mRNA_M-pyrifera_M_contig108149.1731.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108149.1731.1
Unique NamemRNA_M-pyrifera_M_contig108149.1731.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108149.1731.1 vs. uniprot
Match: J9K137_ACYPI (TPT domain-containing protein n=12 Tax=Aphididae TaxID=27482 RepID=J9K137_ACYPI)

HSP 1 Score: 103 bits (256), Expect = 1.200e-23
Identity = 59/140 (42.14%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    1 WYLASSLSNNTNKQILNVFPRPMVLSVVQLGCIAVYSTLYLLYQGKMKVISVRQLIWF--VLPLSISNFCSHVFTYTSLKEVPVSFVHTVKATSPLFTVLVSFLALGKTYSWKMLLSLLPVVIGVTICTFSEASVTTLGI 414
            WY+ SS SN   K +LN FP PM +++VQL  IAVYS  +    G  + + +    +F  ++PL++  F   VFT+ SL +VPVS+ HT+KAT PLF+V++S + LG+    K+ LSL+P++ GV I +F+E S   +G+
Sbjct:   18 WYVVSSGSNVVGKTLLNQFPYPMTVTMVQLLSIAVYSGPFFNLWGVRRFVDISWPYYFKYIVPLALGKFVGSVFTHVSLWKVPVSYTHTIKATMPLFSVILSRIILGEKQCLKVYLSLVPIIAGVAIASFTEISFDVIGL 157          
BLAST of mRNA_M-pyrifera_M_contig108149.1731.1 vs. uniprot
Match: A0A8I6TE92_CIMLE (TPT domain-containing protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6TE92_CIMLE)

HSP 1 Score: 102 bits (254), Expect = 2.470e-23
Identity = 60/140 (42.86%), Postives = 91/140 (65.00%), Query Frame = 1
Query:    1 WYLASSLSNNTNKQILNVFPRPMVLSVVQLGCIAVYSTLYLLYQGKMKVISVRQLIWF--VLPLSISNFCSHVFTYTSLKEVPVSFVHTVKATSPLFTVLVSFLALGKTYSWKMLLSLLPVVIGVTICTFSEASVTTLGI 414
            WY+ SS +N   K +LN FP PM +++VQL  I +YS  +    G  +  S     +F  ++PL++  F + VFT+ S+ +VPVS+ HTVKAT PLFTV++S + LG+ ++ K+ LSL+P+V+GV I T +E S   LG+
Sbjct:   20 WYVVSSSNNVVGKMLLNDFPYPMTVTMVQLLSITLYSGPFFNLWGVRRASSFSWKFYFKFLVPLALGKFVASVFTHVSIWKVPVSYAHTVKATMPLFTVVLSRIILGEKHTLKVYLSLVPIVLGVIIATMTELSFDLLGL 159          
BLAST of mRNA_M-pyrifera_M_contig108149.1731.1 vs. uniprot
Match: UPI001C9D46E8 (solute carrier family 35 member E1 homolog n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9D46E8)

HSP 1 Score: 101 bits (252), Expect = 4.610e-23
Identity = 60/142 (42.25%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    1 WYLASSLSNNTNKQILNVFPRPMVLSVVQLGCIAVYS----TLYLLYQGKMKVISVRQLIWFVLPLSISNFCSHVFTYTSLKEVPVSFVHTVKATSPLFTVLVSFLALGKTYSWKMLLSLLPVVIGVTICTFSEASVTTLGI 414
            WY+ SS SN   K +L+ FP PM +++VQL  I +YS     L+ + Q K   +S       ++PL++  F  +VF++ S+ +VPVS+ HTVKAT PLFTV++S L L +  +WK+ +SL P+V+GV I T +E S   LG+
Sbjct:   20 WYIVSSSSNVVGKLLLSDFPYPMTVTMVQLTSITLYSGPFFNLWGVRQYKNSEVSWNYYFKLIVPLALGKFVGNVFSHVSIWKVPVSYAHTVKATMPLFTVILSRLILREKQTWKVYISLGPIVLGVAIATLTELSFNMLGL 161          
BLAST of mRNA_M-pyrifera_M_contig108149.1731.1 vs. uniprot
Match: UPI001E6733FF (solute carrier family 35 member E1 homolog isoform X1 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E6733FF)

HSP 1 Score: 102 bits (254), Expect = 5.620e-23
Identity = 58/140 (41.43%), Postives = 89/140 (63.57%), Query Frame = 1
Query:    1 WYLASSLSNNTNKQILNVFPRPMVLSVVQLGCIAVYSTLYLLYQGKMKVISVRQLIW--FVLPLSISNFCSHVFTYTSLKEVPVSFVHTVKATSPLFTVLVSFLALGKTYSWKMLLSLLPVVIGVTICTFSEASVTTLGI 414
            WYL SS +N   K +LN FP PM +++VQL  IAVYS+  L + G  +   +    +   V+PL++  F + VF++ S+  VPVS+ HTVKAT PLFT+L++ +  G+  + K+  SL+P+++GV I T +E S   LG+
Sbjct:   20 WYLVSSSNNVVGKTLLNEFPYPMTVTMVQLMSIAVYSSPVLRWMGVRRTADISWSYYKRIVIPLALGKFVASVFSHVSIWRVPVSYAHTVKATMPLFTILLARVLFGEKQTTKVYFSLVPIILGVAIATITEISFDMLGL 159          
BLAST of mRNA_M-pyrifera_M_contig108149.1731.1 vs. uniprot
Match: A0A8K0KDY8_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KDY8_LADFU)

HSP 1 Score: 101 bits (251), Expect = 6.780e-23
Identity = 57/140 (40.71%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    1 WYLASSLSNNTNKQILNVFPRPMVLSVVQLGCIAVYSTLYLLYQGKMKVISV--RQLIWFVLPLSISNFCSHVFTYTSLKEVPVSFVHTVKATSPLFTVLVSFLALGKTYSWKMLLSLLPVVIGVTICTFSEASVTTLGI 414
            WY+ SS +N   K +LN FP P+ +++VQL  I +YS  +    G  + I +  +  +  ++PL++  F + VF++ S+ +VPVS+ HTVKAT PLFTV++S + L +  SWK+ LSL P++IGV I T +E S   +G+
Sbjct:   20 WYVISSSNNVIGKMLLNDFPYPVTVTMVQLTSITLYSGPFFNLWGIRRFIDISWKYYLKMIVPLALGKFLASVFSHVSIWKVPVSYAHTVKATMPLFTVVLSRIILKEKQSWKVYLSLAPIIIGVAIATLTELSFDIIGL 159          
BLAST of mRNA_M-pyrifera_M_contig108149.1731.1 vs. uniprot
Match: UPI000C20287E (solute carrier family 35 member E1 homolog n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20287E)

HSP 1 Score: 101 bits (251), Expect = 7.790e-23
Identity = 58/140 (41.43%), Postives = 89/140 (63.57%), Query Frame = 1
Query:    1 WYLASSLSNNTNKQILNVFPRPMVLSVVQLGCIAVYSTLYLLYQGKMKVISVRQLIWF--VLPLSISNFCSHVFTYTSLKEVPVSFVHTVKATSPLFTVLVSFLALGKTYSWKMLLSLLPVVIGVTICTFSEASVTTLGI 414
            WY  SS +N   K +LN FP PM +++VQL  I +YS  +    G  K + +    +F  V+PL+   F + VF++ S+ +VPVS+ HTVKAT PLFTV++S L +G+  ++K+ LSL+P++ GV I T +E S   +G+
Sbjct:   21 WYAVSSSNNVIGKTLLNEFPYPMTMTMVQLLSITLYSGPFFNLYGVRKYVDIGWRYYFKLVIPLAFGKFFASVFSHVSIWKVPVSYAHTVKATMPLFTVILSRLIMGEKQTFKVYLSLIPIITGVAIATVTEISFDMIGL 160          
BLAST of mRNA_M-pyrifera_M_contig108149.1731.1 vs. uniprot
Match: A0A5N4AAI0_PHOPY (TPT domain-containing protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AAI0_PHOPY)

HSP 1 Score: 102 bits (253), Expect = 7.970e-23
Identity = 56/140 (40.00%), Postives = 89/140 (63.57%), Query Frame = 1
Query:    1 WYLASSLSNNTNKQILNVFPRPMVLSVVQLGCIAVYSTLYLLYQGKMKVISVRQLIWF--VLPLSISNFCSHVFTYTSLKEVPVSFVHTVKATSPLFTVLVSFLALGKTYSWKMLLSLLPVVIGVTICTFSEASVTTLGI 414
            WY+ SS +N   K +LN FP PM +++VQL  I +YS  +    G  K + +    +F  ++PL+   F S VF++ S+ +VPVS+ HTVKAT PLFTV++S L +G+  ++K+  SL+P++ GV + T +E S   +G+
Sbjct:   74 WYIISSSNNVIGKMLLNEFPYPMTMTMVQLLSITIYSGPFFNMWGVRKYVDISWRYYFKLIVPLAFGKFFSSVFSHVSIWKVPVSYAHTVKATMPLFTVILSRLIMGEKQTYKVYFSLIPIIAGVGVATITEISFDAIGL 213          
BLAST of mRNA_M-pyrifera_M_contig108149.1731.1 vs. uniprot
Match: UPI000C76CC8C (solute carrier family 35 member E1 homolog n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76CC8C)

HSP 1 Score: 100 bits (249), Expect = 9.750e-23
Identity = 61/146 (41.78%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    1 WYLASSLSNNTNKQILNVFPRPMVLSVVQLGCIAVYSTLYLLYQGKMKVISVRQL---IW-----FVLPLSISNFCSHVFTYTSLKEVPVSFVHTVKATSPLFTVLVSFLALGKTYSWKMLLSLLPVVIGVTICTFSEASVTTLGI 414
            WY+ SS +    K IL+ FP PM +++VQL  IAV+S         +KV+ VRQ     W      ++PL++  F S V  + S+ +VPVS+ HTVKA+ P+FTVL+S + LG+T+S+ + LSLLP+V GV + T +E S   +G+
Sbjct:   22 WYIVSSSNGVLGKMILSQFPYPMTVTMVQLTSIAVWSV------PMLKVLDVRQYESSTWSYHKKMLIPLALGKFLSSVLAHISIWKVPVSYAHTVKASMPIFTVLISRILLGETHSYSLYLSLLPIVFGVAVATVTEISFDIIGL 161          
BLAST of mRNA_M-pyrifera_M_contig108149.1731.1 vs. uniprot
Match: A0A5E4NC12_9HEMI (TPT domain-containing protein n=1 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4NC12_9HEMI)

HSP 1 Score: 100 bits (248), Expect = 1.140e-22
Identity = 58/140 (41.43%), Postives = 89/140 (63.57%), Query Frame = 1
Query:    1 WYLASSLSNNTNKQILNVFPRPMVLSVVQLGCIAVYSTLYLLYQGKMKVISVRQLIWF--VLPLSISNFCSHVFTYTSLKEVPVSFVHTVKATSPLFTVLVSFLALGKTYSWKMLLSLLPVVIGVTICTFSEASVTTLGI 414
            WY+ SS SN   K +LN FP PM +++VQL  IA+YS  +    G  + + +    +F  ++PL++  F   VFT+ SL +VPVS+ HTVKAT PLF+V++S + LG+    K+ LSL+P++ GV I + +E S   +G+
Sbjct:   18 WYVVSSGSNVVGKTLLNQFPYPMTVTMVQLLSIAIYSGPFFNLWGVRRFVDISWPYYFKLIVPLALGKFVGSVFTHVSLWKVPVSYTHTVKATMPLFSVILSRIILGEKQCLKVYLSLVPIIAGVAIASVTELSFDLIGL 157          
BLAST of mRNA_M-pyrifera_M_contig108149.1731.1 vs. uniprot
Match: A0A7R9E488_9NEOP (Hypothetical protein n=1 Tax=Timema monikensis TaxID=170555 RepID=A0A7R9E488_9NEOP)

HSP 1 Score: 99.8 bits (247), Expect = 1.360e-22
Identity = 57/140 (40.71%), Postives = 89/140 (63.57%), Query Frame = 1
Query:    1 WYLASSLSNNTNKQILNVFPRPMVLSVVQLGCIAVYSTLYLLYQGKMKVISV--RQLIWFVLPLSISNFCSHVFTYTSLKEVPVSFVHTVKATSPLFTVLVSFLALGKTYSWKMLLSLLPVVIGVTICTFSEASVTTLGI 414
            WY+ SS +N   K +LN FP PM +++VQL  I +YS       G  + + +  R  I  +LPL++  F + VF++ S+ +VPVS+ HTVKAT PLFTV++S + L +  S K+ +SL+P+++GV I T +E S   +G+
Sbjct:   27 WYIISSSNNVIGKMLLNDFPFPMTVTMVQLTSITIYSGPIFNMWGVRRFVDIGWRYYIKMILPLAVGKFLASVFSHVSIWKVPVSYAHTVKATMPLFTVILSRIILREKQSCKVYMSLVPIILGVAIATATEISFDVIGL 166          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108149.1731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
J9K137_ACYPI1.200e-2342.14TPT domain-containing protein n=12 Tax=Aphididae T... [more]
A0A8I6TE92_CIMLE2.470e-2342.86TPT domain-containing protein n=1 Tax=Cimex lectul... [more]
UPI001C9D46E84.610e-2342.25solute carrier family 35 member E1 homolog n=1 Tax... [more]
UPI001E6733FF5.620e-2341.43solute carrier family 35 member E1 homolog isoform... [more]
A0A8K0KDY8_LADFU6.780e-2340.71Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
UPI000C20287E7.790e-2341.43solute carrier family 35 member E1 homolog n=1 Tax... [more]
A0A5N4AAI0_PHOPY7.970e-2340.00TPT domain-containing protein n=2 Tax=Photinus pyr... [more]
UPI000C76CC8C9.750e-2341.78solute carrier family 35 member E1 homolog n=1 Tax... [more]
A0A5E4NC12_9HEMI1.140e-2241.43TPT domain-containing protein n=1 Tax=Cinara cedri... [more]
A0A7R9E488_9NEOP1.360e-2240.71Hypothetical protein n=1 Tax=Timema monikensis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108149contigM-pyrifera_M_contig108149:49..614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score103.6
Seed ortholog evalue7.5e-20
Seed eggNOG ortholog7029.ACYPI006457-PA
KEGG koko:K15283
KEGG TC2.A.7.9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Triose-phosphate Transporter family
EggNOG OGs38CDQ@33154,3BBR4@33208,3CSWF@33213,3ECU1@33342,3SFNF@50557,41VW0@6656,KOG1441@1,KOG1441@2759
COG Functional cat.EG
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.2699087-CDS-M-pyrifera_M_contig108149:48..3151622815591.2699087-CDS-M-pyrifera_M_contig108149:48..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108149 49..315 +
1692277477.878563-CDS-M-pyrifera_M_contig108149:48..3151692277477.878563-CDS-M-pyrifera_M_contig108149:48..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108149 49..315 +
1622815591.282655-CDS-M-pyrifera_M_contig108149:467..6141622815591.282655-CDS-M-pyrifera_M_contig108149:467..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108149 468..614 +
1692277477.8897188-CDS-M-pyrifera_M_contig108149:467..6141692277477.8897188-CDS-M-pyrifera_M_contig108149:467..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108149 468..614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108149.1731.1prot_M-pyrifera_M_contig108149.1731.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108149 49..614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108149.1731.1

>prot_M-pyrifera_M_contig108149.1731.1 ID=prot_M-pyrifera_M_contig108149.1731.1|Name=mRNA_M-pyrifera_M_contig108149.1731.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
WYLASSLSNNTNKQILNVFPRPMVLSVVQLGCIAVYSTLYLLYQGKMKVI
SVRQLIWFVLPLSISNFCSHVFTYTSLKEVPVSFVHTVKATSPLFTVLVS
FLALGKTYSWKMLLSLLPVVIGVTICTFSEASVTTLGI
back to top

mRNA from alignment at M-pyrifera_M_contig108149:49..614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108149.1731.1 ID=mRNA_M-pyrifera_M_contig108149.1731.1|Name=mRNA_M-pyrifera_M_contig108149.1731.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=566bp|location=Sequence derived from alignment at M-pyrifera_M_contig108149:49..614+ (Macrocystis pyrifera P11B4 male)
TGGTACTTGGCCTCTTCACTGTCCAACAACACCAACAAGCAGATCCTTAA TGTGTTCCCGCGGCCCATGGTGCTCTCCGTGGTGCAGCTAGGGTGTATTG CCGTCTATTCGACTCTCTATTTGCTGTACCAGGGAAAGATGAAAGTGATC AGCGTTCGCCAGCTCATTTGGTTCGTGCTACCACTGAGCATTTCGAACTT CTGCTCGCATGTCTTCACCTACACCAGCCTGAAGGAGGTTCCGGTATCGT TCGTACACACTGTGAAGGTATGGCCCTCTCCTGCCATCATGTCATTGACC CCGCCGCCCTGGCTCTCTCGCACTCCTCCCTCCAGGAATCACTCACTCTG CGCGACGTTCTTGAGCTCTCACTCGCGAGCTTGAGCTCTCAAAGGTTGCA AGAAGCTCACGCGAAACAGGCAACGTCTCCTCTCTTTACAGTTCTTGTAT CATTTCTGGCCCTGGGCAAAACGTACAGCTGGAAGATGCTGCTCTCTCTG CTACCCGTCGTCATTGGAGTGACAATCTGCACTTTCAGCGAAGCCTCCGT CACAACACTGGGGATA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108149:49..614+

>mRNA_M-pyrifera_M_contig108149.1731.1 ID=mRNA_M-pyrifera_M_contig108149.1731.1|Name=mRNA_M-pyrifera_M_contig108149.1731.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig108149:49..614+ (Macrocystis pyrifera P11B4 male)
TGGTACTTGGCCTCTTCACTGTCCAACAACACCAACAAGCAGATCCTTAA
TGTGTTCCCGCGGCCCATGGTGCTCTCCGTGGTGCAGCTAGGGTGTATTG
CCGTCTATTCGACTCTCTATTTGCTGTACCAGGGAAAGATGAAAGTGATC
AGCGTTCGCCAGCTCATTTGGTTCGTGCTACCACTGAGCATTTCGAACTT
CTGCTCGCATGTCTTCACCTACACCAGCCTGAAGGAGGTTCCGGTATCGT
TCGTACACACTGTGAAGTGGTACTTGGCCTCTTCACTGTCCAACAACACC
AACAAGCAGATCCTTAATGTGTTCCCGCGGCCCATGGTGCTCTCCGTGGT
GCAGCTAGGGTGTATTGCCGTCTATTCGACTCTCTATTTGCTGTACCAGG
GAAAGATGAAAGTGATCAGCGTTCGCCAGCTCATTTGGTTCGTGCTACCA
CTGAGCATTTCGAACTTCTGCTCGCATGTCTTCACCTACACCAGCCTGAA
GGAGGTTCCGGTATCGTTCGTACACACTGTGAAGGCAACGTCTCCTCTCT
TTACAGTTCTTGTATCATTTCTGGCCCTGGGCAAAACGTACAGCTGGAAG
ATGCTGCTCTCTCTGCTACCCGTCGTCATTGGAGTGACAATCTGCACTTT
CAGCGAAGCCTCCGTCACAACACTGGGGATAGCAACGTCTCCTCTCTTTA
CAGTTCTTGTATCATTTCTGGCCCTGGGCAAAACGTACAGCTGGAAGATG
CTGCTCTCTCTGCTACCCGTCGTCATTGGAGTGACAATCTGCACTTTCAG
CGAAGCCTCCGTCACAACACTGGGGATA
back to top