mRNA_M-pyrifera_M_contig10815.1732.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10815.1732.1
Unique NamemRNA_M-pyrifera_M_contig10815.1732.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 6.060e-36
Identity = 77/144 (53.47%), Postives = 93/144 (64.58%), Query Frame = 2
Query:   71 DVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQK-DPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLI-RLKCTE*FGGASLHPRWRHSSEEWSIANAGLRAFDEQGLGPSRGGFIDDMQ 496
            DVCC+VP+E F+ D   +  D ++FGTTSL  F +LVE V I   VKVLY  K D   GH+V++GP  FQL TCLQ+LR GL C HVLA L+ RLK ++ F G S+HPRWR S E WSIA   L  FD  G G   GGF  D +
Sbjct:  393 DVCCQVPKEVFEED---EAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQSIHPRWRSSVEPWSIAEVKLGTFDGDGDGSYDGGFTGDWE 533          
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.410e-28
Identity = 59/123 (47.97%), Postives = 72/123 (58.54%), Query Frame = 2
Query:   71 DVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRLKCTE*FGGASLHPRWR-HSSEEWSIANAGL 436
            DVCCEVP EAFD   + +      FG   L  F +LV +V I   VKV Y  + P   H+VVLGP  FQ+ TCLQ++R G  C HVLA L+R      F GAS+HPRWR  S+E WS+    L
Sbjct:   47 DVCCEVPREAFDGKDNPETK----FGAICLQSFFRLVANVKIDAGVKVSYKYRSPTVSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALVRSNRDSEFAGASIHPRWRPRSAEPWSLERVAL 165          
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.070e-24
Identity = 65/144 (45.14%), Postives = 85/144 (59.03%), Query Frame = 2
Query:   71 DVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGI---GTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLI-RLKCTE*FGGASLHPRWRHSS-EEWSIANAGLRAFDEQGLGPSRGGFID 487
            DVCC+VP + FD    +K  D S+FGTT L  F +LV  V I      VKV+Y ++    GH+VV+GP  FQL  CLQ++R GL C HVLA L+  L     F G  +HPRWR +S + WS+    L +FDE+G    +G F D
Sbjct: 1218 DVCCQVPADVFDG---KKHPDTSMFGTTCLQSFYRLVAHVDIYMGDAVVKVVYKRRK--VGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGEFIHPRWRPNSVDTWSLDKVELGSFDEEGRTSYKGRFQD 1356          
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.730e-13
Identity = 44/119 (36.97%), Postives = 60/119 (50.42%), Query Frame = 2
Query:  113 ADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL----------KCTE*FGGASLHPRWRHSSE----EWSIAN 427
            A +  +D +++  TSL  F  L+ED+ I   V V Y        H+VV GPHNF L +CLQ+LR  LPC H  A L+ L            T  F GA +H RWR   +     W+I++
Sbjct:  915 AGEAAVDNTMWARTSLSAFLDLIEDIPIELVVAVRYKWTANRPSHLVVFGPHNFHLCSCLQLLRRRLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREDGNDSSWTISS 1033          
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 8.800e-13
Identity = 43/117 (36.75%), Postives = 59/117 (50.43%), Query Frame = 2
Query:  119 QKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL----------KCTE*FGGASLHPRWRHSSE----EWSIAN 427
            +  +D +++   SL  F  L+ED+ I   V V Y +      H+VV GPHNF L +CLQ+LR GLPC H  A L+ L               F GA +H RWR   +     WSI++
Sbjct: 1140 EAAVDNTMWARASLSAFLDLIEDIPIQLVVAVRYMRAANRPSHLVVFGPHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFIHTFKGACVHNRWRRREDGNDSPWSISS 1256          
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5KTX9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.360e-11
Identity = 46/131 (35.11%), Postives = 65/131 (49.62%), Query Frame = 2
Query:  152 TSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRLK------CTE*FGGASLHPRWRHS----SEEWSIANAGLRAFDEQGLGPSRGGFIDDMQGMEFGD 514
            TS   F +L+ +V I   V V Y        HI+V GP+NF L +CL++LR GLPC H  A L+R            F G+S+H RWR S     + WS+++   +A   +G      G  D+ +G  F D
Sbjct:  187 TSSSTFLELLGNVPIHLAVLVRYQLTRTKQSHIIVFGPNNFHLCSCLKLLRLGLPCRHYFAALLRFLGGVYRGIRHDFHGSSVHNRWRKSPGGNDDPWSVSSVLQQAGLGKGWDGRDEGLDDNYEGPTFDD 317          
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5KKN6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.670e-9
Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 2
Query:  113 ADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL 349
            A +  +D +++  TSL     L+ED+ I   V V Y        H+VV GPHN  L +CLQ+LR GLPC H  A L+ L
Sbjct:  264 AGEAAVDNTMWAPTSLSASLDLIEDIPIELVVAVRYKWTPNRPSHLVVFGPHNLHLCSCLQLLRRGLPCRHYFAVLVSL 342          
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5KAB1_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.860e-9
Identity = 40/131 (30.53%), Postives = 59/131 (45.04%), Query Frame = 2
Query:   62 QPKDVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL-------KCTE*FGGASLHPRWRHSS----EEWSI 421
            QP     ++ E   +      ++D S++  TSL  F  L +DV       V Y        H++V GP +F L +CL++L+ GLPC H  A L+              F  A +H RWR +S    E WS+
Sbjct:  463 QPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQDVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQASDVDDEPWSV 593          
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5KFX8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX8_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.710e-8
Identity = 39/132 (29.55%), Postives = 59/132 (44.70%), Query Frame = 2
Query:   62 QPKDVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL-------KCTE*FGGASLHPRWRHS----SEEWSIA 424
            QP     ++ E   +      ++D S++  TSL  F  L +DV       V Y        H++V GP +F L +CL++L+ GLPC H  A L+              F  A +H RWR +     E WS++
Sbjct:   77 QPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQDVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQAPDVDDEPWSVS 208          
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.040e-8
Identity = 39/132 (29.55%), Postives = 59/132 (44.70%), Query Frame = 2
Query:   62 QPKDVCCEVPEEAFDSDADQKVMDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQLFTCLQILRTGLPCSHVLADLIRL-------KCTE*FGGASLHPRWRHS----SEEWSIA 424
            QP     ++ E   +      ++D S++  TSL  F  L +DV       V Y        H++V GP +F L +CL++L+ GLPC H  A L+              F  A +H RWR +     E WS++
Sbjct:  440 QPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQDVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQAPDVDDEPWSVS 571          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10815.1732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FLF6_ECTSI6.060e-3653.47Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K6K4_9PHAE1.410e-2847.97SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE1.070e-2445.14SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBY4_9PHAE4.730e-1336.97SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9T1_9PHAE8.800e-1336.75SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KTX9_9PHAE2.360e-1135.11SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KKN6_9PHAE4.670e-941.77SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAB1_9PHAE7.860e-930.53SWIM-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KFX8_9PHAE1.710e-829.55SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JP13_9PHAE2.040e-829.55SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10815contigM-pyrifera_M_contig10815:6453..6985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1e-13
Seed eggNOG ortholog2880.D7FLF6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size533
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10815.1732.1prot_M-pyrifera_M_contig10815.1732.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10815 6580..6816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.320242-UTR-M-pyrifera_M_contig10815:6452..65791622815591.320242-UTR-M-pyrifera_M_contig10815:6452..6579Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10815 6453..6579 +
1692277477.9089985-UTR-M-pyrifera_M_contig10815:6452..65791692277477.9089985-UTR-M-pyrifera_M_contig10815:6452..6579Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10815 6453..6579 +
1622815591.3440547-UTR-M-pyrifera_M_contig10815:6816..69851622815591.3440547-UTR-M-pyrifera_M_contig10815:6816..6985Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10815 6817..6985 +
1692277477.933075-UTR-M-pyrifera_M_contig10815:6816..69851692277477.933075-UTR-M-pyrifera_M_contig10815:6816..6985Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10815 6817..6985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.3338504-CDS-M-pyrifera_M_contig10815:6579..68161622815591.3338504-CDS-M-pyrifera_M_contig10815:6579..6816Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10815 6580..6816 +
1692277477.9237783-CDS-M-pyrifera_M_contig10815:6579..68161692277477.9237783-CDS-M-pyrifera_M_contig10815:6579..6816Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10815 6580..6816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10815.1732.1

>prot_M-pyrifera_M_contig10815.1732.1 ID=prot_M-pyrifera_M_contig10815.1732.1|Name=mRNA_M-pyrifera_M_contig10815.1732.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MDLSIFGTTSLVFFAKLVEDVGIGTFVKVLYAQKDPPAGHIVVLGPHNFQ
LFTCLQILRTGLPCSHVLADLIRLKCTE*
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mRNA from alignment at M-pyrifera_M_contig10815:6453..6985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10815.1732.1 ID=mRNA_M-pyrifera_M_contig10815.1732.1|Name=mRNA_M-pyrifera_M_contig10815.1732.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=533bp|location=Sequence derived from alignment at M-pyrifera_M_contig10815:6453..6985+ (Macrocystis pyrifera P11B4 male)
CCTTGAAAGGAGTTGACGCAGGGAATTCCTGATGGATTAGGCTATCGGGC TCGAGGACGGCCAACCCAAAGACGTGTGCTGTGAGGTGCCAGAGGAAGCC TTTGACAGCGACGCAGACCAGAAAGTAATGGATCTCTCCATATTTGGCAC GACGTCCTTGGTTTTTTTTGCCAAGCTTGTTGAGGATGTAGGGATCGGCA CGTTCGTTAAGGTGTTGTACGCGCAGAAGGACCCACCGGCTGGTCACATT GTTGTTCTTGGGCCTCACAACTTCCAGCTGTTCACGTGTTTGCAGATACT AAGAACTGGGTTGCCATGTAGCCACGTGTTAGCCGATCTCATTCGATTAA AGTGCACCGAATAGTTCGGTGGGGCGTCCCTTCACCCCCGTTGGCGACAC AGCTCAGAGGAATGGAGTATCGCGAATGCGGGGCTTCGCGCGTTTGACGA GCAAGGTTTGGGACCGTCTCGTGGTGGGTTCATCGACGATATGCAGGGTA TGGAGTTTGGGGATTGCCCGGATAATGTTGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10815:6453..6985+

>mRNA_M-pyrifera_M_contig10815.1732.1 ID=mRNA_M-pyrifera_M_contig10815.1732.1|Name=mRNA_M-pyrifera_M_contig10815.1732.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig10815:6453..6985+ (Macrocystis pyrifera P11B4 male)
ATGGATCTCTCCATATTTGGCACGACGTCCTTGGTTTTTTTTGCCAAGCT
TGTTGAGGATGTAGGGATCGGCACGTTCGTTAAGGTGTTGTACGCGCAGA
AGGACCCACCGGCTGGTCACATTGTTGTTCTTGGGCCTCACAACTTCCAG
CTGTTCACGTGTTTGCAGATACTAAGAACTGGGTTGCCATGTAGCCACGT
GTTAGCCGATCTCATTCGATTAAAGTGCACCGAATAGATGGATCTCTCCA
TATTTGGCACGACGTCCTTGGTTTTTTTTGCCAAGCTTGTTGAGGATGTA
GGGATCGGCACGTTCGTTAAGGTGTTGTACGCGCAGAAGGACCCACCGGC
TGGTCACATTGTTGTTCTTGGGCCTCACAACTTCCAGCTGTTCACGTGTT
TGCAGATACTAAGAACTGGGTTGCCATGTAGCCACGTGTTAGCCGATCTC
ATTCGATTAAAGTGCACCGAATAG
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