mRNA_M-pyrifera_M_contig108141.1729.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108141.1729.1
Unique NamemRNA_M-pyrifera_M_contig108141.1729.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108141.1729.1 vs. uniprot
Match: A0A507CE32_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CE32_9FUNG)

HSP 1 Score: 144 bits (362), Expect = 4.350e-36
Identity = 84/207 (40.58%), Postives = 131/207 (63.29%), Query Frame = 1
Query:    1 GRVAKVVEGEGLRVQVAAHTYGRVVLTDIADKFTSKPLAAFKEGQFLYCYVLSVDTAQGRLDLSLRPSRVSPPVAEEEEEREITVVDPEVEDVGELEEGSIVKGYVLPGSNKGSKGKSSGVFVAISRNVTARVFVSELSDDYVKDPSVTYKAGTLVKGRVTKIDQKSGHVEMSLKHSVVSGK---KLVTLSDLNKGMKVKGTVRRVE 612
            GR+ ++    G ++Q+  +  GRV LTDIAD ++ K L A+K GQ + C V+ +D AQ RLDLSLRPSR++  V E++E+  +     EV+ + ++++ ++V G++   S        +G FVAIS  + ARV +S LSD +VKD    Y  G LVKGR+  ++  +G +EM+LK S+V G    K ++LSDL KG K++GTV+ ++
Sbjct: 1300 GRIGQISPATGYQIQLGQNIVGRVYLTDIADTYSRKTLKAYKVGQIVRCCVIDIDAAQRRLDLSLRPSRLAV-VPEQDEDYNV-----EVQSIDDIKQDTVVSGFIKNISE-------NGCFVAISHKLVARVKISGLSDAFVKDWKALYSIGQLVKGRILSVNSATGQIEMTLKASIVDGTAPAKALSLSDLVKGQKLRGTVKAIK 1493          
BLAST of mRNA_M-pyrifera_M_contig108141.1729.1 vs. uniprot
Match: L1JFG5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JFG5_GUITC)

HSP 1 Score: 130 bits (327), Expect = 2.100e-31
Identity = 90/205 (43.90%), Postives = 115/205 (56.10%), Query Frame = 1
Query:    4 RVAKVVEGEGLRVQVAAHTYGRVVLTDIADKFTSKPLAAFKEGQFLYCYVLSVDTAQGRLDLSLRPSRVSPPVAEEEEE--REITVVDPEVEDVGELEEGSIVKGYVLPGSNKGSKGKSSGVFVAISRNVTARVFVSELSDDYVKDPSVTYKAGTLVKGRVTKIDQKSGHVEMSLKHSVVSGKKLVTLSDLNKGMKVKGTVRRVE 612
            ++ K   G G  +++  H++GRV + DIAD     PL+ FK GQ + C VL  +  +    LSLRPSRVS     EEEE  RE     PEV  V EL  G ++ GYV   S       S+GVFV + R VTARV +SELSD YVKD    +  G  V GRV  ++ K   V++SLK SVV GK+ V  SDL  G  V G V+ V+
Sbjct: 1278 KIVKARPGFGFVLKLGLHSFGRVHICDIADAAVDAPLSLFKVGQLVRCCVLEAE--EDGFALSLRPSRVSGKRRGEEEEAVREHGAF-PEVSSVKELAVGQLLSGYVKSAS-------SAGVFVQLGRQVTARVKISELSDGYVKDVKANFPPGRRVSGRVISVEVKKEQVDLSLKRSVVLGKRRVGWSDLQVGQVVAGAVKSVQ 1472          
BLAST of mRNA_M-pyrifera_M_contig108141.1729.1 vs. uniprot
Match: A0A1Y2H2N0_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2H2N0_9FUNG)

HSP 1 Score: 127 bits (320), Expect = 1.840e-30
Identity = 83/208 (39.90%), Postives = 125/208 (60.10%), Query Frame = 1
Query:    1 GRVAKVVEGEGLRVQVAAHTYGRVVLTDIADKF--TSKPLAAFKEGQFLYCYVLSVDTAQGRLDLSLRPSRVSPPVAEEEEEREITVVDPEVEDVGELEEGSIVKGYVLPGSNKGSKGKSSGVFVAISRNVTARVFVSELSDDYVKDPSVTYKAGTLVKGRVTKIDQKSGHVEMSLKHSVV--SGKKLVTLSDLNKGMKVKGTVRRVE 612
            GRV  + +  GL + +    +GRV LT I+D +  + K L  FK+GQ L C+VLSVD++  ++DLSLR SR+SP       E    V DPEV+   ++  G I++G+V   SN   KG    +FVA+S  ++ RV ++ELSDDY+KD    +  G LVK +V  +++    +E++LK S +  S K   TL+D  KG K+KGT++ V+
Sbjct: 1085 GRVGGI-QHAGLDIHLGGKVFGRVHLTHISDVYADSDKLLGGFKKGQILKCFVLSVDSSNKKIDLSLRHSRLSP-------EEHSPVHDPEVKGFADMAAGGILQGFV---SNVADKG----LFVALSPKLSGRVKIAELSDDYLKDWKSNFTVGQLVKAKVVSLNEDRNQIELTLKASQIDPSFKAAQTLADFTKGQKIKGTIKAVK 1277          
BLAST of mRNA_M-pyrifera_M_contig108141.1729.1 vs. uniprot
Match: A0A507E105_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E105_9FUNG)

HSP 1 Score: 124 bits (312), Expect = 2.190e-29
Identity = 77/207 (37.20%), Postives = 119/207 (57.49%), Query Frame = 1
Query:    1 GRVAKVVEGEGLRVQVAAHTYGRVVLTDIADKFTSKPLAAFKEGQFLYCYVLSVDTAQGRLDLSLRPSRVSPPVAEEEEEREITVVDPEVEDVGELEEGSIVKGYVLPGSNKGSKGKSSGVFVAISRNVTARVFVSELSDDYVKDPSVTYKAGTLVKGRVTKIDQKSGHVEMSLKHSVVS---GKKLVTLSDLNKGMKVKGTVRRVE 612
            GR+ K+  G+GL +Q++   +GRV LTD++D +   P+  +  G  + C VLS D  + +LDLSLR SRV    AE        V + EV+ + ++   ++V GY+   S+ G        FV +SRN++ARV +SELSD ++K     ++ G LV+GRV  ++   G +EMSLK SVV        +   ++ KG KVKGTV+ ++
Sbjct: 1326 GRIKKIEAGKGLVIQISPSMHGRVYLTDLSDAYEKDPITNYHVGNVVQCCVLSFDAEKHQLDLSLRDSRVKQTSAE--------VPNVEVKSIEDVVVDTVVSGYIRNVSDVGC-------FVGLSRNLSARVKISELSDAFIKQWKDAFQPGQLVQGRVVSVNSDQGRIEMSLKQSVVDPDVNGLQIKWDNIEKGQKVKGTVKAIK 1517          
BLAST of mRNA_M-pyrifera_M_contig108141.1729.1 vs. uniprot
Match: A0A3N4IDR0_ASCIM (Nucleic acid-binding protein n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4IDR0_ASCIM)

HSP 1 Score: 124 bits (311), Expect = 2.960e-29
Identity = 76/205 (37.07%), Postives = 122/205 (59.51%), Query Frame = 1
Query:    1 GRVAKVVEGEGLRVQVAAHTYGRVVLTDIADKFTSKPLAAFKEGQFLYCYVLSVDTAQGRLDLSLRPSRVSPPVAEEEEEREITVVDPEVEDVGELEEGSIVKGYVLPGSNKGSKGKSSGVFVAISRNVTARVFVSELSDDYVKDPSVTYKAGTLVKGRVTKIDQKSGHVEMSLKHSVVSG--KKLVTLSDLNKGMKVKGTVRRV 609
            GRV KV + + + VQ++    G + LT+IAD +    L+ F  GQ +   V+ +D    R+ LS+RPSRV         + +  V DPE++ + +++ G + +G++   S+KG       VFVA+  NV A V VS+LSD ++K+    Y+   LV+G++T ++   GHV+MSLKHSV+ G  K  +TL++L KGM+V G V+ +
Sbjct: 1142 GRVTKVTDRQ-VYVQISEAISGVIELTNIADNYNEVKLSKFDRGQIIRVCVIDLDVNNKRVTLSMRPSRVM--------DNKAKVEDPEIQTIAQVQVGDVRRGFIRNVSDKG-------VFVALGGNVVAFVRVSDLSDQFIKEWKQAYRVDQLVRGKITAVESALGHVQMSLKHSVIEGALKPELTLNNLKKGMEVDGYVKAI 1330          
BLAST of mRNA_M-pyrifera_M_contig108141.1729.1 vs. uniprot
Match: A0A139AYG6_GONPJ (Nucleic acid-binding protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AYG6_GONPJ)

HSP 1 Score: 122 bits (307), Expect = 1.030e-28
Identity = 83/214 (38.79%), Postives = 119/214 (55.61%), Query Frame = 1
Query:    1 GRVAKVVEGEGLRVQVAA--HTYGRVVLTDIADKFTSKPLAAFKEGQFLYCYVLSVDTAQGRL--DLSLRPSRVSPPVAEEEEEREITVVDPEVEDVGELEEGSIVKGYVLPGSNKGSKGKSSGVFVAISRNVTARVFVSELSDDYVKDPSVTYKAGTLVKGRVTKIDQKSGHVEMSLKHSVVS------GKKLVTLSDLNKGMKVKGTVRRVE 612
            GRV  V E + + V +      +GR  +TD++D+F S P   +  G ++ C +LSV    GR   D+SLRPS++   V+E+       V DPE + V  L  G++V+GYV   ++       SG FV++ RN++ RV + E+SDDYVKD     K G LV+  V  ID     VE++LK SVV+       KK +    L KGMK+ GTVR+VE
Sbjct: 1446 GRVLSVDENKAVNVILGGGKKLFGRAFVTDLSDRFESNPTKKYSVGAYVACRILSVTERDGRTFADVSLRPSQILKKVSEK-------VEDPEFDSVASLSVGAVVRGYVKNVTD-------SGCFVSLGRNLSGRVKIKEMSDDYVKDWKGLVKIGQLVRAEVIGIDTDRNQVELTLKQSVVNPEGYKKAKKKLDWEGLTKGMKLDGTVRKVE 1645          
BLAST of mRNA_M-pyrifera_M_contig108141.1729.1 vs. uniprot
Match: A0A1U7LW81_NEOID (rRNA biogenesis protein rrp5 n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LW81_NEOID)

HSP 1 Score: 116 bits (290), Expect = 1.900e-26
Identity = 82/207 (39.61%), Postives = 123/207 (59.42%), Query Frame = 1
Query:    1 GRVAKVVEGEGLRVQVAAHTYGRVVLTDIADKFTSKPLAAFKEGQFLYCYVLSVDTAQGRLDLSLRPSRVSPPVAEEEEEREITVVDPEVEDVGELEEGSIVKGYVLPGSNKGSKGKSSGVFVAISRNVTARVFVSELSDDYVKDPSVTYKAGTLVKGRVTKIDQKSGHVEMSLKHSVVS---GKKLVTLSDLNKGMKVKGTVRRVE 612
            GRV K+ E +G+ VQ++    GRV LTD++D F+S   A FK GQ     VL VD A  ++ LS R SRV    ++        VVD E+  + +L+ G +V+G++   ++KG       +F+++SRNVTARV +SE+SDDY+KD    +K   L++G++  +D  S  VEMSLK+S +    G +L   ++   G  V GTVR+VE
Sbjct: 1080 GRVTKISE-QGMMVQLSESIIGRVFLTDMSDDFSSG--AQFKNGQIARFCVLDVDQANRKIALSARASRVLSSSSK--------VVDLEILSMDDLKIGQVVRGFIKNIADKG-------LFISLSRNVTARVKISEISDDYIKDWKKLFKPMQLIQGKIINLDSNSKQVEMSLKNSAMGTDLGPRL-GFTEYKIGQIVDGTVRKVE 1267          
BLAST of mRNA_M-pyrifera_M_contig108141.1729.1 vs. uniprot
Match: A0A8B8M8V8_ABRPR (rRNA biogenesis protein RRP5 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8M8V8_ABRPR)

HSP 1 Score: 116 bits (290), Expect = 1.920e-26
Identity = 82/213 (38.50%), Postives = 119/213 (55.87%), Query Frame = 1
Query:    1 GRVAKVVEGEG-LRVQVAAHTYGRVVLTDIADKFTSKPLAAFKEGQFLYCYVLSVD-TAQGRL--DLSLRPSRV--SPPVAEEEEEREITVVDPEVEDVGELEEGSIVKGYVLPGSNKGSKGKSSGVFVAISRNVTARVFVSELSDDYVKDPSVTYKAGTLVKGRVTKIDQKSGHVEMSLKHSVVSGKKLVTLSDLNK---GMKVKGTVRRVE 612
            GRV+KV+ G G L VQ+  H YGRV  T+++D +   PL+ + EGQF+ C VL V  T +G +  DLSLR S +  S   A+  ++         VE + +L    IVKGYV   + KG        F+ +SR + A++ +S LSD+YVKDP   +  G LV GRV  ++  S  VE++LK S +S +    + DL K   G  + G ++RVE
Sbjct: 1258 GRVSKVLPGVGGLLVQIGPHAYGRVHFTELSDTWVPDPLSGYHEGQFVKCVVLEVSHTVKGTIHVDLSLRSSNIMLSQNSADHLDKFVSNAKGKCVEKIDDLHPDMIVKGYVKNVTPKGC-------FIFLSRKIDAKILLSNLSDNYVKDPEKEFPVGKLVIGRVKSVESLSNRVEVTLKTSAISNRPKSEIIDLTKFHVGDVISGKIKRVE 1463          
BLAST of mRNA_M-pyrifera_M_contig108141.1729.1 vs. uniprot
Match: A0A7S0Z871_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z871_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 2.620e-26
Identity = 72/204 (35.29%), Postives = 112/204 (54.90%), Query Frame = 1
Query:    1 GRVAKVVEGEGLRVQVAAHTYGRVVLTDIADKFTSKPLAAFKEGQFLYCYVLSVDTAQGRLDLSLRPSRVSPPVAEEEEEREITVVDPEVEDVGELEEGSIVKGYVLPGSNKGSKGKSSGVFVAISRNVTARVFVSELSDDYVKDPSVTYKAGTLVKGRVTKIDQKSGHVEMSLKHSVVSGKKLVTLSDLNKGMKVKGTVRRVE 612
            G V ++++  GL VQ+ +H+ GRV +TDIADK+ S P A ++ GQ +   V++V    G +DLS+R S++S         +   V D E+ D+  L  G  V+GYV   S KG        F+ +SRN+ A   +S L+D++V DP +++  G LV GR+   D   G VE+S +    +      +S +  G  + GTVRRV+
Sbjct: 1238 GIVTRIIDNVGLMVQLGSHSSGRVHITDIADKYESNPCAGYRTGQVVQVRVINVSPG-GEIDLSMRDSQLS--------NKSGKVTDSEIHDIASLVPGQSVRGYVKATSKKGC-------FITLSRNIDAMCKLSNLADEFVADPVISFPPGKLVSGRIVGADAAKGRVEVSFREREANQGN-TDVSAVEVGSVIMGTVRRVQ 1424          
BLAST of mRNA_M-pyrifera_M_contig108141.1729.1 vs. uniprot
Match: A0A1E3JKV4_9TREE (rRNA biogenesis protein RRP5 n=3 Tax=Cryptococcus TaxID=5206 RepID=A0A1E3JKV4_9TREE)

HSP 1 Score: 114 bits (286), Expect = 6.440e-26
Identity = 80/201 (39.80%), Postives = 115/201 (57.21%), Query Frame = 1
Query:   31 GLRVQVAAHTYGRVVLTDIADKFT----SKPLAAFKEGQFLYCYVLSVDTAQGRLDLSLRPSRVSPPVAEEEEEREITVVDPEVEDVGELEEGSIVKGYVLPGSNKGSKGKSSGVFVAISRNVTARVFVSELSDDYVKDPSVTYKAGTLVKGRVTKIDQKSGHVEMSLKHSVVSGKK---LVTLSDLNKGMKVKGTVRRVE 612
            G  V+++    GRV   D AD  +     KPL+    G+ + CYVL VD ++  +DLS RPSRV         E +  VVD E+  VG+L+EGS V+G V     K   G  SGVFV++ RNVTAR+ + EL D+YVKD    ++ G LV G++  I+  +  +E+SL+ S     K   L++LSD  +G KV  +V++VE
Sbjct:  811 GWMVKISHSIRGRVHPCDAADDLSLVTAQKPLSV---GKHVKCYVLKVDASKRAIDLSTRPSRV---------EGKEDVVDKEISTVGDLKEGSTVRGLV-----KNIAG--SGVFVSLGRNVTARIMIKELFDEYVKDWQSRFEVGQLVSGKIVSINSNTNSIELSLRKSPTRAAKKTALLSLSDFTEGQKVVASVKKVE 992          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108141.1729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A507CE32_9FUNG4.350e-3640.58Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
L1JFG5_GUITC2.100e-3143.90Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A1Y2H2N0_9FUNG1.840e-3039.90Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]
A0A507E105_9FUNG2.190e-2937.20Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A3N4IDR0_ASCIM2.960e-2937.07Nucleic acid-binding protein n=1 Tax=Ascobolus imm... [more]
A0A139AYG6_GONPJ1.030e-2838.79Nucleic acid-binding protein n=1 Tax=Gonapodya pro... [more]
A0A1U7LW81_NEOID1.900e-2639.61rRNA biogenesis protein rrp5 n=1 Tax=Neolecta irre... [more]
A0A8B8M8V8_ABRPR1.920e-2638.50rRNA biogenesis protein RRP5 n=1 Tax=Abrus precato... [more]
A0A7S0Z871_9CHLO2.620e-2635.29Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A1E3JKV4_9TREE6.440e-2639.80rRNA biogenesis protein RRP5 n=3 Tax=Cryptococcus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108141contigM-pyrifera_M_contig108141:4..615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score144.8
Seed ortholog evalue4.4e-32
Seed eggNOG ortholog109760.SPPG_02077T0
Preferred nameRRP5
KEGG koko:K14792
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034463,GO:0034470,GO:0034471,GO:0034511,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.rRNA biogenesis protein RRP5
EggNOG OGs38CAS@33154,3NVPJ@4751,COG0539@1,KOG1070@2759
COG Functional cat.A
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size612
Cds size612
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.1739051-CDS-M-pyrifera_M_contig108141:3..6151622815591.1739051-CDS-M-pyrifera_M_contig108141:3..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108141 4..615 +
1692277477.8454444-CDS-M-pyrifera_M_contig108141:3..6151692277477.8454444-CDS-M-pyrifera_M_contig108141:3..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108141 4..615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108141.1729.1prot_M-pyrifera_M_contig108141.1729.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108141 4..615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108141.1729.1

>prot_M-pyrifera_M_contig108141.1729.1 ID=prot_M-pyrifera_M_contig108141.1729.1|Name=mRNA_M-pyrifera_M_contig108141.1729.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=204bp
GRVAKVVEGEGLRVQVAAHTYGRVVLTDIADKFTSKPLAAFKEGQFLYCY
VLSVDTAQGRLDLSLRPSRVSPPVAEEEEEREITVVDPEVEDVGELEEGS
IVKGYVLPGSNKGSKGKSSGVFVAISRNVTARVFVSELSDDYVKDPSVTY
KAGTLVKGRVTKIDQKSGHVEMSLKHSVVSGKKLVTLSDLNKGMKVKGTV
RRVE
back to top

mRNA from alignment at M-pyrifera_M_contig108141:4..615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108141.1729.1 ID=mRNA_M-pyrifera_M_contig108141.1729.1|Name=mRNA_M-pyrifera_M_contig108141.1729.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig108141:4..615+ (Macrocystis pyrifera P11B4 male)
GGGCGGGTTGCAAAGGTCGTGGAGGGAGAGGGACTGAGGGTCCAAGTGGC AGCCCACACCTACGGCAGAGTTGTCCTCACAGACATCGCCGACAAGTTCA CTTCCAAGCCCCTGGCGGCCTTCAAGGAGGGCCAGTTTCTCTACTGCTAC GTTCTCTCGGTGGACACCGCACAGGGAAGACTTGACCTCTCTCTGAGGCC CTCTCGAGTGTCACCACCGGTGGCAGAGGAGGAAGAGGAGCGAGAGATTA CTGTGGTGGACCCAGAGGTCGAGGACGTGGGCGAGCTGGAGGAGGGCAGC ATCGTGAAGGGCTACGTGCTGCCTGGAAGCAACAAGGGAAGCAAGGGCAA GAGCTCTGGAGTCTTCGTTGCGATCTCTCGCAATGTGACTGCGAGAGTCT TTGTGTCGGAGCTCTCTGACGACTACGTGAAGGACCCCTCCGTCACCTAC AAGGCTGGAACGCTGGTGAAGGGAAGGGTGACGAAGATCGACCAGAAGAG CGGGCACGTGGAGATGTCCCTCAAGCACAGCGTTGTCTCAGGCAAGAAAC TGGTCACTCTCTCCGACCTCAACAAGGGTATGAAGGTGAAGGGCACCGTG CGAAGGGTGGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108141:4..615+

>mRNA_M-pyrifera_M_contig108141.1729.1 ID=mRNA_M-pyrifera_M_contig108141.1729.1|Name=mRNA_M-pyrifera_M_contig108141.1729.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1224bp|location=Sequence derived from alignment at M-pyrifera_M_contig108141:4..615+ (Macrocystis pyrifera P11B4 male)
GGGCGGGTTGCAAAGGTCGTGGAGGGAGAGGGACTGAGGGTCCAAGTGGC
AGCCCACACCTACGGCAGAGTTGTCCTCACAGACATCGCCGACAAGTTCA
CTTCCAAGCCCCTGGCGGCCTTCAAGGAGGGCCAGTTTCTCTACTGCTAC
GTTCTCTCGGTGGACACCGCACAGGGAAGACTTGACCTCTCTCTGAGGCC
CTCTCGAGTGTCACCACCGGTGGCAGAGGAGGAAGAGGAGCGAGAGATTA
CTGTGGTGGACCCAGAGGTCGAGGACGTGGGCGAGCTGGAGGAGGGCAGC
ATCGTGAAGGGCTACGTGCTGCCTGGAAGCAACAAGGGAAGCAAGGGCAA
GAGCTCTGGAGTCTTCGTTGCGATCTCTCGCAATGTGACTGCGAGAGTCT
TTGTGTCGGAGCTCTCTGACGACTACGTGAAGGACCCCTCCGTCACCTAC
AAGGCTGGAACGCTGGTGAAGGGAAGGGTGACGAAGATCGACCAGAAGAG
CGGGCACGTGGAGATGTCCCTCAAGCACAGCGTTGTCTCAGGCAAGAAAC
TGGTCACTCTCTCCGACCTCAACAAGGGTATGAAGGTGAAGGGCACCGTG
CGAAGGGTGGAGGGGCGGGTTGCAAAGGTCGTGGAGGGAGAGGGACTGAG
GGTCCAAGTGGCAGCCCACACCTACGGCAGAGTTGTCCTCACAGACATCG
CCGACAAGTTCACTTCCAAGCCCCTGGCGGCCTTCAAGGAGGGCCAGTTT
CTCTACTGCTACGTTCTCTCGGTGGACACCGCACAGGGAAGACTTGACCT
CTCTCTGAGGCCCTCTCGAGTGTCACCACCGGTGGCAGAGGAGGAAGAGG
AGCGAGAGATTACTGTGGTGGACCCAGAGGTCGAGGACGTGGGCGAGCTG
GAGGAGGGCAGCATCGTGAAGGGCTACGTGCTGCCTGGAAGCAACAAGGG
AAGCAAGGGCAAGAGCTCTGGAGTCTTCGTTGCGATCTCTCGCAATGTGA
CTGCGAGAGTCTTTGTGTCGGAGCTCTCTGACGACTACGTGAAGGACCCC
TCCGTCACCTACAAGGCTGGAACGCTGGTGAAGGGAAGGGTGACGAAGAT
CGACCAGAAGAGCGGGCACGTGGAGATGTCCCTCAAGCACAGCGTTGTCT
CAGGCAAGAAACTGGTCACTCTCTCCGACCTCAACAAGGGTATGAAGGTG
AAGGGCACCGTGCGAAGGGTGGAG
back to top