mRNA_M-pyrifera_M_contig108154.1734.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108154.1734.1
Unique NamemRNA_M-pyrifera_M_contig108154.1734.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108154.1734.1 vs. uniprot
Match: A0A7S4MNH4_9EUKA (Ras-related protein Rab n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MNH4_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 1.560e-26
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 VLTRRQCDLA-KEGICEDKRQMDKFCEEHGFIGWFETSAKDDLGIEDASKHLVGKILENDTTRGSNAPKKPSGVSLDA---RPAPQ-QKDSGCC 267
            VL   +CDLA KEGIC+D+RQMDKFCEE+GFIGWFETSAK  +GIEDA+K LVGKILE D+     A  KP  + +     +P P+ Q D GCC
Sbjct:  138 VLLANKCDLAGKEGICQDRRQMDKFCEENGFIGWFETSAKSSVGIEDAAKCLVGKILE-DSKASQPAKDKPDSIKITKDSNKPPPRPQDDGGCC 230          
BLAST of mRNA_M-pyrifera_M_contig108154.1734.1 vs. uniprot
Match: L8HAC7_ACACA (Ras-related protein Rab n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HAC7_ACACA)

HSP 1 Score: 90.9 bits (224), Expect = 1.180e-20
Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 VLTRRQCDLAKEGICEDKRQMDKFCEEHGFIGWFETSAKDDLGIEDASKHLVGKILENDTTRGSNAPKKPSGVSLDARPAPQQKDSG---CC 267
            VL   +CDLAKEG   +  QMDK+CEEHGF GW ETSAK+++ I+ A K LV KILEND  R +   KK   +       P+ K +G   CC
Sbjct:  128 VLLANKCDLAKEGFARNAAQMDKYCEEHGFAGWEETSAKENINIDKAVKFLVSKILENDINRQNQLQKKDENIVKVGAGGPEPKKAGAGGCC 219          
BLAST of mRNA_M-pyrifera_M_contig108154.1734.1 vs. uniprot
Match: A0A0D2U9Q8_CAPO3 (Ras-related protein Rab n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U9Q8_CAPO3)

HSP 1 Score: 89.0 bits (219), Expect = 4.910e-20
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 VLTRRQCDLAKEGICEDKRQMDKFCEEHGFIGWFETSAKDDLGIEDASKHLVGKILENDTTRGSNAPKKPSGVSLDARPAPQQK-DSGCC 267
            VL   +CDLAKEG+ ++  QMDKFCE+ GF GWFETSAK++L I+ A + LV KILEN T     AP++ +G+     P P+Q+   GCC
Sbjct:  119 VLLANKCDLAKEGLVKNSAQMDKFCEDKGFAGWFETSAKENLNIDKACRFLVTKILEN-TQSNQPAPEE-NGIIRPGGPEPKQEAKGGCC 206          
BLAST of mRNA_M-pyrifera_M_contig108154.1734.1 vs. uniprot
Match: A0A058Z1V3_FONAL (Ras-related protein Rab n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z1V3_FONAL)

HSP 1 Score: 89.0 bits (219), Expect = 5.680e-20
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 VLTRRQCDLAKEGICEDKRQMDKFCEEHGFIGWFETSAKDDLGIEDASKHLVGKILENDTTRGSNAPKKPSGVSLDARPAPQQKDSGCC 267
            VL   +CDL+K+G+  +  QMDK+CEE GFIGWFETSAK+++ I+ A + LV KILEND +      K  + V +D + +P +  SGCC
Sbjct:  128 VLLANKCDLSKDGLVRNAAQMDKYCEEKGFIGWFETSAKENVNIDKACRALVAKILENDVSNNKRDAK--ATVVVDVKESPAES-SGCC 213          
BLAST of mRNA_M-pyrifera_M_contig108154.1734.1 vs. uniprot
Match: A0A7M5VHE7_9CNID (Ras-related protein Rab n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5VHE7_9CNID)

HSP 1 Score: 87.0 bits (214), Expect = 3.160e-19
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 VLTRRQCDLAKEGICEDKRQMDKFCEEHGFIGWFETSAKDDLGIEDASKHLVGKILENDTTRGSNAPKKPSGVSLDARPAP-----QQKDSGCC 267
            +L   +CD  KEG+      MDKFCEE GFIGW+ETSAK+++ I++ASK LV KILEND      +P       +D R  P     QQ+ SGCC
Sbjct:  121 LLLANKCDQPKEGLVNKPSDMDKFCEEKGFIGWYETSAKENINIDEASKFLVQKILENDRANNLTSPDIDDD-KIDLRKKPVDVVTQQERSGCC 213          
BLAST of mRNA_M-pyrifera_M_contig108154.1734.1 vs. uniprot
Match: A0A2G8KTW1_STIJA (Ras-related protein Rab n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KTW1_STIJA)

HSP 1 Score: 85.1 bits (209), Expect = 8.680e-19
Identity = 38/90 (42.22%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 VLTRRQCDLAKEGICEDKRQMDKFCEEHGFIGWFETSAKDDLGIEDASKHLVGKILENDTTRGSNAPKK-PSGVSLDARPAPQQKDSGCC 267
            VL   +CD +KEG+  +  QMD++C + GFIGW+ETSAK+++ I++AS+ LV  ILEND   G N  ++ P  ++LD+  + + +  G C
Sbjct:   90 VLLANKCDQSKEGLVNNSSQMDEYCRDKGFIGWYETSAKENINIDEASRFLVSSILENDKAAGHNEREQDPDRLALDSTESSEGRGKGSC 179          
BLAST of mRNA_M-pyrifera_M_contig108154.1734.1 vs. uniprot
Match: UPI000A2A888B (ras-related protein Rab-38 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A888B)

HSP 1 Score: 85.1 bits (209), Expect = 2.380e-18
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 VLTRRQCDLAKEGICEDKRQMDKFCEEHGFIGWFETSAKDDLGIEDASKHLVGKILENDTTRG-SNAPKKPSGVSL 225
            VL   +CD  KEG+  + +QMD++C++ GFIGWFETSAK+D+ + DA+  LV KILEN+ T      PK P  ++L
Sbjct:  125 VLLANKCDQTKEGLVNNSKQMDEYCQDKGFIGWFETSAKEDINVADAANFLVSKILENEKTHNFEGIPKDPEAITL 200          
BLAST of mRNA_M-pyrifera_M_contig108154.1734.1 vs. uniprot
Match: A0A1X7UBZ8_AMPQE (Ras-related protein Rab n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UBZ8_AMPQE)

HSP 1 Score: 83.6 bits (205), Expect = 6.480e-18
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 VLTRRQCDLAKEGICEDKRQMDKFCEEHGFIGWFETSAKDDLGIEDASKHLVGKILENDTTRGSNAPKKPSGVSLDARPAPQQKDSGCC 267
            VL   +CDLA EG   +  Q+D +C+E GF GWFETSAK+++GI++A++ LV KILEND +    AP K     L      ++K  GCC
Sbjct:  125 VLLANKCDLASEGFLGNVGQLDDYCKEKGFAGWFETSAKENIGIDEAARCLVAKILENDESIEQQAPDKDV---LHVEQETKKKSGGCC 210          
BLAST of mRNA_M-pyrifera_M_contig108154.1734.1 vs. uniprot
Match: A0A814A6W7_9BILA (Ras-related protein Rab n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814A6W7_9BILA)

HSP 1 Score: 83.6 bits (205), Expect = 7.140e-18
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 VLTRRQCDLAKEGICEDKRQMDKFCEEHGFIGWFETSAKDDLGIEDASKHLVGKILENDTTRGSNAPKKPSGVSLDARPAPQQKDSGCC 267
            VL   +CDLAKE +  +  QM++FC++ GF+GWFETSAKDD+ +E ASK L+ KILE +     +  K+ S          Q+    CC
Sbjct:  127 VLLANKCDLAKENLANNNEQMNEFCQDKGFVGWFETSAKDDINVEKASKFLISKILEKENAIRKDEEKQASDKLTLTNENKQENKKRCC 215          
BLAST of mRNA_M-pyrifera_M_contig108154.1734.1 vs. uniprot
Match: UPI001E1E1CCA (ras-related protein Rab-32-like isoform X1 n=3 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E1CCA)

HSP 1 Score: 83.2 bits (204), Expect = 1.080e-17
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 VLTRRQCDLAKEGICEDKRQMDKFCEEHGFIGWFETSAKDDLGIEDASKHLVGKILENDTTRGSNAPKKPSGVSLDARPAPQQKDS-GCC 267
            VL   +CD  KEG+  +  Q+D+FC+E GFIGWFETSAK+++ I++A++ LV ++L+ND    S   K+   + LD      +K+  GCC
Sbjct:  129 VLLANKCDQPKEGLMNNTSQIDEFCKEKGFIGWFETSAKENINIDEAARFLVTQVLQNDKAMKSEDSKERDRIQLDDTDGSDKKEKRGCC 218          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108154.1734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MNH4_9EUKA1.560e-2659.57Ras-related protein Rab n=1 Tax=Vannella sp. CB-20... [more]
L8HAC7_ACACA1.180e-2048.91Ras-related protein Rab n=1 Tax=Acanthamoeba caste... [more]
A0A0D2U9Q8_CAPO34.910e-2051.11Ras-related protein Rab n=1 Tax=Capsaspora owczarz... [more]
A0A058Z1V3_FONAL5.680e-2048.31Ras-related protein Rab n=1 Tax=Fonticula alba Tax... [more]
A0A7M5VHE7_9CNID3.160e-1947.87Ras-related protein Rab n=1 Tax=Clytia hemisphaeri... [more]
A0A2G8KTW1_STIJA8.680e-1942.22Ras-related protein Rab n=1 Tax=Stichopus japonicu... [more]
UPI000A2A888B2.380e-1848.68ras-related protein Rab-38 n=1 Tax=Exaiptasia diap... [more]
A0A1X7UBZ8_AMPQE6.480e-1846.07Ras-related protein Rab n=1 Tax=Amphimedon queensl... [more]
A0A814A6W7_9BILA7.140e-1842.70Ras-related protein Rab n=1 Tax=Brachionus calycif... [more]
UPI001E1E1CCA1.080e-1742.22ras-related protein Rab-32-like isoform X1 n=3 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108154contigM-pyrifera_M_contig108154:43..312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score90.9
Seed ortholog evalue3.3e-16
Seed eggNOG ortholog192875.XP_004363733.1
KEGG koko:K07918
Hectar predicted targeting categoryother localisation
EggNOG free text desc.member RAS oncogene family
EggNOG OGs38BWT@33154,KOG4423@1,KOG4423@2759
COG Functional cat.U
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.4480298-CDS-M-pyrifera_M_contig108154:42..3121622815591.4480298-CDS-M-pyrifera_M_contig108154:42..312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108154 43..312 +
1692277477.9742017-CDS-M-pyrifera_M_contig108154:42..3121692277477.9742017-CDS-M-pyrifera_M_contig108154:42..312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108154 43..312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108154.1734.1prot_M-pyrifera_M_contig108154.1734.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108154 43..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108154.1734.1

>prot_M-pyrifera_M_contig108154.1734.1 ID=prot_M-pyrifera_M_contig108154.1734.1|Name=mRNA_M-pyrifera_M_contig108154.1734.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
VLTRRQCDLAKEGICEDKRQMDKFCEEHGFIGWFETSAKDDLGIEDASKH
LVGKILENDTTRGSNAPKKPSGVSLDARPAPQQKDSGCC*
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mRNA from alignment at M-pyrifera_M_contig108154:43..312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108154.1734.1 ID=mRNA_M-pyrifera_M_contig108154.1734.1|Name=mRNA_M-pyrifera_M_contig108154.1734.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig108154:43..312+ (Macrocystis pyrifera P11B4 male)
GTGCTGACGCGGCGGCAGTGCGACCTGGCGAAGGAGGGCATCTGCGAGGA TAAGAGGCAGATGGACAAGTTCTGCGAGGAGCACGGGTTTATCGGTTGGT TCGAGACCTCCGCCAAGGATGACTTGGGCATCGAAGACGCCTCGAAGCAT CTGGTGGGAAAGATCCTCGAGAACGACACGACGCGCGGCAGCAACGCCCC CAAGAAGCCCTCGGGCGTCAGCCTCGACGCACGTCCTGCGCCGCAGCAGA AGGACAGTGGCTGCTGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108154:43..312+

>mRNA_M-pyrifera_M_contig108154.1734.1 ID=mRNA_M-pyrifera_M_contig108154.1734.1|Name=mRNA_M-pyrifera_M_contig108154.1734.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig108154:43..312+ (Macrocystis pyrifera P11B4 male)
GTGCTGACGCGGCGGCAGTGCGACCTGGCGAAGGAGGGCATCTGCGAGGA
TAAGAGGCAGATGGACAAGTTCTGCGAGGAGCACGGGTTTATCGGTTGGT
TCGAGACCTCCGCCAAGGATGACTTGGGCATCGAAGACGCCTCGAAGCAT
CTGGTGGGAAAGATCCTCGAGAACGACACGACGCGCGGCAGCAACGCCCC
CAAGAAGCCCTCGGGCGTCAGCCTCGACGCACGTCCTGCGCCGCAGCAGA
AGGACAGTGGCTGCTGCTAGGTGCTGACGCGGCGGCAGTGCGACCTGGCG
AAGGAGGGCATCTGCGAGGATAAGAGGCAGATGGACAAGTTCTGCGAGGA
GCACGGGTTTATCGGTTGGTTCGAGACCTCCGCCAAGGATGACTTGGGCA
TCGAAGACGCCTCGAAGCATCTGGTGGGAAAGATCCTCGAGAACGACACG
ACGCGCGGCAGCAACGCCCCCAAGAAGCCCTCGGGCGTCAGCCTCGACGC
ACGTCCTGCGCCGCAGCAGAAGGACAGTGGCTGCTGCTAG
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