mRNA_M-pyrifera_M_contig108047.1715.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108047.1715.1
Unique NamemRNA_M-pyrifera_M_contig108047.1715.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig108047.1715.1 vs. uniprot
Match: UPI001911C0CB (hypothetical protein n=1 Tax=Paraburkholderia domus TaxID=2793075 RepID=UPI001911C0CB)

HSP 1 Score: 65.9 bits (159), Expect = 3.270e-10
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    4 LHEVGVHFGMRDMLGAKLFDDVVAAVEKAADGKLTSAFAQAARAARAAVPEGTPASQVAEETVAWLVTDAANHKLHWVKRIIAKIRAFLVKHGFTKALSTDALAELARG 330
            LHE+GVH+GMR MLGA+  D ++A  ++ AD    +A A     ARA VP  T A+ V EE ++ LV D A+ KL  V R  A+++AF+ + G   AL    +  LA G
Sbjct:  428 LHEIGVHYGMRRMLGARA-DRLIAQAKRLADSGDPAAVA-----ARAKVPASTHAANVDEEILSHLVGDLASQKLGIVMRARAQLKAFIFRLGADVALGAADMLMLAEG 530
[Close]
BLAST of mRNA_M-pyrifera_M_contig108047.1715.1 vs. uniprot
Match: A0A350PLK9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A350PLK9_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 2.920e-5
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    4 LHEVGVHFGMRDMLGAKLFDDVVAAVE--KAADGKLTSAFAQAARAARAAVPEGTPASQVAEETVAWLVTDAANHKLHWVKRIIAKIRAFLVKHG 282
            LHE+GVH+G++ MLG K ++D+V +++  K AD ++++AF    RA    + E +PA    EE +  +   A N+ L+  + I+A I+AFL + G
Sbjct:   60 LHEIGVHYGLKKMLGVKKYNDLVTSLKNKKNADKEISAAFDYVTRAYPELI-ENSPA--FIEEVIGRISESAPNNSLY--QTIVANIKAFLRRLG 149
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108047.1715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001911C0CB3.270e-1042.20hypothetical protein n=1 Tax=Paraburkholderia domu... [more]
A0A350PLK9_9BACT2.920e-536.84Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108047contigM-pyrifera_M_contig108047:3..338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.2871318-UTR-M-pyrifera_M_contig108047:2..321622815590.2871318-UTR-M-pyrifera_M_contig108047:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108047 3..32 +
1692277477.3876753-UTR-M-pyrifera_M_contig108047:2..321692277477.3876753-UTR-M-pyrifera_M_contig108047:2..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108047 3..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.3052697-CDS-M-pyrifera_M_contig108047:32..3381622815590.3052697-CDS-M-pyrifera_M_contig108047:32..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108047 33..338 +
1692277477.3963897-CDS-M-pyrifera_M_contig108047:32..3381692277477.3963897-CDS-M-pyrifera_M_contig108047:32..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108047 33..338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108047.1715.1prot_M-pyrifera_M_contig108047.1715.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108047 33..338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108047.1715.1

>prot_M-pyrifera_M_contig108047.1715.1 ID=prot_M-pyrifera_M_contig108047.1715.1|Name=mRNA_M-pyrifera_M_contig108047.1715.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MRDMLGAKLFDDVVAAVEKAADGKLTSAFAQAARAARAAVPEGTPASQVA
EETVAWLVTDAANHKLHWVKRIIAKIRAFLVKHGFTKALSTDALAELARG
AA
back to top

mRNA from alignment at M-pyrifera_M_contig108047:3..338+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108047.1715.1 ID=mRNA_M-pyrifera_M_contig108047.1715.1|Name=mRNA_M-pyrifera_M_contig108047.1715.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig108047:3..338+ (Macrocystis pyrifera P11B4 male)
TTCCTGCACGAAGTCGGCGTGCATTTCGGCATGCGTGACATGCTCGGCGC
CAAACTGTTCGATGATGTCGTCGCTGCGGTTGAGAAGGCGGCAGACGGGA
AACTGACCTCTGCCTTTGCGCAAGCCGCGCGCGCTGCTCGAGCCGCGGTC
CCTGAAGGCACCCCGGCATCTCAGGTCGCTGAAGAAACCGTGGCGTGGCT
CGTGACGGATGCGGCGAATCATAAACTGCACTGGGTGAAGCGGATCATCG
CCAAGATCCGAGCGTTCCTCGTGAAACACGGGTTCACCAAAGCGCTGAGC
ACGGATGCGCTGGCGGAACTGGCTCGTGGTGCCGCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108047:3..338+

>mRNA_M-pyrifera_M_contig108047.1715.1 ID=mRNA_M-pyrifera_M_contig108047.1715.1|Name=mRNA_M-pyrifera_M_contig108047.1715.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig108047:3..338+ (Macrocystis pyrifera P11B4 male)
ATGCGTGACATGCTCGGCGCCAAACTGTTCGATGATGTCGTCGCTGCGGT
TGAGAAGGCGGCAGACGGGAAACTGACCTCTGCCTTTGCGCAAGCCGCGC
GCGCTGCTCGAGCCGCGGTCCCTGAAGGCACCCCGGCATCTCAGGTCGCT
GAAGAAACCGTGGCGTGGCTCGTGACGGATGCGGCGAATCATAAACTGCA
CTGGGTGAAGCGGATCATCGCCAAGATCCGAGCGTTCCTCGTGAAACACG
GGTTCACCAAAGCGCTGAGCACGGATGCGCTGGCGGAACTGGCTCGTGGT
GCCGCAATGCGTGACATGCTCGGCGCCAAACTGTTCGATGATGTCGTCGC
TGCGGTTGAGAAGGCGGCAGACGGGAAACTGACCTCTGCCTTTGCGCAAG
CCGCGCGCGCTGCTCGAGCCGCGGTCCCTGAAGGCACCCCGGCATCTCAG
GTCGCTGAAGAAACCGTGGCGTGGCTCGTGACGGATGCGGCGAATCATAA
ACTGCACTGGGTGAAGCGGATCATCGCCAAGATCCGAGCGTTCCTCGTGA
AACACGGGTTCACCAAAGCGCTGAGCACGGATGCGCTGGCGGAACTGGCT
CGTGGTGCCGCA
back to top