mRNA_M-pyrifera_M_contig108198.1745.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108198.1745.1
Unique NamemRNA_M-pyrifera_M_contig108198.1745.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108198.1745.1 vs. uniprot
Match: A0A7S2UYS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYS2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.070e-16
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:   46 ERGFVLEAAQEGLREDGRGSLESRRVRVRLERGEGRSVCEVQLGASRVAGVVSARVVPPFPDRPSEGFFHVNPELSAL 279
            E+  +L A +EG R DGRG LE R VRV   R E  S  EVQLG +RV   VS  +VPP+PDRPSEGF + N E+S +
Sbjct:    8 EKTLLLSALEEGKRMDGRGILEMRYVRVSFGRAECESTAEVQLGRTRVLCTVSGEIVPPYPDRPSEGFLNFNAEVSPM 85
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BLAST of mRNA_M-pyrifera_M_contig108198.1745.1 vs. uniprot
Match: A0A7S1CIZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIZ9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.740e-16
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   34 LSGVERGFVLEAAQEGLREDGRGSLESRRVRVRLERGEGRSVCEVQLGASRVAGVVSARVVPPFPDRPSEGFFHVNPELSAL 279
            LS VER F+  A + G R DGRG L+ RRV  + +R   R+  EV+LG +RV  V +A VVPP+PDRP+EGF   N ELS +
Sbjct:    3 LSNVERDFIHHALRSGRRVDGRGLLDRRRVAFKFDRTAARTTAEVRLGKTRVVTVTTAEVVPPYPDRPTEGFLMFNVELSPM 84
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BLAST of mRNA_M-pyrifera_M_contig108198.1745.1 vs. uniprot
Match: D7G4N5_ECTSI (3'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4N5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.320e-15
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:   13 AVAEGDGLSGVERGFVLEAAQEGLREDGRGSLESRRVRVRLERGEGRSVCEVQLGASRVAGVVSARVVPPFPDRPSEGFFHVNPELSAL 279
            A+ EG   S  +  F+L + + G R DGR   + R +R+   R EG++  E+QLG +RV GVV+  VVPPFPDRP+EGF H N EL  +
Sbjct:    2 AIREGPWQSKNDHDFILRSLRGGRRADGRQLGDMRLLRMVFARAEGQASAEIQLGRTRVLGVVTGEVVPPFPDRPTEGFLHFNVELGPM 90
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BLAST of mRNA_M-pyrifera_M_contig108198.1745.1 vs. uniprot
Match: A0A5A8EHD2_CAFRO (RNase_PH_C domain-containing protein n=7 Tax=Sar TaxID=2698737 RepID=A0A5A8EHD2_CAFRO)

HSP 1 Score: 79.0 bits (193), Expect = 3.910e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:   28 DGLSGVERGFVLEAAQEGLREDGRGSLESRRVRVRLERGEGRSVCEVQLGASRVAGVVSARVVPPFPDRPSEGFFHVNPELSAL 279
            D +S +E  F+L A  EG+REDGR  +E R    R ER  GR++ EV +G +R   V +A VV PFPDRP+EGF HV+ +LS +
Sbjct:    8 DVISTLETDFILRAVAEGVREDGRRLMERRPTTFRFERTAGRALAEVSVGQTRAIAVTTATVVSPFPDRPAEGFLHVDVDLSPM 91
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BLAST of mRNA_M-pyrifera_M_contig108198.1745.1 vs. uniprot
Match: A0A3M6VKF7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKF7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.050e-13
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   28 DGLSGVERGFVLEAAQEG--LREDGRGSLESRRVRVRLERGEGRSVCEVQLGASRVAGVVSARVVPPFPDRPSEGFFHVNPELSAL 279
            D LS  ER F+    ++   +R DGR  L+ R++RV+  R E  S  EVQLG +RV G V   +VPPFPDRP+EGF H + ELS +
Sbjct:    8 DFLSENERQFLANCLRQSPHVRADGRELLQQRKIRVQFRRSESESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHFSVELSPM 93
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BLAST of mRNA_M-pyrifera_M_contig108198.1745.1 vs. uniprot
Match: A0A6H5KDM4_9PHAE (RNase_PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.100e-13
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   13 AVAEGDGLSGVERGFVLEAAQEGLREDGRGSLESRRVRVRLERGEGRSVCEVQLGASRVAGVVSARVVPPFPDRPSEGFFHVNPELSAL 279
            A+ EG   S  +  F+L + + G R DGR   + R +R+   R EG++  E+QLG +RV GVV+  VVPPFPDRP EGF H N EL  +
Sbjct:    2 AIREGPWQSKNDYEFILRSLRGGRRVDGRELGDMRLLRMVFARAEGQASAEIQLGRTRVLGVVTGEVVPPFPDRPMEGFLHFNVELGPM 90
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BLAST of mRNA_M-pyrifera_M_contig108198.1745.1 vs. uniprot
Match: K3X4Z2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4Z2_GLOUD)

HSP 1 Score: 72.4 bits (176), Expect = 7.750e-13
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   22 EGDGLSGVERGFVLEAAQEG--LREDGRGSLESRRVRVRLERGEGRSVCEVQLGASRVAGVVSARVVPPFPDRPSEGFFHVNPELSAL 279
            E D LS  ER F+ ++  +   +R DGR  +  R++RV+  R E +S  EVQLG +RV   V   +VPPFPDRP+EGF H N ELS +
Sbjct:    6 EHDFLSENERKFLFDSIHDAPHVRADGRELMHQRKIRVQFRRTEEQSQAEVQLGRTRVIANVHGEIVPPFPDRPTEGFLHFNVELSPM 93
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BLAST of mRNA_M-pyrifera_M_contig108198.1745.1 vs. uniprot
Match: D0NT89_PHYIT (Exosome complex exonuclease RRP45-like protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NT89_PHYIT)

HSP 1 Score: 72.4 bits (176), Expect = 7.780e-13
Identity = 42/86 (48.84%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:   28 DGLSGVERGFVLEAAQEG--LREDGRGSLESRRVRVRLERGEGRSVCEVQLGASRVAGVVSARVVPPFPDRPSEGFFHVNPELSAL 279
            D LS  ER F+    +    LR DGR  L+ R++RV+  R E  S  EVQLG +RV G V   +VPPFPDRP+EGF H   ELS +
Sbjct:    8 DFLSENERQFLANCLRVSPHLRADGRDLLQQRKIRVQFRRSESESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHFAVELSPM 93
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BLAST of mRNA_M-pyrifera_M_contig108198.1745.1 vs. uniprot
Match: H3GYQ9_PHYRM (Kinesin motor domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GYQ9_PHYRM)

HSP 1 Score: 72.4 bits (176), Expect = 8.170e-13
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:   22 EGDGLSGVERGFVLEAAQEG--LREDGRGSLESRRVRVRLERGEGRSVCEVQLGASRVAGVVSARVVPPFPDRPSEGFFHVNPELSAL 279
            E D LS  ER F+    ++   +R DGR  L+ R++RV+  R E  S  EVQLG +RV G V   +VPPFPDRP+EGF H   ELS +
Sbjct:    6 EHDFLSENERQFLANCLRQPPHVRADGRELLQQRKIRVQFRRSESESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHFAVELSPM 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig108198.1745.1 vs. uniprot
Match: A0A2D4C8I4_PYTIN (Exosome complex exonuclease RRP45-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8I4_PYTIN)

HSP 1 Score: 72.0 bits (175), Expect = 1.060e-12
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   22 EGDGLSGVERGFVLEAAQEG--LREDGRGSLESRRVRVRLERGEGRSVCEVQLGASRVAGVVSARVVPPFPDRPSEGFFHVNPELSAL 279
            E D LS  ER F+  +  +   +R DGR  ++ R++RV+  R + +S  EVQ+G +RV   V   +VPPFPDRP+EGF H N ELS +
Sbjct:    6 EHDFLSENERAFLFHSIHDKPHIRPDGRELMQQRKIRVQFRRNDDQSQAEVQIGRTRVIANVHGEIVPPFPDRPTEGFLHFNVELSPM 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108198.1745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UYS2_9STRA1.070e-1653.85Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1CIZ9_9STRA5.740e-1651.22Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D7G4N5_ECTSI3.320e-1546.073'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocar... [more]
A0A5A8EHD2_CAFRO3.910e-1548.81RNase_PH_C domain-containing protein n=7 Tax=Sar T... [more]
A0A3M6VKF7_9STRA3.050e-1347.67Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A6H5KDM4_9PHAE3.100e-1346.07RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
K3X4Z2_GLOUD7.750e-1346.59Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0NT89_PHYIT7.780e-1348.84Exosome complex exonuclease RRP45-like protein n=2... [more]
H3GYQ9_PHYRM8.170e-1347.73Kinesin motor domain-containing protein n=2 Tax=Ph... [more]
A0A2D4C8I4_PYTIN1.060e-1244.32Exosome complex exonuclease RRP45-like protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108198contigM-pyrifera_M_contig108198:3..281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue3e-12
Seed eggNOG ortholog2880.D7G4N5
KEGG koko:K03678,ko:K10397,ko:K12589
KEGG Pathwayko03018,map03018
KEGG ModuleM00390,M00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354
EggNOG free text desc.U1 snRNA 3'-end processing
EggNOG OGsCOG2123@1,KOG1614@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04812
Exons1
Model size279
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.9094846-CDS-M-pyrifera_M_contig108198:2..2811622815591.9094846-CDS-M-pyrifera_M_contig108198:2..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108198 3..281 -
1692277478.1491776-CDS-M-pyrifera_M_contig108198:2..2811692277478.1491776-CDS-M-pyrifera_M_contig108198:2..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108198 3..281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108198.1745.1prot_M-pyrifera_M_contig108198.1745.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108198 3..281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108198.1745.1

>prot_M-pyrifera_M_contig108198.1745.1 ID=prot_M-pyrifera_M_contig108198.1745.1|Name=mRNA_M-pyrifera_M_contig108198.1745.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
MALPAVAEGDGLSGVERGFVLEAAQEGLREDGRGSLESRRVRVRLERGEG
RSVCEVQLGASRVAGVVSARVVPPFPDRPSEGFFHVNPELSAL
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mRNA from alignment at M-pyrifera_M_contig108198:3..281-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108198.1745.1 ID=mRNA_M-pyrifera_M_contig108198.1745.1|Name=mRNA_M-pyrifera_M_contig108198.1745.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig108198:3..281- (Macrocystis pyrifera P11B4 male)
ATGGCTCTCCCTGCGGTGGCGGAGGGTGACGGTTTGAGCGGCGTGGAGCG
TGGTTTTGTGCTGGAGGCTGCGCAGGAGGGTCTTCGGGAGGACGGGCGAG
GGAGTTTGGAGAGCCGTCGCGTGCGTGTGCGTCTGGAGCGCGGGGAGGGC
CGGTCTGTGTGCGAGGTGCAGCTGGGTGCGAGTCGAGTGGCGGGGGTGGT
GAGTGCGAGGGTGGTGCCCCCGTTTCCCGACCGCCCGTCGGAGGGATTTT
TCCACGTCAACCCGGAGTTGTCTGCGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108198:3..281-

>mRNA_M-pyrifera_M_contig108198.1745.1 ID=mRNA_M-pyrifera_M_contig108198.1745.1|Name=mRNA_M-pyrifera_M_contig108198.1745.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig108198:3..281- (Macrocystis pyrifera P11B4 male)
ATGGCTCTCCCTGCGGTGGCGGAGGGTGACGGTTTGAGCGGCGTGGAGCG
TGGTTTTGTGCTGGAGGCTGCGCAGGAGGGTCTTCGGGAGGACGGGCGAG
GGAGTTTGGAGAGCCGTCGCGTGCGTGTGCGTCTGGAGCGCGGGGAGGGC
CGGTCTGTGTGCGAGGTGCAGCTGGGTGCGAGTCGAGTGGCGGGGGTGGT
GAGTGCGAGGGTGGTGCCCCCGTTTCCCGACCGCCCGTCGGAGGGATTTT
TCCACGTCAACCCGGAGTTGTCTGCGCTGATGGCTCTCCCTGCGGTGGCG
GAGGGTGACGGTTTGAGCGGCGTGGAGCGTGGTTTTGTGCTGGAGGCTGC
GCAGGAGGGTCTTCGGGAGGACGGGCGAGGGAGTTTGGAGAGCCGTCGCG
TGCGTGTGCGTCTGGAGCGCGGGGAGGGCCGGTCTGTGTGCGAGGTGCAG
CTGGGTGCGAGTCGAGTGGCGGGGGTGGTGAGTGCGAGGGTGGTGCCCCC
GTTTCCCGACCGCCCGTCGGAGGGATTTTTCCACGTCAACCCGGAGTTGT
CTGCGCTG
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