F RYPFNTA PM GD +ADNATGLLMRW+QWMIQ++GVDGFRLDA KH P+WFWD +FDSA+HM RT P+G+KVNPF+FGENVTGNFD+LSN  RKD
Sbjct:  156 PPRDKQPTDNWGDFNSGNAQGYLQSENPGGPNYDLINGDLVGLIDIAHQSNNQFIRHPVAAGNPQNIPSGTIWNQPNPANAARYPDRDLAPDTFTNPGTSRHPGAINFIRYPFNTADPMAGDAVADNATGLLMRWSQWMIQEIGVDGFRLDASKHAPTWFWDQYFDSAIHMTRTTPDGRKVNPFTFGENVTGNFDILSNLTRKD 359          
BLAST of mRNA_M-pyrifera_M_contig108201.1747.1 vs. uniprot
Match: A0A5M4D6M3_9CYAN (Aamy domain-containing protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D6M3_9CYAN)

HSP 1 Score: 311 bits (797), Expect = 1.970e-97
Identity = 139/204 (68.14%), Postives = 165/204 (80.88%), Query Frame = 1
Query:    1 PPRDKQPTDDWGDFHNGVASGYLQSENPGGSNYNLHDGDLVALVDIAQESVNNFIRQPVEEGDPQNILAGTIFNLPNDGNYRFYPDQTLSPDIFVNPGTSRNPGAQSFTRYPFNTASPMNGDPIADNATGLLMRWAQWMIQDVGVDGFRLDAHKHIPSWFWDGFFDSAVHMARTNPNGQKVNPFSFGENVTGNFDVLSNQIRKD 612
            PPRDK PTD+WGDFH G A+GYLQSENPGG+NYNL  GDLVAL+DIAQES + +IR PV  GDP NI  GT++NLP+ GN  FYPD  L+P    NPGTSRNPG  +FTRYPFN A P+ GD + DN TG LMRWAQWM++   +DGFRLDAHKHIP+WFWD +FD+AVHMAR +PNG +VNPF+FGENV+GNFD+L+N +R D
Sbjct:  146 PPRDKVPTDNWGDFHAGNANGYLQSENPGGANYNLTQGDLVALIDIAQESNHQYIRNPVTAGDPLNIPGGTLYNLPDAGNAAFYPDGDLAPMNVSNPGTSRNPGVTNFTRYPFNAAQPLAGDAVTDNTTGYLMRWAQWMLEARRIDGFRLDAHKHIPTWFWDTYFDAAVHMARLDPNGNRVNPFTFGENVSGNFDMLANYVRFD 349          
BLAST of mRNA_M-pyrifera_M_contig108201.1747.1 vs. uniprot
Match: A0A3M2BBG4_9BACT (Aamy domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BBG4_9BACT)

HSP 1 Score: 308 bits (789), Expect = 2.970e-96
Identity = 138/204 (67.65%), Postives = 165/204 (80.88%), Query Frame = 1
Query:    1 PPRDKQPTDDWGDFHNGVASGYLQSENPGGSNYNLHDGDLVALVDIAQESVNNFIRQPVEEGDPQNILAGTIFNLPNDGNYRFYPDQTLSPDIFVNPGTSRNPGAQSFTRYPFNTASPMNGDPIADNATGLLMRWAQWMIQDVGVDGFRLDAHKHIPSWFWDGFFDSAVHMARTNPNGQKVNPFSFGENVTGNFDVLSNQIRKD 612
            PPRDK PTDDWGDFH G ASGYLQSENPGG+NY+LH GDLV L+DIAQES   FIR PVE G+P NI AGT++NLP+  N   YPDQ L+P    NPGTSRNPG  S+ RYP+NT +P++GDP+A+N TG L+RWAQWM++   VDGFRLDAHKHIP+WFWD +FD+AVHMAR +PNG +  P++FGENVTGNFD+L N +R D
Sbjct:  149 PPRDKLPTDDWGDFHAGNASGYLQSENPGGANYDLHRGDLVGLIDIAQESNFQFIRHPVEPGNPLNIPAGTLYNLPDASNAALYPDQALTPIWIDNPGTSRNPGGLSYFRYPYNTTAPLSGDPVAENTTGYLIRWAQWMLEVQRVDGFRLDAHKHIPTWFWDTYFDAAVHMARIDPNGNRAIPYTFGENVTGNFDMLFNYVRLD 352          
BLAST of mRNA_M-pyrifera_M_contig108201.1747.1 vs. uniprot
Match: A0A7L9BRB1_9BACT (Aamy domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A7L9BRB1_9BACT)

HSP 1 Score: 273 bits (699), Expect = 4.290e-83
Identity = 130/204 (63.73%), Postives = 150/204 (73.53%), Query Frame = 1
Query:    1 PPRDKQPTDDWGDFHNGVASGYLQSENPGGSNYNLHDGDLVALVDIAQESVNNFIRQPVEEGDPQNILAGTIFNLPNDGNYRFYPDQTLSPDIFVNPGTSRNPGAQSFTRYPFNTASPMNGDPIADNATGLLMRWAQWMIQDVGVDGFRLDAHKHIPSWFWDGFFDSAVHMARTNPNGQKVNPFSFGENVTGNFDVLSNQIRKD 612
            PP DK PT +WGDFHNG+ASGY QSE+P G  Y+LH GDLVALVDIAQES + FIR PV EG+PQNI AGT++N P+  N+R YPD+ L P   VNPGT+R PG  +FT YPFN   PM GDP+ADNATGLLMRW QWM+    VDGFRLDA KH P WFWD F+DS VH  R  P+G++V  FSFGE V G     +N IRKD
Sbjct:  146 PPVDKLPTSNWGDFHNGIASGYFQSEDPNGPRYDLHRGDLVALVDIAQESNHVFIRHPVAEGNPQNIPAGTLWNRPDPINHRAYPDRDLPPMSVVNPGTARAPGVNNFTFYPFNPGEPMAGDPVADNATGLLMRWTQWMMDVHRVDGFRLDAIKHAPPWFWDTFYDSVVHNRRVLPDGRRVTAFSFGECVEGPSFTFNNYIRKD 349          
BLAST of mRNA_M-pyrifera_M_contig108201.1747.1 vs. uniprot
Match: A0A7D8YUM0_9BACT (Aamy domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7D8YUM0_9BACT)

HSP 1 Score: 250 bits (638), Expect = 3.370e-74
Identity = 114/193 (59.07%), Postives = 136/193 (70.47%), Query Frame = 1
Query:   31 WGDFHNGVASGYLQSENPGGSNYNLHDGDLVALVDIAQESVNNFIRQPVEEGDPQNILAGTIFNLPNDGNYRFYPDQTLSPDIFVNPGTSRNPGAQSFTRYPFNTASPMNGDPIADNATGLLMRWAQWMIQDVGVDGFRLDAHKHIPSWFWDGFFDSAVHMARTNPNGQKVNPFSFGENVTGNFDVLSNQIRK 609
            WGDFH GVA G+LQSENPGG  Y+   GDLVAL+DI Q S N F+RQPV+ GDP NI +GTI+N PN  N+RFYPD  L+    VNPGT RNPG      +PFN   PM GDPI +NATG L RW +WM++   VDGFRLDA KHIPSWFWD  +DS+V+M    P+GQ   PFSFGE+  GN +V  N +R+
Sbjct:  173 WGDFHAGVAGGFLQSENPGGPRYDTLRGDLVALIDIDQASNNFFVRQPVQAGDPDNIPSGTIYNRPNPANFRFYPDLDLAAQEIVNPGTFRNPGTFVSNFHPFNLGEPMQGDPITENATGYLERWTRWMLEVQKVDGFRLDAAKHIPSWFWDNIWDSSVYMRWERPDGQMATPFSFGESTAGNQEVFDNYVRR 365          
BLAST of mRNA_M-pyrifera_M_contig108201.1747.1 vs. uniprot
Match: A0A357KSV4_9BACT (EF-hand domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A357KSV4_9BACT)

HSP 1 Score: 238 bits (608), Expect = 6.040e-70
Identity = 122/205 (59.51%), Postives = 136/205 (66.34%), Query Frame = 1
Query:   28 DWGDFHNGVASGYLQSENPGGSN--YNLHDGDLVALVDIAQESVNNFIRQPVEEGDPQNILAGTIFNLPNDGNYRFYPDQTLSPDIFVNPGTSR--------NPGAQSFTRYPFNTASPMNGDPIADNATGLLMRWAQWMIQDVGVDGFRLDAHKHIPSWFWDGFFDSAVHMARTNPNGQKVNPFSFGENVTGNFDVLSNQIRKD 612
            DWGDFHNG      QS +P G    YNL +GDLV+L+DI Q S N FIR PV  G+PQNI AGTI N P+ GN RFYPD  L P +  NPG SR        N   Q FT YPFNTA PM GDPIADNATGLLMRW+QWMI + GVDGFRLDA KHI  WFWD F+DS ++  R  P+G  V PFSFGENV G   V    +RKD
Sbjct:  144 DWGDFHNGGT----QSHDPSGGAGPYNLFEGDLVSLIDINQSSNNQFIRHPVASGNPQNIPAGTIRNKPDPGNARFYPDTGLPPKVVNNPGISRSNMGLGAFNTAPQQFTIYPFNTADPMAGDPIADNATGLLMRWSQWMIDEFGVDGFRLDASKHIEPWFWDQFYDSFMYQRRRAPDGSFVTPFSFGENVEGPSLVSHYWVRKD 344          
BLAST of mRNA_M-pyrifera_M_contig108201.1747.1 vs. uniprot
Match: A0A651EPZ7_9BACT (Aamy domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A651EPZ7_9BACT)

HSP 1 Score: 237 bits (605), Expect = 1.340e-69
Identity = 123/223 (55.16%), Postives = 144/223 (64.57%), Query Frame = 1
Query:    1 PPRDKQPTDDWGDFHNGVASGYLQSENPGGSNYNLHDGDLVALVDIAQESVNNFIRQPVE----EG-------DPQNILAGTIFNLPNDGNYRFYPDQTLSPDIFVNPGTSR-NPGAQSFTR-------YPFNTASPMNGDPIADNATGLLMRWAQWMIQDVGVDGFRLDAHKHIPSWFWDGFFDSAVHMARTNPNGQKVNPFSFGENVTGNFDVLSNQIRKD 612
            P   K P  +WGDFH G ASGYLQSENPGG NY+L  GDLVALVDIAQES N  IRQPV+    EG        P+NI AGT+ N PN  N RFYPD +L+P    NPG  R N G  SF         YPFNTA PM GDP+ +NA  LL RW QWM+ + GVDGFR+DA KH+P WFWD ++D AVH     P+G    PF+FGE V GN ++L+  +RKD
Sbjct:  151 PVEQKNPLSNWGDFHGGNASGYLQSENPGGPNYDLFLGDLVALVDIAQESNNWMIRQPVDPNIPEGIQGSPNDPPRNIPAGTVRNQPNPENRRFYPDLSLTPKSVFNPGFFRPNLGLGSFNTPAETTLVYPFNTADPMQGDPVPENAAALLNRWTQWMLDEFGVDGFRMDAIKHVPPWFWDRYWDVAVHDRWVRPDGTTATPFTFGEAVQGNNEILNYWVRKD 373          
BLAST of mRNA_M-pyrifera_M_contig108201.1747.1 vs. uniprot
Match: UPI001AD5E356 (Alpha-amylase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001AD5E356)

HSP 1 Score: 236 bits (602), Expect = 4.800e-69
Identity = 117/217 (53.92%), Postives = 139/217 (64.06%), Query Frame = 1
Query:   13 KQPTDDWGDFHNGVASGYLQSENPGGSNYNLHDGDLVALVDIAQESVNNFIRQPVEEGDPQNILAGTIFNLPNDGNYRFYPDQTLSPDIFVNPGT------------------SRNPGAQSFTRYPFNTASPMNGDPIADNATGLLMRWAQWMIQDVGVDGFRLDAHKHIPSWFWDGFFDSAVHMARTNPNGQKVNPFSFGENVTGNFDVLSNQIRK 609
            KQPT +WGDFH G A GY QSENPGG+ Y L +GDL++L+DI Q SVNNFIRQP E G+PQNI  GTIFN  +  N RFYPDQ L  D   NPG                   +RN  A   T   FNTA PM+GDP+A+NATG L+RW QWM+    VDGFR+DA KH+PSWF+D FFD+ V   R  P+G+ V PFSF E+V GN       +RK
Sbjct:  156 KQPTHNWGDFHAGTAGGYYQSENPGGARYCLLNGDLLSLIDINQGSVNNFIRQPAEAGNPQNIPGGTIFNTVDPNNRRFYPDQALGTDTINNPGMWFAGPLNSGIFAPPCDVPARNEPATQLTLGRFNTADPMSGDPVAENATGYLLRWVQWMMDVHRVDGFRIDAAKHMPSWFFDTFFDTVVSGRRVTPDGRNVTPFSFVESVEGNDFTFDRYVRK 372          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108201.1747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9CCA5_9BACT6.470e-11680.00Aamy domain-containing protein n=3 Tax=Phycisphaer... [more]
A0A812XX26_9DINO1.270e-10573.53Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A3M2CE68_9BACT1.750e-10271.57Aamy domain-containing protein n=1 Tax=Planctomyce... [more]
A0A5M4D6M3_9CYAN1.970e-9768.14Aamy domain-containing protein n=1 Tax=Cyanobacter... [more]
A0A3M2BBG4_9BACT2.970e-9667.65Aamy domain-containing protein n=1 Tax=Planctomyce... [more]
A0A7L9BRB1_9BACT4.290e-8363.73Aamy domain-containing protein n=1 Tax=Phycisphaer... [more]
A0A7D8YUM0_9BACT3.370e-7459.07Aamy domain-containing protein n=1 Tax=Phycisphaer... [more]
A0A357KSV4_9BACT6.040e-7059.51EF-hand domain-containing protein n=1 Tax=Phycisph... [more]
A0A651EPZ7_9BACT1.340e-6955.16Aamy domain-containing protein n=1 Tax=Phycisphaer... [more]
UPI001AD5E3564.800e-6953.92Alpha-amylase n=1 Tax=Phycisphaerales bacterium Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108201contigM-pyrifera_M_contig108201:3..614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score146.7
Seed ortholog evalue1.1e-32
Seed eggNOG ortholog1142394.PSMK_18980
KEGG koko:K01176
KEGG ReactionR02108,R02112,R11262
KEGG Pathwayko00500,ko01100,ko04973,map00500,map01100,map04973
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hydrolase activity, hydrolyzing O-glycosyl compounds
EggNOG OGsCOG0366@1,COG0366@2
EC3.2.1.1
COG Functional cat.G
CAZyGH13
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size612
Cds size612
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.9827325-CDS-M-pyrifera_M_contig108201:2..6141622815591.9827325-CDS-M-pyrifera_M_contig108201:2..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108201 3..614 -
1692277478.1763976-CDS-M-pyrifera_M_contig108201:2..6141692277478.1763976-CDS-M-pyrifera_M_contig108201:2..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108201 3..614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108201.1747.1prot_M-pyrifera_M_contig108201.1747.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108201 3..614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108201.1747.1

>prot_M-pyrifera_M_contig108201.1747.1 ID=prot_M-pyrifera_M_contig108201.1747.1|Name=mRNA_M-pyrifera_M_contig108201.1747.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=204bp
PPRDKQPTDDWGDFHNGVASGYLQSENPGGSNYNLHDGDLVALVDIAQES
VNNFIRQPVEEGDPQNILAGTIFNLPNDGNYRFYPDQTLSPDIFVNPGTS
RNPGAQSFTRYPFNTASPMNGDPIADNATGLLMRWAQWMIQDVGVDGFRL
DAHKHIPSWFWDGFFDSAVHMARTNPNGQKVNPFSFGENVTGNFDVLSNQ
IRKD
back to top

mRNA from alignment at M-pyrifera_M_contig108201:3..614-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108201.1747.1 ID=mRNA_M-pyrifera_M_contig108201.1747.1|Name=mRNA_M-pyrifera_M_contig108201.1747.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig108201:3..614- (Macrocystis pyrifera P11B4 male)
CCGCCGCGTGATAAGCAGCCGACAGACGACTGGGGTGATTTCCACAACGG CGTCGCTTCGGGATATCTCCAATCCGAGAACCCAGGGGGATCGAACTACA ACTTGCATGACGGCGATCTTGTCGCGCTCGTCGATATCGCTCAGGAATCA GTCAACAACTTCATCCGGCAGCCTGTCGAAGAGGGGGATCCGCAGAACAT CCTTGCTGGGACGATCTTCAATCTCCCCAATGACGGCAACTATCGCTTCT ATCCTGATCAGACATTGTCGCCGGACATCTTTGTCAACCCAGGGACTTCA CGCAACCCTGGAGCGCAGTCGTTCACTCGCTATCCCTTCAACACCGCATC GCCGATGAACGGCGATCCAATCGCTGACAATGCGACAGGACTGCTGATGC GTTGGGCGCAGTGGATGATCCAAGATGTAGGAGTCGATGGGTTCCGTCTC GATGCGCACAAGCACATCCCCAGCTGGTTCTGGGACGGATTCTTCGACTC AGCTGTCCACATGGCGCGGACAAATCCGAACGGTCAGAAAGTCAACCCAT TCAGCTTCGGCGAAAACGTCACGGGGAACTTTGATGTCCTGAGCAATCAG ATCCGCAAGGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108201:3..614-

>mRNA_M-pyrifera_M_contig108201.1747.1 ID=mRNA_M-pyrifera_M_contig108201.1747.1|Name=mRNA_M-pyrifera_M_contig108201.1747.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1224bp|location=Sequence derived from alignment at M-pyrifera_M_contig108201:3..614- (Macrocystis pyrifera P11B4 male)
CCGCCGCGTGATAAGCAGCCGACAGACGACTGGGGTGATTTCCACAACGG
CGTCGCTTCGGGATATCTCCAATCCGAGAACCCAGGGGGATCGAACTACA
ACTTGCATGACGGCGATCTTGTCGCGCTCGTCGATATCGCTCAGGAATCA
GTCAACAACTTCATCCGGCAGCCTGTCGAAGAGGGGGATCCGCAGAACAT
CCTTGCTGGGACGATCTTCAATCTCCCCAATGACGGCAACTATCGCTTCT
ATCCTGATCAGACATTGTCGCCGGACATCTTTGTCAACCCAGGGACTTCA
CGCAACCCTGGAGCGCAGTCGTTCACTCGCTATCCCTTCAACACCGCATC
GCCGATGAACGGCGATCCAATCGCTGACAATGCGACAGGACTGCTGATGC
GTTGGGCGCAGTGGATGATCCAAGATGTAGGAGTCGATGGGTTCCGTCTC
GATGCGCACAAGCACATCCCCAGCTGGTTCTGGGACGGATTCTTCGACTC
AGCTGTCCACATGGCGCGGACAAATCCGAACGGTCAGAAAGTCAACCCAT
TCAGCTTCGGCGAAAACGTCACGGGGAACTTTGATGTCCTGAGCAATCAG
ATCCGCAAGGACCCGCCGCGTGATAAGCAGCCGACAGACGACTGGGGTGA
TTTCCACAACGGCGTCGCTTCGGGATATCTCCAATCCGAGAACCCAGGGG
GATCGAACTACAACTTGCATGACGGCGATCTTGTCGCGCTCGTCGATATC
GCTCAGGAATCAGTCAACAACTTCATCCGGCAGCCTGTCGAAGAGGGGGA
TCCGCAGAACATCCTTGCTGGGACGATCTTCAATCTCCCCAATGACGGCA
ACTATCGCTTCTATCCTGATCAGACATTGTCGCCGGACATCTTTGTCAAC
CCAGGGACTTCACGCAACCCTGGAGCGCAGTCGTTCACTCGCTATCCCTT
CAACACCGCATCGCCGATGAACGGCGATCCAATCGCTGACAATGCGACAG
GACTGCTGATGCGTTGGGCGCAGTGGATGATCCAAGATGTAGGAGTCGAT
GGGTTCCGTCTCGATGCGCACAAGCACATCCCCAGCTGGTTCTGGGACGG
ATTCTTCGACTCAGCTGTCCACATGGCGCGGACAAATCCGAACGGTCAGA
AAGTCAACCCATTCAGCTTCGGCGAAAACGTCACGGGGAACTTTGATGTC
CTGAGCAATCAGATCCGCAAGGAC
back to top