mRNA_M-pyrifera_M_contig108195.1744.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108195.1744.1
Unique NamemRNA_M-pyrifera_M_contig108195.1744.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108195.1744.1 vs. uniprot
Match: A0A7C1KIW8_9BACT (Uncharacterized protein n=2 Tax=Gemmataceae TaxID=1914233 RepID=A0A7C1KIW8_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 8.140e-5
Identity = 21/54 (38.89%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:  154 MRKWAMLGLAMLCLLPQMLIEFFYAPPFDVTAYASNIDYEFASDEYAFDFAAEN 315
            +++W ++G+ ++ L+P  L E F+ PPFD+T  +  +DYEF   + A +FAA N
Sbjct:   20 LKRWLVIGIVLVFLMPLALWETFFPPPFDITVCSDTVDYEFRDPDCAVEFAALN 73
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108195.1744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C1KIW8_9BACT8.140e-538.89Uncharacterized protein n=2 Tax=Gemmataceae TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108195contigM-pyrifera_M_contig108195:273..614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.8743904-CDS-M-pyrifera_M_contig108195:272..6141622815591.8743904-CDS-M-pyrifera_M_contig108195:272..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108195 273..614 -
1692277478.1391463-CDS-M-pyrifera_M_contig108195:272..6141692277478.1391463-CDS-M-pyrifera_M_contig108195:272..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108195 273..614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108195.1744.1prot_M-pyrifera_M_contig108195.1744.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108195 273..614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108195.1744.1

>prot_M-pyrifera_M_contig108195.1744.1 ID=prot_M-pyrifera_M_contig108195.1744.1|Name=mRNA_M-pyrifera_M_contig108195.1744.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
GRPVVVRVPTCRGCGWRLKWSRLLSFLFTMATVLVAFFLIWPYLDDFVPR
VMRKWAMLGLAMLCLLPQMLIEFFYAPPFDVTAYASNIDYEFASDEYAFD
FAAENRDAAWVKIE
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mRNA from alignment at M-pyrifera_M_contig108195:273..614-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108195.1744.1 ID=mRNA_M-pyrifera_M_contig108195.1744.1|Name=mRNA_M-pyrifera_M_contig108195.1744.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig108195:273..614- (Macrocystis pyrifera P11B4 male)
GGTCGTCCGGTTGTCGTGCGAGTGCCGACGTGTCGTGGTTGCGGATGGCG
GCTGAAATGGTCGCGGCTGCTGAGTTTCCTGTTCACAATGGCGACCGTAT
TGGTGGCCTTTTTTCTGATCTGGCCGTACCTCGACGACTTCGTCCCACGA
GTGATGCGGAAGTGGGCCATGTTAGGGCTGGCCATGCTGTGTTTGCTGCC
ACAGATGTTGATCGAGTTCTTCTACGCCCCACCTTTCGACGTGACTGCGT
ATGCAAGCAACATCGACTACGAGTTCGCCTCCGACGAGTACGCATTCGAC
TTCGCAGCAGAAAATCGCGACGCCGCATGGGTGAAGATCGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108195:273..614-

>mRNA_M-pyrifera_M_contig108195.1744.1 ID=mRNA_M-pyrifera_M_contig108195.1744.1|Name=mRNA_M-pyrifera_M_contig108195.1744.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig108195:273..614- (Macrocystis pyrifera P11B4 male)
GGTCGTCCGGTTGTCGTGCGAGTGCCGACGTGTCGTGGTTGCGGATGGCG
GCTGAAATGGTCGCGGCTGCTGAGTTTCCTGTTCACAATGGCGACCGTAT
TGGTGGCCTTTTTTCTGATCTGGCCGTACCTCGACGACTTCGTCCCACGA
GTGATGCGGAAGTGGGCCATGTTAGGGCTGGCCATGCTGTGTTTGCTGCC
ACAGATGTTGATCGAGTTCTTCTACGCCCCACCTTTCGACGTGACTGCGT
ATGCAAGCAACATCGACTACGAGTTCGCCTCCGACGAGTACGCATTCGAC
TTCGCAGCAGAAAATCGCGACGCCGCATGGGTGAAGATCGAAGGTCGTCC
GGTTGTCGTGCGAGTGCCGACGTGTCGTGGTTGCGGATGGCGGCTGAAAT
GGTCGCGGCTGCTGAGTTTCCTGTTCACAATGGCGACCGTATTGGTGGCC
TTTTTTCTGATCTGGCCGTACCTCGACGACTTCGTCCCACGAGTGATGCG
GAAGTGGGCCATGTTAGGGCTGGCCATGCTGTGTTTGCTGCCACAGATGT
TGATCGAGTTCTTCTACGCCCCACCTTTCGACGTGACTGCGTATGCAAGC
AACATCGACTACGAGTTCGCCTCCGACGAGTACGCATTCGACTTCGCAGC
AGAAAATCGCGACGCCGCATGGGTGAAGATCGAA
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