mRNA_M-pyrifera_M_contig108157.1735.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108157.1735.1
Unique NamemRNA_M-pyrifera_M_contig108157.1735.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108157.1735.1 vs. uniprot
Match: UPI0018C387EB (aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Planomonospora sp. ID67723 TaxID=2738134 RepID=UPI0018C387EB)

HSP 1 Score: 69.7 bits (169), Expect = 2.770e-12
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 IPGVEVPLCPQLSVLVFRFIGTAKRCEEVANETNHQLLELINEKGTVHLSGVTLFSGAFYLRICILNFRT 210
            +PG+EVP  P+LS++ FR++ ++      A+E N  LLE INE G +HLS  T+  G+F+LRIC+L+FRT
Sbjct:  383 VPGLEVPWSPKLSIVAFRYVPSSGD----ADEANRLLLEKINESGRIHLSS-TMIRGSFFLRICVLSFRT 447          
BLAST of mRNA_M-pyrifera_M_contig108157.1735.1 vs. uniprot
Match: A0A8J3T4B0_9ACTN (L-2,4-diaminobutyrate decarboxylase n=2 Tax=Planobispora TaxID=29298 RepID=A0A8J3T4B0_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 1.810e-11
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 IPGVEVPLCPQLSVLVFRFIGTAKRCEEVANETNHQLLELINEKGTVHLSGVTLFSGAFYLRICILNFRT 210
            +PG+EVP  P+LS++ FR++  +      A+  N  LLE INE G +HLS  T+  G+F+LRIC+L+FRT
Sbjct:  383 VPGIEVPWSPKLSIVAFRYVPPSGD----ADAANQVLLEKINESGRIHLSS-TMIRGSFFLRICVLSFRT 447          
BLAST of mRNA_M-pyrifera_M_contig108157.1735.1 vs. uniprot
Match: UPI0016038359 (tyrosine decarboxylase 2-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016038359)

HSP 1 Score: 64.7 bits (156), Expect = 4.450e-11
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 IPGVEVPLCPQLSVLVFRFIGTAKRCEEVANETNHQLLELINEKGTVHLSGVTLFSGAFYLRICILNFRT 210
            IPGVEV   P+LSV+VFR+ G     EE  N  N QLL+ +   G V+LS  TL  G FYLRIC+L FRT
Sbjct:  104 IPGVEVLQEPELSVVVFRYTGAPGGLEE-NNRLNRQLLQEMIRDGGVYLSSTTL-KGTFYLRICVLGFRT 171          
BLAST of mRNA_M-pyrifera_M_contig108157.1735.1 vs. uniprot
Match: C3ZZ27_BRAFL (Uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZZ27_BRAFL)

HSP 1 Score: 64.7 bits (156), Expect = 1.620e-10
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 IPGVEVPLCPQLSVLVFRFIGTAKRCEEVANETNHQLLELINEKGTVHLSGVTLFSGAFYLRICILNFRT 210
            IPGVEV   P+LSV+VFR+ G     EE  N  N QLL+ +   G V+LS  TL  G FYLRIC+L FRT
Sbjct:  387 IPGVEVLQEPELSVVVFRYTGAPGGLEE-NNRLNRQLLQEMIRDGGVYLSSTTL-KGTFYLRICVLGFRT 454          
BLAST of mRNA_M-pyrifera_M_contig108157.1735.1 vs. uniprot
Match: A0A524HLE9_9BACT (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A524HLE9_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 9.390e-9
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 IPGVEVPLCPQLSVLVFRFIGTAKRCEEVANETNHQLLELINEKGTVHLSGVTLFSGAFYLRICILNFRT 210
            I  +E+   PQLS++ F  + +A    + AN  N +LL+ IN KG VHL+G TL  G F +RIC+L+FRT
Sbjct:  372 IEALEIVAEPQLSIVAFT-LRSAGHAPDEANRRNRELLDRINAKGRVHLTG-TLLDGRFVIRICVLSFRT 439          
BLAST of mRNA_M-pyrifera_M_contig108157.1735.1 vs. uniprot
Match: A0A3M9MBJ2_9BACT (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Rufibacter latericius TaxID=2487040 RepID=A0A3M9MBJ2_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.760e-8
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 IPGVEVPLCPQLSVLVFRFIGTAKRCEEVANETNHQLLELINEKGTVHLSGVTLFSGAFYLRICILNFRT 210
            +PG EVP+ P+LSV++FR++  A      ANE N +L++ + + G V LS  TL  G F LR+ IL+FRT
Sbjct:  387 LPGFEVPVVPELSVVIFRYVPKAGI---EANEFNQKLIKAVQQDGRVFLSS-TLLDGNFMLRLAILSFRT 452          
BLAST of mRNA_M-pyrifera_M_contig108157.1735.1 vs. uniprot
Match: C3ZXC6_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZXC6_BRAFL)

HSP 1 Score: 58.5 bits (140), Expect = 2.420e-8
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 IPGVEVPLCPQLSVLVFRFIGTAKRCEEVANETNHQLLELINEKGTVHLSGVTLFSGAFYLRICILNFRT 210
            IPG+EV   P+LSV+ FR+ G     EE  N  N  +L+ +   G V+LS  TL  G FYLR+C+L FRT
Sbjct:  452 IPGIEVLQEPELSVVAFRYTGAPGGLEE-NNRLNRLVLQEMVRDGGVYLSSTTL-KGTFYLRVCVLGFRT 519          
BLAST of mRNA_M-pyrifera_M_contig108157.1735.1 vs. uniprot
Match: UPI00164578C2 (Aminotransferase class V-fold PLP-dependent enzyme n=2 Tax=Rufibacter sediminis TaxID=2762756 RepID=UPI00164578C2)

HSP 1 Score: 58.2 bits (139), Expect = 3.290e-8
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    7 GVEVPLCPQLSVLVFRFIGTAKRCEEVANETNHQLLELINEKGTVHLSGVTLFSGAFYLRICILNFRT 210
            GVEVP+ P+LS+++FRF+ T     E AN  N +L++ + + G V LS  TL  G F LR+ IL+FRT
Sbjct:  398 GVEVPVEPELSLVIFRFVPTTG---EEANAFNQKLIKAVQQDGRVFLSS-TLLDGNFMLRLAILSFRT 461          
BLAST of mRNA_M-pyrifera_M_contig108157.1735.1 vs. uniprot
Match: UPI0015E73295 (aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Rufibacter sp. XAAS-G3-1 TaxID=2729134 RepID=UPI0015E73295)

HSP 1 Score: 57.8 bits (138), Expect = 4.490e-8
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    4 PGVEVPLCPQLSVLVFRFIGTAKRCEEVANETNHQLLELINEKGTVHLSGVTLFSGAFYLRICILNFRT 210
            PG EVP+ P+LSV++FR++       E AN  N +L++ + + G V LS  TL  G F LR+ IL+FRT
Sbjct:  388 PGFEVPVVPELSVVIFRYVPPPP---EEANTFNQKLIKAVQQDGRVFLSS-TLLDGNFMLRLAILSFRT 452          
BLAST of mRNA_M-pyrifera_M_contig108157.1735.1 vs. uniprot
Match: A0A6P4Y485_BRABE (tyrosine decarboxylase 2-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y485_BRABE)

HSP 1 Score: 57.8 bits (138), Expect = 4.510e-8
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 IPGVEVPLCPQLSVLVFRFIGTAKRCEEVANETNHQLLELINEKGTVHLSGVTLFSGAFYLRICILNFRT 210
            +PG EV   P+LSV+ FR+       +  AN  N  LLE + ++G V+LS  TL  G FYLRIC+L FRT
Sbjct:  431 VPGFEVLQAPELSVVAFRYTEPPSGMD--ANSFNKLLLEEMIQEGGVYLSSTTL-KGTFYLRICVLGFRT 497          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108157.1735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
UPI0018C387EB2.770e-1248.57aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A8J3T4B0_9ACTN1.810e-1147.14L-2,4-diaminobutyrate decarboxylase n=2 Tax=Planob... [more]
UPI00160383594.450e-1154.29tyrosine decarboxylase 2-like n=1 Tax=Branchiostom... [more]
C3ZZ27_BRAFL1.620e-1054.29Uncharacterized protein (Fragment) n=1 Tax=Branchi... [more]
A0A524HLE9_9BACT9.390e-945.71Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A3M9MBJ2_9BACT1.760e-845.71Aminotransferase class V-fold PLP-dependent enzyme... [more]
C3ZXC6_BRAFL2.420e-847.14Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
UPI00164578C23.290e-847.06Aminotransferase class V-fold PLP-dependent enzyme... [more]
UPI0015E732954.490e-844.93aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A6P4Y485_BRABE4.510e-847.14tyrosine decarboxylase 2-like n=1 Tax=Branchiostom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108157contigM-pyrifera_M_contig108157:400..609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score64.3
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog7739.XP_002586218.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tyrosine decarboxylase
EggNOG OGs3A36P@33154,3BY9M@33208,3DF83@33213,COG0076@1,KOG0628@2759
COG Functional cat.E
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.500341-CDS-M-pyrifera_M_contig108157:399..6091622815591.500341-CDS-M-pyrifera_M_contig108157:399..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108157 400..609 -
1692277477.986151-CDS-M-pyrifera_M_contig108157:399..6091692277477.986151-CDS-M-pyrifera_M_contig108157:399..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108157 400..609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108157.1735.1prot_M-pyrifera_M_contig108157.1735.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108157 400..609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108157.1735.1

>prot_M-pyrifera_M_contig108157.1735.1 ID=prot_M-pyrifera_M_contig108157.1735.1|Name=mRNA_M-pyrifera_M_contig108157.1735.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
IPGVEVPLCPQLSVLVFRFIGTAKRCEEVANETNHQLLELINEKGTVHLS
GVTLFSGAFYLRICILNFRT
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mRNA from alignment at M-pyrifera_M_contig108157:400..609-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108157.1735.1 ID=mRNA_M-pyrifera_M_contig108157.1735.1|Name=mRNA_M-pyrifera_M_contig108157.1735.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig108157:400..609- (Macrocystis pyrifera P11B4 male)
ATCCCTGGCGTGGAGGTCCCCCTCTGCCCTCAGCTCTCTGTCCTTGTGTT CCGATTCATTGGCACGGCGAAGAGGTGCGAGGAAGTGGCGAACGAGACCA ACCACCAGCTCTTGGAGCTCATCAACGAGAAGGGAACCGTTCATCTGAGC GGTGTCACGCTCTTCTCGGGCGCTTTCTACCTTCGCATTTGCATTTTGAA CTTCCGCACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108157:400..609-

>mRNA_M-pyrifera_M_contig108157.1735.1 ID=mRNA_M-pyrifera_M_contig108157.1735.1|Name=mRNA_M-pyrifera_M_contig108157.1735.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig108157:400..609- (Macrocystis pyrifera P11B4 male)
ATCCCTGGCGTGGAGGTCCCCCTCTGCCCTCAGCTCTCTGTCCTTGTGTT
CCGATTCATTGGCACGGCGAAGAGGTGCGAGGAAGTGGCGAACGAGACCA
ACCACCAGCTCTTGGAGCTCATCAACGAGAAGGGAACCGTTCATCTGAGC
GGTGTCACGCTCTTCTCGGGCGCTTTCTACCTTCGCATTTGCATTTTGAA
CTTCCGCACTATCCCTGGCGTGGAGGTCCCCCTCTGCCCTCAGCTCTCTG
TCCTTGTGTTCCGATTCATTGGCACGGCGAAGAGGTGCGAGGAAGTGGCG
AACGAGACCAACCACCAGCTCTTGGAGCTCATCAACGAGAAGGGAACCGT
TCATCTGAGCGGTGTCACGCTCTTCTCGGGCGCTTTCTACCTTCGCATTT
GCATTTTGAACTTCCGCACT
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