mRNA_M-pyrifera_M_contig10815.1732.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 141 bits (355), Expect = 6.060e-36 Identity = 77/144 (53.47%), Postives = 93/144 (64.58%), Query Frame = 2 Query: 71 DVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQK-DPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLI-RLKCTE*FGGASLHPRWRHSSEEWSIANAGLRAFDEQGLGPSRGGFIDDMQ 496 DVCC+VP+E F+ D + D ++FGTTSL F +LVE V I VKVLY K D GH+V++GP FQL TCLQ+LR GL C HVLA L+ RLK ++ F G S+HPRWR S E WSIA L FD G G GGF D + Sbjct: 393 DVCCQVPKEVFEED---EAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQSIHPRWRSSVEPWSIAEVKLGTFDGDGDGSYDGGFTGDWE 533
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.410e-28 Identity = 59/123 (47.97%), Postives = 72/123 (58.54%), Query Frame = 2 Query: 71 DVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRLKCTE*FGGASLHPRWR-HSSEEWSIANAGL 436 DVCCEVP EAFD + + FG L F +LV +V I VKV Y + P H+VVLGP FQ+ TCLQ++R G C HVLA L+R F GAS+HPRWR S+E WS+ L Sbjct: 47 DVCCEVPREAFDGKDNPETK----FGAICLQSFFRLVANVKIDAGVKVSYKYRSPTVSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALVRSNRDSEFAGASIHPRWRPRSAEPWSLERVAL 165
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.070e-24 Identity = 65/144 (45.14%), Postives = 85/144 (59.03%), Query Frame = 2 Query: 71 DVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGI---GTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLI-RLKCTE*FGGASLHPRWRHSS-EEWSIANAGLRAFDEQGLGPSRGGFID 487 DVCC+VP + FD +K D S+FGTT L F +LV V I VKV+Y ++ GH+VV+GP FQL CLQ++R GL C HVLA L+ L F G +HPRWR +S + WS+ L +FDE+G +G F D Sbjct: 1218 DVCCQVPADVFDG---KKHPDTSMFGTTCLQSFYRLVAHVDIYMGDAVVKVVYKRRK--VGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGEFIHPRWRPNSVDTWSLDKVELGSFDEEGRTSYKGRFQD 1356
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 4.730e-13 Identity = 44/119 (36.97%), Postives = 60/119 (50.42%), Query Frame = 2 Query: 113 ADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL----------KCTE*FGGASLHPRWRHSSE----EWSIAN 427 A + +D +++ TSL F L+ED+ I V V Y H+VV GPHNF L +CLQ+LR LPC H A L+ L T F GA +H RWR + W+I++ Sbjct: 915 AGEAAVDNTMWARTSLSAFLDLIEDIPIELVVAVRYKWTANRPSHLVVFGPHNFHLCSCLQLLRRRLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREDGNDSSWTISS 1033
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 8.800e-13 Identity = 43/117 (36.75%), Postives = 59/117 (50.43%), Query Frame = 2 Query: 119 QKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL----------KCTE*FGGASLHPRWRHSSE----EWSIAN 427 + +D +++ SL F L+ED+ I V V Y + H+VV GPHNF L +CLQ+LR GLPC H A L+ L F GA +H RWR + WSI++ Sbjct: 1140 EAAVDNTMWARASLSAFLDLIEDIPIQLVVAVRYMRAANRPSHLVVFGPHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFIHTFKGACVHNRWRRREDGNDSPWSISS 1256
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5KTX9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX9_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 2.360e-11 Identity = 46/131 (35.11%), Postives = 65/131 (49.62%), Query Frame = 2 Query: 152 TSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRLK------CTE*FGGASLHPRWRHS----SEEWSIANAGLRAFDEQGLGPSRGGFIDDMQGMEFGD 514 TS F +L+ +V I V V Y HI+V GP+NF L +CL++LR GLPC H A L+R F G+S+H RWR S + WS+++ +A +G G D+ +G F D Sbjct: 187 TSSSTFLELLGNVPIHLAVLVRYQLTRTKQSHIIVFGPNNFHLCSCLKLLRLGLPCRHYFAALLRFLGGVYRGIRHDFHGSSVHNRWRKSPGGNDDPWSVSSVLQQAGLGKGWDGRDEGLDDNYEGPTFDD 317
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5KKN6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN6_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 4.670e-9 Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 2 Query: 113 ADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL 349 A + +D +++ TSL L+ED+ I V V Y H+VV GPHN L +CLQ+LR GLPC H A L+ L Sbjct: 264 AGEAAVDNTMWAPTSLSASLDLIEDIPIELVVAVRYKWTPNRPSHLVVFGPHNLHLCSCLQLLRRGLPCRHYFAVLVSL 342
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5KAB1_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB1_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 7.860e-9 Identity = 40/131 (30.53%), Postives = 59/131 (45.04%), Query Frame = 2 Query: 62 QPKDVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL-------KCTE*FGGASLHPRWRHSS----EEWSI 421 QP ++ E + ++D S++ TSL F L +DV V Y H++V GP +F L +CL++L+ GLPC H A L+ F A +H RWR +S E WS+ Sbjct: 463 QPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQDVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQASDVDDEPWSV 593
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5KFX8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX8_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 1.710e-8 Identity = 39/132 (29.55%), Postives = 59/132 (44.70%), Query Frame = 2 Query: 62 QPKDVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL-------KCTE*FGGASLHPRWRHS----SEEWSIA 424 QP ++ E + ++D S++ TSL F L +DV V Y H++V GP +F L +CL++L+ GLPC H A L+ F A +H RWR + E WS++ Sbjct: 77 QPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQDVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQAPDVDDEPWSVS 208
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 2.040e-8 Identity = 39/132 (29.55%), Postives = 59/132 (44.70%), Query Frame = 2 Query: 62 QPKDVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL-------KCTE*FGGASLHPRWRHS----SEEWSIA 424 QP ++ E + ++D S++ TSL F L +DV V Y H++V GP +F L +CL++L+ GLPC H A L+ F A +H RWR + E WS++ Sbjct: 440 QPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQDVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQAPDVDDEPWSVS 571 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10815.1732.1 >prot_M-pyrifera_M_contig10815.1732.1 ID=prot_M-pyrifera_M_contig10815.1732.1|Name=mRNA_M-pyrifera_M_contig10815.1732.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp MDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQback to top mRNA from alignment at M-pyrifera_M_contig10815:6453..6985+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig10815.1732.1 ID=mRNA_M-pyrifera_M_contig10815.1732.1|Name=mRNA_M-pyrifera_M_contig10815.1732.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=533bp|location=Sequence derived from alignment at M-pyrifera_M_contig10815:6453..6985+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig10815:6453..6985+ >mRNA_M-pyrifera_M_contig10815.1732.1 ID=mRNA_M-pyrifera_M_contig10815.1732.1|Name=mRNA_M-pyrifera_M_contig10815.1732.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig10815:6453..6985+ (Macrocystis pyrifera P11B4 male)back to top |