mRNA_M-pyrifera_M_contig10812.1724.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10812.1724.1
Unique NamemRNA_M-pyrifera_M_contig10812.1724.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10812.1724.1 vs. uniprot
Match: D8LBM5_ECTSI (Similar to 20S proteasome alpha5 subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM5_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 1.190e-123
Identity = 206/291 (70.79%), Postives = 229/291 (78.69%), Query Frame = 1
Query:   19 RRKAPVREKKAYDTSVRAFSPDGSIYQVEYAVQAAQKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVCKIVDIDV-HMFCAMSGLLPDGHLLVDHARAWVQEHRFEFDEAPSVEAVAAQLSRMALKFNGYDAPGEQGEGGNQ----GGLAMSRPVGVALLMAGMDCGGRPVLYHLDPSGAYVQWRARAIGEKSSAAEAKLEKAGPYKGMTVRRAMATVLRVLKDVLGDD-FCVDRLEMVCVDNL---REDDDEEELDESIQGPGRKH-------RRNISRSADGQARGPP 843
            RRKAPVREKKAYDTSVRAFSPDGSIYQVEYAV+AA KGGLTIGVQTD+GLVLAA GRRRSPLLK+SSV KI D+D   M CAMSGLLPDG LL+D+AR WVQEHRFEFDEAPSVEAVA+QLSR+ALKFNGYD  G+ G GG +    GG AMSRPVGVALLMAG+D G RPVLYHLDPSGAYVQWRARAIG+K +AAEAKLE  GP++GM+VRRAMA VL VL++VLGDD F  DRLEMVCVD +   R   D    +  +  PG +H         N+    DG   GPP
Sbjct:   25 RRKAPVREKKAYDTSVRAFSPDGSIYQVEYAVEAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGPAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCVDMMGGGRGSGDGGGGERGVCSPGAEHGATSASDHDNVGGGGDGAISGPP 315          
BLAST of mRNA_M-pyrifera_M_contig10812.1724.1 vs. uniprot
Match: A0A1Y2BW89_9BASI (Proteasome subunit alpha type (Fragment) n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2BW89_9BASI)

HSP 1 Score: 184 bits (468), Expect = 4.710e-53
Identity = 99/211 (46.92%), Postives = 137/211 (64.93%), Query Frame = 1
Query:   52 YDTSVRAFSPDGSIYQVEYAVQAAQKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVCKIVDIDVHMFCAMSGLLPDGHLLVDHARAWVQEHRFEFDEAPSVEAVAAQLSRMALKFNGYDAPGEQGEGGNQGGLAMSRPVGVALLMAGMDCGGRPVLYHLDPSGAYVQWRARAIGEKSSAAEAKLEKAGPYKGMTVRRAMATVLRVLKDVL 684
            YD SV +FSP+G ++QVEYA++A + G  T+G+QT QG+VLA + R +SPLL S SV KI++ID H+ CAMSGL  D   +V+HAR   Q H F +DE   VE+V   +  +AL+F         GEG ++   +MSRP GVALL+AG D  G P LYH DPSG ++++ A+AIG  S  A+ +L+ +   K MT+  A    L+VLK V+
Sbjct:    7 YDRSVSSFSPEGRLFQVEYAIEAIKLGSTTVGIQTSQGVVLAVEKRTQSPLLDSDSVEKIMEIDSHVACAMSGLTADARTMVEHARVTSQNHSFTYDEPIKVESVTQAVCDLALRF---------GEGADEEEASMSRPFGVALLIAGYDQSGGPQLYHADPSGTFMRYDAKAIGSGSEGAQNELQDSY-NKSMTLEEAQVLALKVLKQVM 207          
BLAST of mRNA_M-pyrifera_M_contig10812.1724.1 vs. uniprot
Match: A0A1D1XX99_9ARAE (Proteasome subunit alpha type (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XX99_9ARAE)

HSP 1 Score: 184 bits (466), Expect = 1.020e-52
Identity = 105/226 (46.46%), Postives = 143/226 (63.27%), Query Frame = 1
Query:   52 YDTSVRAFSPDGSIYQVEYAVQAAQKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVCKIVDIDVHMFCAMSGLLPDGHLLVDHARAWVQEHRFEFDEAPSVEAVAAQLSRMALKFNGYDAPGEQGEGGNQGGLAMSRPVGVALLMAGMDCGGRPVLYHLDPSGAYVQWRARAIGEKSSAAEAKLEKAGPY-KGMTVRRAMATVLRVLKDVLGDDFCVDRLEMVCV 726
            YD  V  FSP+G ++QVEYA++A + G   +G+QT +G+VLAA+ R  SPLL SSS+ KI++ID H+ CAMSGL  D   ++DHAR   Q HRF +DEA  VE+V   +  +AL+F G  A GE+          MSRP GVALL+AG+D  G P L+H DPSG + Q+ A+AIG  S  A+ +LE  G Y K +T+ +A    LRVLK V+ +      +E+  V
Sbjct:   13 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTSEGVVLAAEKRVTSPLLVSSSIEKIMEIDKHLGCAMSGLTADSRTMIDHARVAAQSHRFTYDEAIKVESVTQAVCDLALRF-GESAEGEES--------IMSRPFGVALLIAGVDENG-PQLFHADPSGTFTQFDAKAIGSGSEGAQTELE--GEYHKSITLEKAETLSLRVLKQVMEEKLNNTNVELASV 226          
BLAST of mRNA_M-pyrifera_M_contig10812.1724.1 vs. uniprot
Match: A0A7S0S1S4_9CHLO (Proteasome subunit alpha type n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S1S4_9CHLO)

HSP 1 Score: 183 bits (465), Expect = 1.240e-52
Identity = 104/211 (49.29%), Postives = 138/211 (65.40%), Query Frame = 1
Query:   52 YDTSVRAFSPDGSIYQVEYAVQAAQKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVCKIVDIDVHMFCAMSGLLPDGHLLVDHARAWVQEHRFEFDEAPSVEAVAAQLSRMALKFNGYDAPGEQGEGGNQGGLAMSRPVGVALLMAGMDCGGRPVLYHLDPSGAYVQWRARAIGEKSSAAEAKLEKAGPYKGMTVRRAMATVLRVLKDVL 684
            YD  V  FSP+G I+QVEYA++A + G   IGV T +G+VLA + R  SPLL+ SS+ KI++ID HM CAMSGL  D  +LVDHARA  Q+HRF ++EA  VEA    L  +AL+F         GEG ++G  AMSRP GVALL+AG D  G P+LYH DPSG Y ++ A+AIG  +  A++ L++ G  K +T++ A    L  LK V+
Sbjct:   12 YDRGVNTFSPEGRIFQVEYAIEAIKLGSTAIGVTTPEGVVLAVEKRITSPLLEPSSIEKILEIDEHMGCAMSGLTADAKMLVDHARAETQQHRFTYNEAMPVEACTQSLCDLALRF---------GEGDDEG--AMSRPFGVALLIAGWDDQG-PLLYHTDPSGTYTKYAAKAIGSGAEGAQSTLQE-GFRKDLTLKEAEVLALSTLKQVM 209          
BLAST of mRNA_M-pyrifera_M_contig10812.1724.1 vs. uniprot
Match: A0A1X6NLH8_PORUM (Proteasome subunit alpha type n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLH8_PORUM)

HSP 1 Score: 183 bits (465), Expect = 1.360e-52
Identity = 100/225 (44.44%), Postives = 138/225 (61.33%), Query Frame = 1
Query:   52 YDTSVRAFSPDGSIYQVEYAVQAAQKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVCKIVDIDVHMFCAMSGLLPDGHLLVDHARAWVQEHRFEFDEAPSVEAVAAQLSRMALKFNGYDAPGEQGEGGNQGGLAMSRPVGVALLMAGMDCGGRPVLYHLDPSGAYVQWRARAIGEKSSAAEAKLEKAGPYKGMTVRRAMATVLRVLKDVLGDDFCVDRLEMVCV 726
            YD  V  FSP+G ++QVEYA++A + G   +G+ T +G++LA + R  SPLL  SS+ K+++ID H+  AMSGL  D   L+DH R   QEHRF +DE  SVE+    L  +AL+F      GE G   + G  AM+RP GVALL+AG+D  G P LYH DPSG YV+W A+AIG  S  A+  L++A    GMT+  A    L+ LK V+ +    + +E+  V
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGICTTEGVILAVEKRLTSPLLTPSSIEKVLEIDTHIGAAMSGLTADARTLIDHGRIVTQEHRFTYDEPLSVESTTQSLCDLALRF------GEDGR--DDGADAMARPFGVALLIAGVDDEGGPALYHTDPSGTYVKWMAKAIGAGSEGAQTALQEAWSA-GMTLAEAEGLALKTLKAVMEEKVSGENVEVAAV 223          
BLAST of mRNA_M-pyrifera_M_contig10812.1724.1 vs. uniprot
Match: UPI001C7A0D83 (proteasome component pup2 n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7A0D83)

HSP 1 Score: 183 bits (464), Expect = 1.750e-52
Identity = 99/211 (46.92%), Postives = 140/211 (66.35%), Query Frame = 1
Query:   52 YDTSVRAFSPDGSIYQVEYAVQAAQKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVCKIVDIDVHMFCAMSGLLPDGHLLVDHARAWVQEHRFEFDEAPSVEAVAAQLSRMALKFNGYDAPGEQGEGGNQGGLAMSRPVGVALLMAGMDCGGRPVLYHLDPSGAYVQWRARAIGEKSSAAEAKLEKAGPYKGMTVRRAMATVLRVLKDVL 684
            YD  V  FSP+G ++QVEYA++A + G  T+G++TDQG+VLA + R +SPL++SSS+ KI++ID H+ CAMSGL  D   ++DHAR   Q H F +DE   VE+V   +  +AL+F         GE  +     MSRP GVALL+AG+D  G P LYH DPSG +V+++A+AIG  S AA+A+L++   Y  MT++ A    +RVLK V+
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTTLGIRTDQGVVLAVEKRVQSPLIESSSIEKIMEIDRHLGCAMSGLTADARTMIDHARVTAQNHSFTYDEKIKVESVTQAVCDLALRF---------GESVHDEDAMMSRPFGVALLIAGIDEVG-PQLYHTDPSGTFVRYQAKAIGSGSEAAQAELQEKW-YSQMTLQEANILAMRVLKQVM 207          
BLAST of mRNA_M-pyrifera_M_contig10812.1724.1 vs. uniprot
Match: M7XIX9_RHOT1 (Proteasome subunit alpha type n=6 Tax=Rhodotorula TaxID=5533 RepID=M7XIX9_RHOT1)

HSP 1 Score: 182 bits (463), Expect = 2.620e-52
Identity = 98/211 (46.45%), Postives = 140/211 (66.35%), Query Frame = 1
Query:   52 YDTSVRAFSPDGSIYQVEYAVQAAQKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVCKIVDIDVHMFCAMSGLLPDGHLLVDHARAWVQEHRFEFDEAPSVEAVAAQLSRMALKFNGYDAPGEQGEGGNQGGLAMSRPVGVALLMAGMDCGGRPVLYHLDPSGAYVQWRARAIGEKSSAAEAKLEKAGPYKGMTVRRAMATVLRVLKDVL 684
            YD  V  FSP+G ++QVEYA++A + G  T+G+QT +G+VLA + R +SPLL+S SV KI++ID H+ CAMSGL  D   +V+HAR   Q H F +DE   VE+V   +S +AL+F         GEG N+   +MSRP GVALL+AG+D  G P L+H DPSG ++++ A+AIG  S  A+++L+ +   K MT+ +A    L+VLK V+
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTTVGIQTSEGVVLAVEKRTQSPLLESDSVEKIMEIDRHIGCAMSGLTADARTMVEHARVTAQNHVFTYDEPIKVESVTQSVSDLALRF---------GEGANEEDASMSRPFGVALLIAGIDHHG-PQLFHADPSGTFMRYHAKAIGSGSEGAQSELQDSYD-KSMTLAQAKVLALKVLKQVM 207          
BLAST of mRNA_M-pyrifera_M_contig10812.1724.1 vs. uniprot
Match: A0A1Q3E886_LENED (Proteasome subunit alpha type n=4 Tax=Omphalotaceae TaxID=72117 RepID=A0A1Q3E886_LENED)

HSP 1 Score: 182 bits (462), Expect = 6.660e-52
Identity = 99/211 (46.92%), Postives = 138/211 (65.40%), Query Frame = 1
Query:   52 YDTSVRAFSPDGSIYQVEYAVQAAQKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVCKIVDIDVHMFCAMSGLLPDGHLLVDHARAWVQEHRFEFDEAPSVEAVAAQLSRMALKFNGYDAPGEQGEGGNQGGLAMSRPVGVALLMAGMDCGGRPVLYHLDPSGAYVQWRARAIGEKSSAAEAKLEKAGPYKGMTVRRAMATVLRVLKDVL 684
            YD  V  FSP+G ++QVEYA++A + G  T+GV+TD+G+VL  + R +SPL++SSS+ KI++ID H+ CAMSGL  D   ++DHAR   Q H F +DE   VE+V   +  +AL+F         GE  +     MSRP GVALL+AG+D  G P LYH DPSG +V+++A+AIG  S AA+A+L+     K MT+R A    LR+LK V+
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTTVGVRTDEGVVLGVEKRVQSPLIESSSIEKIMEIDAHLGCAMSGLTADARTMIDHARVTAQNHSFTYDEKIKVESVTQAVCDLALRF---------GESVHDEDAMMSRPFGVALLIAGIDELG-PQLYHTDPSGTFVRYQAKAIGSGSEAAQAELQDKWHSK-MTLREAQLLTLRILKQVM 207          
BLAST of mRNA_M-pyrifera_M_contig10812.1724.1 vs. uniprot
Match: E9HGR7_DAPPU (Proteasome subunit alpha type n=8 Tax=Mandibulata TaxID=197563 RepID=E9HGR7_DAPPU)

HSP 1 Score: 181 bits (458), Expect = 1.380e-51
Identity = 100/225 (44.44%), Postives = 144/225 (64.00%), Query Frame = 1
Query:   52 YDTSVRAFSPDGSIYQVEYAVQAAQKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVCKIVDIDVHMFCAMSGLLPDGHLLVDHARAWVQEHRFEFDEAPSVEAVAAQLSRMALKFNGYDAPGEQGEGGNQGGLAMSRPVGVALLMAGMDCGGRPVLYHLDPSGAYVQWRARAIGEKSSAAEAKLEKAGPYKGMTVRRAMATVLRVLKDVLGDDFCVDRLEMVCV 726
            YD  V  FSP+G ++QVEYA++A + G   IG+QT +G+VLA + R  SPL++ +++ KIV+ID H+ CA+SGL+ D   +VD AR   Q H F +DE  SVE+VA  +S +A++F      G+  + GN    AMSRP GVA+L AG+D  G P L+H+DPSG YVQ+ A+AIG  S  A+  L++A   K MT++ AM   L +LK V+ +      +E+  V
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVVLAVEKRITSPLMEPTTIEKIVEIDKHIGCAVSGLMADSRTMVDRARVEAQNHWFTYDEKMSVESVAQAVSNLAIQF------GDSDDDGN----AMSRPFGVAILFAGIDEKG-PQLFHMDPSGTYVQYDAKAIGSGSEGAQQSLQEAY-NKSMTLKSAMKAALTILKQVMEEKLSSTNVEVAAV 220          
BLAST of mRNA_M-pyrifera_M_contig10812.1724.1 vs. uniprot
Match: A0A5J4Z0C5_PORPP (Proteasome subunit alpha type n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0C5_PORPP)

HSP 1 Score: 180 bits (457), Expect = 2.390e-51
Identity = 99/211 (46.92%), Postives = 135/211 (63.98%), Query Frame = 1
Query:   52 YDTSVRAFSPDGSIYQVEYAVQAAQKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVCKIVDIDVHMFCAMSGLLPDGHLLVDHARAWVQEHRFEFDEAPSVEAVAAQLSRMALKFNGYDAPGEQGEGGNQGGLAMSRPVGVALLMAGMDCGGRPVLYHLDPSGAYVQWRARAIGEKSSAAEAKLEKAGPYKGMTVRRAMATVLRVLKDVL 684
            YD  V  FSP+G ++QVEYA++A + G   IG++T+QG+VLA + R  SPLL+  SV K+V ID  + CAMSGL  D   L+DHAR   Q HRF +DE   +++ A  +  +AL+F      GE G+  +    AMSRP GVALL+AG+D GG+P L H DPSG YV+W A+AIG  S  A+  L++A   K +T++ A    LR LK V+
Sbjct:   14 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTEQGVVLAVEKRLTSPLLEPRSVEKLVVIDSQIGCAMSGLTADARTLIDHARVETQSHRFTYDEPMQIDSCAQAICDLALQF------GEDGKEED----AMSRPFGVALLIAGIDVGGKPSLIHTDPSGTYVKWDAKAIGAGSEGAQTALQEAFS-KTLTLQEAEVLALRTLKQVM 213          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10812.1724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBM5_ECTSI1.190e-12370.79Similar to 20S proteasome alpha5 subunit n=2 Tax=E... [more]
A0A1Y2BW89_9BASI4.710e-5346.92Proteasome subunit alpha type (Fragment) n=1 Tax=L... [more]
A0A1D1XX99_9ARAE1.020e-5246.46Proteasome subunit alpha type (Fragment) n=1 Tax=A... [more]
A0A7S0S1S4_9CHLO1.240e-5249.29Proteasome subunit alpha type n=1 Tax=Chlamydomona... [more]
A0A1X6NLH8_PORUM1.360e-5244.44Proteasome subunit alpha type n=1 Tax=Porphyra umb... [more]
UPI001C7A0D831.750e-5246.92proteasome component pup2 n=1 Tax=Marasmius oreade... [more]
M7XIX9_RHOT12.620e-5246.45Proteasome subunit alpha type n=6 Tax=Rhodotorula ... [more]
A0A1Q3E886_LENED6.660e-5246.92Proteasome subunit alpha type n=4 Tax=Omphalotacea... [more]
E9HGR7_DAPPU1.380e-5144.44Proteasome subunit alpha type n=8 Tax=Mandibulata ... [more]
A0A5J4Z0C5_PORPP2.390e-5146.92Proteasome subunit alpha type n=1 Tax=Porphyridium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10812contigM-pyrifera_M_contig10812:459..3386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.7
Seed ortholog evalue1.2e-101
Seed eggNOG ortholog2880.D8LBM5
Preferred namePSMA5
KEGG koko:K02729,ko:K12388
KEGG TC9.A.63.1.3
KEGG Pathwayko03050,ko04142,ko04722,ko04979,map03050,map04142,map04722,map04979
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0030141,GO:0030163,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0060205,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904813,GO:1905368,GO:1905369
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0176@2759
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-27_003410.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Exons4
Model size1080
Cds size1080
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10812.1724.1prot_M-pyrifera_M_contig10812.1724.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10812 459..3386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.94294-CDS-M-pyrifera_M_contig10812:458..9971622815590.94294-CDS-M-pyrifera_M_contig10812:458..997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10812 459..997 -
1692277477.7673662-CDS-M-pyrifera_M_contig10812:458..9971692277477.7673662-CDS-M-pyrifera_M_contig10812:458..997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10812 459..997 -
1622815590.9531994-CDS-M-pyrifera_M_contig10812:1703..19361622815590.9531994-CDS-M-pyrifera_M_contig10812:1703..1936Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10812 1704..1936 -
1692277477.7781122-CDS-M-pyrifera_M_contig10812:1703..19361692277477.7781122-CDS-M-pyrifera_M_contig10812:1703..1936Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10812 1704..1936 -
1622815590.9661558-CDS-M-pyrifera_M_contig10812:2218..24271622815590.9661558-CDS-M-pyrifera_M_contig10812:2218..2427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10812 2219..2427 -
1692277477.7862134-CDS-M-pyrifera_M_contig10812:2218..24271692277477.7862134-CDS-M-pyrifera_M_contig10812:2218..2427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10812 2219..2427 -
1622815590.9808207-CDS-M-pyrifera_M_contig10812:3287..33861622815590.9808207-CDS-M-pyrifera_M_contig10812:3287..3386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10812 3288..3386 -
1692277477.7953017-CDS-M-pyrifera_M_contig10812:3287..33861692277477.7953017-CDS-M-pyrifera_M_contig10812:3287..3386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10812 3288..3386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10812.1724.1

>prot_M-pyrifera_M_contig10812.1724.1 ID=prot_M-pyrifera_M_contig10812.1724.1|Name=mRNA_M-pyrifera_M_contig10812.1724.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=360bp
MYSHNRRRKAPVREKKAYDTSVRAFSPDGSIYQVEYAVQAAQKGGLTIGV
QTDQGLVLAAQGRRRSPLLKSSSVCKIVDIDVHMFCAMSGLLPDGHLLVD
HARAWVQEHRFEFDEAPSVEAVAAQLSRMALKFNGYDAPGEQGEGGNQGG
LAMSRPVGVALLMAGMDCGGRPVLYHLDPSGAYVQWRARAIGEKSSAAEA
KLEKAGPYKGMTVRRAMATVLRVLKDVLGDDFCVDRLEMVCVDNLREDDD
EEELDESIQGPGRKHRRNISRSADGQARGPPTMSSQDNGRSSSSSSSSSR
SSSSRSSISRSSGDAGASDRESSSSGKGAAKNGSPGASPPMPRHCGLFRR
VSKNEMEKLL
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mRNA from alignment at M-pyrifera_M_contig10812:459..3386-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10812.1724.1 ID=mRNA_M-pyrifera_M_contig10812.1724.1|Name=mRNA_M-pyrifera_M_contig10812.1724.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2928bp|location=Sequence derived from alignment at M-pyrifera_M_contig10812:459..3386- (Macrocystis pyrifera P11B4 male)
ATGTATTCGCACAACAGACGCCGAAAAGCCCCCGTCCGCGAGAAGAAGGC GTACGACACAAGCGTCAGAGCATTTTCTCCTGATGGAAGCATCTATCAGG TATCGTTGATCAAGCCGGCACGACCCACCTCTTTTCTGATACTATTCGTG GGAAACAATAGGACAGCACTGTTTTACGAGTGCCATCCGCGCTACGTACG TACCCCCCCAAGGGAGGCCATACGACTACGGCCATGCATAATAATGAGTA CCCCCCCCCCCCGCCCAAGGGAGCTGTCGAATCTATTGCACCATCGACAA CCTGTGCACTCTGTACACAGTAGTGCAGCAATACTGGCATCAAAATATTC TCGATTGTGTCTACCGAGTACCATGCGTAAACGTGTCTATAGATATACGT GCCAGGTATACTAGGGCTAGATCGTTGTTACCGCAGATGCCCTACTCACC CGCCTCGGTTTTCTTGGGTGTGTGCCATTCCTGTCTTGGCTGGTAGGCTG TTGGGTAGAAGGGATGACCTGCAGTACGTAGTGGTCCCTCTATAGTGCAG GCTGCTCGCTATAGTGTCTGTGGAATCGTTTGGCACAGATGGGATTCACC AGTGTGGTGTGCGGAGTAATTAGTGCCGGTTGGTTGCCGCTACGAGTATA TAGTGCCGGTATTGTTGGCTCGCGCCTACCGGCACTATAGAGGAACCACT ACTGTACTCTCTCTTCTAACCAACAAAACAACAGAGGCTCGCCCCGCGTC CGGATTGAAATCTCGAAGCTGTGCATCCACGACCCACGACTTCAACCTTG CGATATGCTTGACGCATTTCGCTTGCATACACCACACTCGCTACCTATGT ATCATAGCCGATATTTTACACGATCTACGCAAGACGTGCATCTATACTCG TTTATGATACACAACGTCGGATTAATCTAAAACCAACCGACGCATCCGAC GCACACCAGGTAGAGTACGCTGTGCAAGCGGCGCAAAAGGGAGGCCTCAC GATCGGTGTGCAGACGGACCAAGGACTGGTGTTGGCGGCGCAGGGTCGGC GGCGCTCGCCACTGCTCAAGAGCTCTTCCGTTTGCAAGATCGTCGACATC GATGTCCACATGTTCTGCGCTATGTCGGGATTGCTTCCGGACGGCCATTT ATTGGTCGACCACGCCCGGTGAGTCCGATTAGTACAGCTACAGTAATTGT ACTGCAGTAGTACGTACTACAGTAGCCACGTTTAGAGTGCCGTTTAACGA TACAGCATGCTAGCTGTCCCAGCACAGCGACATCGATTCTCGAGGTGCGT AGACTTTTCGTTACCACCAGCCGTAGTAGCAGCAGTCCCATAATGTATAG TACGACCCTCTCTATATTAATTGCCGTAATGATGCGGTGCGGATTGATTG CCCAAGCCAATTCCAACAACCGGTTGTGTTTTTTCCCGCCATCCGCGCAG CGCGTGGGTGCAAGAGCACCGCTTCGAGTTCGACGAAGCTCCAAGCGTGG AGGCAGTCGCGGCGCAGCTGAGCCGAATGGCTCTCAAGTTTAACGGCTAC GACGCGCCCGGGGAACAGGGAGAAGGCGGGAATCAGGGTGGTTTGGCGAT GTCTAGACCGGTGGGCGTTGCGCTGCTAATGGCAGGAATGGACTGCGGAG GTCGTCCGGTGCTGTACCACCTCGACCCGTCTGGTGAGGCCTGGGTCATG GCGTTCAAAACGATCCAGGGGATACTAGAGTAAGAACACTTCGCTTCGCG CGGAGTTAAGGTATAAAATTGTGTATGTACGTAGTACGTATAAGATATGT AGGCTAGCGATCCAGGCATGTCATAGCGCCCGCAGGAGTGGTCCACGTGT TTTGCTGTTGTTCCCTCCTTTTTCGCGAACAAAAAAATCGTCTATCTGGC TATCTGGTATTGTTGCGGTTGTTGTTGTTATTACACTATTAATAACTCAT CGCCACAATGCAGTCTGTGGTCACAGGACAGGCTCCTGGAGTGAAATATT TCGTCCGAGGAGGGAAAAAGAAAAGAAAAAGTATTTGGTGGGCTAGCGCC GAGTTGTGTGGCCGGATCACCAAGTATGTCTCTCGTGGATGTTGATCTTC CTCTTGTTGTGTCTTGTGGCAGCTCCGAAATTCTTCACGTATACTCGTAT ACGTATCTGTAGGTGTTTTTTTTTTCGTGTTCCGCGCGGCGGCCAATGTA TGGAAGAAGCCGAAACGTTACACGCAGCTTGCAAAGTTGAATTCCGGCGA AACTCTTAGTCCCAATCCTGTCTGAGGTGTTTTTTTTAGTACATCAAATG AAACAACGAAAGTGAGGCCGTGAGCCGTAAGCTTTCTGACTGGACCTGAC TCGGGCCCCCCATTCCCCCATCCATGCGTCCGGCCGCAGGAGCGTACGTC CAGTGGAGGGCAAGAGCGATCGGCGAAAAGAGCTCCGCCGCGGAAGCCAA GCTCGAAAAAGCCGGCCCCTATAAAGGCATGACCGTACGACGGGCCATGG CAACAGTGCTCAGAGTGCTCAAGGACGTCCTCGGAGACGACTTTTGTGTT GACAGGCTCGAAATGGTCTGCGTGGACAACCTTCGTGAAGACGACGACGA GGAGGAACTCGATGAGTCGATCCAAGGCCCGGGGCGGAAGCACCGACGGA ATATCTCGCGTTCCGCCGATGGGCAGGCACGCGGCCCGCCGACGATGTCG TCACAGGATAACGGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAG CAGCAGTAGTAGGAGTAGTATAAGTAGGAGTAGTGGTGATGCTGGCGCAA GCGATCGAGAAAGCAGCAGTAGTGGGAAGGGCGCGGCAAAGAACGGCTCG CCTGGGGCGAGTCCTCCGATGCCTCGGCATTGTGGACTGTTTCGAAGAGT TTCCAAGAACGAGATGGAAAAGTTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10812:459..3386-

>mRNA_M-pyrifera_M_contig10812.1724.1 ID=mRNA_M-pyrifera_M_contig10812.1724.1|Name=mRNA_M-pyrifera_M_contig10812.1724.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2160bp|location=Sequence derived from alignment at M-pyrifera_M_contig10812:459..3386- (Macrocystis pyrifera P11B4 male)
ATGTATTCGCACAACAGACGCCGAAAAGCCCCCGTCCGCGAGAAGAAGGC
GTACGACACAAGCGTCAGAGCATTTTCTCCTGATGGAAGCATCTATCAGA
TGTATTCGCACAACAGACGCCGAAAAGCCCCCGTCCGCGAGAAGAAGGCG
TACGACACAAGCGTCAGAGCATTTTCTCCTGATGGAAGCATCTATCAGGT
AGAGTACGCTGTGCAAGCGGCGCAAAAGGGAGGCCTCACGATCGGTGTGC
AGACGGACCAAGGACTGGTGTTGGCGGCGCAGGGTCGGCGGCGCTCGCCA
CTGCTCAAGAGCTCTTCCGTTTGCAAGATCGTCGACATCGATGTCCACAT
GTTCTGCGCTATGTCGGGATTGCTTCCGGACGGCCATTTATTGGTCGACC
ACGCCCGGTAGAGTACGCTGTGCAAGCGGCGCAAAAGGGAGGCCTCACGA
TCGGTGTGCAGACGGACCAAGGACTGGTGTTGGCGGCGCAGGGTCGGCGG
CGCTCGCCACTGCTCAAGAGCTCTTCCGTTTGCAAGATCGTCGACATCGA
TGTCCACATGTTCTGCGCTATGTCGGGATTGCTTCCGGACGGCCATTTAT
TGGTCGACCACGCCCGCGCGTGGGTGCAAGAGCACCGCTTCGAGTTCGAC
GAAGCTCCAAGCGTGGAGGCAGTCGCGGCGCAGCTGAGCCGAATGGCTCT
CAAGTTTAACGGCTACGACGCGCCCGGGGAACAGGGAGAAGGCGGGAATC
AGGGTGGTTTGGCGATGTCTAGACCGGTGGGCGTTGCGCTGCTAATGGCA
GGAATGGACTGCGGAGGTCGTCCGGTGCTGTACCACCTCGACCCGTCTGC
GCGTGGGTGCAAGAGCACCGCTTCGAGTTCGACGAAGCTCCAAGCGTGGA
GGCAGTCGCGGCGCAGCTGAGCCGAATGGCTCTCAAGTTTAACGGCTACG
ACGCGCCCGGGGAACAGGGAGAAGGCGGGAATCAGGGTGGTTTGGCGATG
TCTAGACCGGTGGGCGTTGCGCTGCTAATGGCAGGAATGGACTGCGGAGG
TCGTCCGGTGCTGTACCACCTCGACCCGTCTGGAGCGTACGTCCAGTGGA
GGGCAAGAGCGATCGGCGAAAAGAGCTCCGCCGCGGAAGCCAAGCTCGAA
AAAGCCGGCCCCTATAAAGGCATGACCGTACGACGGGCCATGGCAACAGT
GCTCAGAGTGCTCAAGGACGTCCTCGGAGACGACTTTTGTGTTGACAGGC
TCGAAATGGTCTGCGTGGACAACCTTCGTGAAGACGACGACGAGGAGGAA
CTCGATGAGTCGATCCAAGGCCCGGGGCGGAAGCACCGACGGAATATCTC
GCGTTCCGCCGATGGGCAGGCACGCGGCCCGCCGACGATGTCGTCACAGG
ATAACGGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGT
AGTAGGAGTAGTATAAGTAGGAGTAGTGGTGATGCTGGCGCAAGCGATCG
AGAAAGCAGCAGTAGTGGGAAGGGCGCGGCAAAGAACGGCTCGCCTGGGG
CGAGTCCTCCGATGCCTCGGCATTGTGGACTGTTTCGAAGAGTTTCCAAG
AACGAGATGGAAAAGTTGCTCGAGCGTACGTCCAGTGGAGGGCAAGAGCG
ATCGGCGAAAAGAGCTCCGCCGCGGAAGCCAAGCTCGAAAAAGCCGGCCC
CTATAAAGGCATGACCGTACGACGGGCCATGGCAACAGTGCTCAGAGTGC
TCAAGGACGTCCTCGGAGACGACTTTTGTGTTGACAGGCTCGAAATGGTC
TGCGTGGACAACCTTCGTGAAGACGACGACGAGGAGGAACTCGATGAGTC
GATCCAAGGCCCGGGGCGGAAGCACCGACGGAATATCTCGCGTTCCGCCG
ATGGGCAGGCACGCGGCCCGCCGACGATGTCGTCACAGGATAACGGCCGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAGTAGTAGGAGTAG
TATAAGTAGGAGTAGTGGTGATGCTGGCGCAAGCGATCGAGAAAGCAGCA
GTAGTGGGAAGGGCGCGGCAAAGAACGGCTCGCCTGGGGCGAGTCCTCCG
ATGCCTCGGCATTGTGGACTGTTTCGAAGAGTTTCCAAGAACGAGATGGA
AAAGTTGCTC
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