mRNA_M-pyrifera_M_contig108044.1712.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108044.1712.1
Unique NamemRNA_M-pyrifera_M_contig108044.1712.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108044.1712.1 vs. uniprot
Match: A0A7Y5F8L5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5F8L5_9BACT)

HSP 1 Score: 161 bits (407), Expect = 7.580e-48
Identity = 80/146 (54.79%), Postives = 114/146 (78.08%), Query Frame = 1
Query:   10 VLVAAYFA--GCQSGGLPVDIPGLSGPRVSDEEQIVRLLDDVAKGMESRKIFRVLANVSQNYQDTEGRDYDGIQQYLRQVFRDYRFIEVTRARPSIIVKGDRARAMETFGTRATPFDESEHRPIDFDGQVLVELVKQDNAWKIIEW 441
            +LVAA  +  GC +  +PV+IPG++    SDEEQIV +L+DV +GM+SR+I++VLA+VS+ Y+D EGRDY  I++YL ++FR Y+ I++TR RP +IV+GDRARA+ETFGTRA PF+ +E+RPI+  GQ+ + L K DN W I+EW
Sbjct:   19 LLVAAALSPRGCINR-IPVEIPGVTTQGPSDEEQIVSVLEDVHRGMQSRRIYKVLAHVSKTYRDDEGRDYAAIERYLTELFRGYKLIQITRVRPKVIVQGDRARAVETFGTRAEPFNPNENRPIELRGQMNIYLEKIDNKWMIVEW 163          
BLAST of mRNA_M-pyrifera_M_contig108044.1712.1 vs. uniprot
Match: A0A7V2Y0E4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y0E4_9BACT)

HSP 1 Score: 160 bits (405), Expect = 1.390e-47
Identity = 84/153 (54.90%), Postives = 105/153 (68.63%), Query Frame = 1
Query:    4 AMVLVAAYFAGCQSGGLPVDIPGL------SGPRVSDEEQIVRLLDDVAKGMESRKIFRVLANVSQNYQDTEGRDYDGIQQYLRQVFRDYRFIEVTRARPSIIVK-GDRARAMETFGTRATPFDESEHRPIDFDGQVLVELVKQDNAWKIIEW 441
            A+   AA+ AGCQS  LP  IPGL      SG R+SDEEQI  ++DDVA+GM+SR+IF+VLA+VS+ Y D EGRDY  +Q+YL ++FR YR I VTR  P I ++ G RA+A+ETFGT A P D     PI   GQV+V L K D  WKI+EW
Sbjct:    8 ALACAAAFSAGCQSADLPARIPGLQKIGEASGLRLSDEEQIATVMDDVAQGMQSRRIFKVLAHVSRGYHDAEGRDYAALQEYLNEIFRKYRTIRVTRVVPRITIEAGVRAKAVETFGTVAEPVDPGAEPPIHLQGQVVVYLTKSDGEWKIVEW 160          
BLAST of mRNA_M-pyrifera_M_contig108044.1712.1 vs. uniprot
Match: A0A7C3ANG2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3ANG2_9BACT)

HSP 1 Score: 139 bits (350), Expect = 1.940e-39
Identity = 68/146 (46.58%), Postives = 99/146 (67.81%), Query Frame = 1
Query:    7 MVLVAAYFAGCQSGGLPVDIPGLSGPRVSDEEQIVRLLDDVAKGMESRKIFRVLANVSQNYQDTEGRDYDGIQQYLRQVFRDYRFIEVTRARPSIIVKGDRARAMETFGTRATPFDESEHRPIDFDGQVLVELVKQDNAWKIIEWS 444
            ++ +  +F GC    + +D+P +    +SDEE+I  +L+DV  GMESR+I++VLA+VS  Y+D EGRDY  +Q+YL ++F++Y  +++TR RP I V GDRARA+ETFGT A P D     P++  GQV V   +   AWKI+EWS
Sbjct:    2 LLFIPVFFGGC-GDRVRLDVPLMPRESLSDEEKIAFILNDVWLGMESRRIYKVLAHVSPGYRDKEGRDYAAVQEYLSEIFKEYSDVKITRMRPLIAVHGDRARALETFGTIARPKDPRRAAPLNLQGQVYVYFERVGGAWKIVEWS 146          
BLAST of mRNA_M-pyrifera_M_contig108044.1712.1 vs. uniprot
Match: A0A7C1CLH6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1CLH6_9BACT)

HSP 1 Score: 129 bits (324), Expect = 2.140e-35
Identity = 61/137 (44.53%), Postives = 100/137 (72.99%), Query Frame = 1
Query:   31 AGCQSGGLPVDIPGLSGPRVSDEEQIVRLLDDVAKGMESRKIFRVLANVSQNYQDTEGRDYDGIQQYLRQVFRDYRFIEVTRARPSIIVKGDRARAMETFGTRATPFDESEHRPIDFDGQVLVELVKQDNAWKIIEW 441
            AGCQ+G + VD+  ++G ++SDEE+I  +L+DV +GME R+I++VLA+VS++Y+D EGRDY+ +++ L  + R+YR I++TR  P I V+GDRAR ++TFG  A      E+ P++  GQV++ + +  + W+I+EW
Sbjct:   18 AGCQTG-MSVDLGRITGSKLSDEEKIALVLEDVQRGMEGRRIYQVLAHVSRSYKDREGRDYEKLREDLNTLLRNYRAIKITRTPPRIRVQGDRARVIDTFGAIAESASPIEYPPMNLQGQVIIMMERFGDTWQIVEW 153          
BLAST of mRNA_M-pyrifera_M_contig108044.1712.1 vs. uniprot
Match: A0A1V5YSS7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5YSS7_9BACT)

HSP 1 Score: 125 bits (315), Expect = 4.910e-34
Identity = 60/147 (40.82%), Postives = 99/147 (67.35%), Query Frame = 1
Query:    1 FAMVLVAAYFAGCQSGGLPVDIPGLSGPRVSDEEQIVRLLDDVAKGMESRKIFRVLANVSQNYQDTEGRDYDGIQQYLRQVFRDYRFIEVTRARPSIIVKGDRARAMETFGTRATPFDESEHRPIDFDGQVLVELVKQDNAWKIIEW 441
            F+++L      GCQ+   P D+  L  PR+SDEE+I  +L+DV +GME++++++VL++VS+ Y+D +GRD+  +Q+ L  + ++YR I +TR  P I V+G+RAR  +TFGT A P    +  P++  GQV++ + K  + W+IIEW
Sbjct:    8 FSLLLCLIGLYGCQTQA-PFDLGRLVNPRMSDEEKITMILEDVQRGMEAQRVYQVLSHVSRAYKDRDGRDFSALQEDLNTLMKNYRNIRITRTPPRIEVRGNRARVTDTFGTIAEPVRADDFPPVNLQGQVILMMEKTGDTWQIIEW 153          
BLAST of mRNA_M-pyrifera_M_contig108044.1712.1 vs. uniprot
Match: A0A7C8AM38_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C8AM38_9BACT)

HSP 1 Score: 123 bits (308), Expect = 5.460e-33
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = 1
Query:    1 FAMVLVAAYFAGCQSGGLPVDIPGLSGPRVSDEEQIVRLLDDVAKGMESRKIFRVLANVSQNYQDTEGRDYDGIQQYLRQVFRDYRFIEVTRARPSIIVKGDRARAMETFGTRATPFDESEHRPIDFDGQVLVELVKQDNAWKIIEWSA 447
            FA+VLVA    GC S  L   +  + G ++SDEEQI  +LDDV +G ESR+I++VLA++S  Y D + RDY   +  L+++F  YR I +TR RP IIV+G RARA+ETFG  A P ++    P+  +GQ  V   K ++ W+II W +
Sbjct:    9 FALVLVA--LVGCDSP-LQSALQEIGGAKMSDEEQIAVVLDDVRRGAESRRIYKVLAHLSPGYLDAQMRDYQAARDELQRLFSSYREIRITRVRPRIIVQGTRARAIETFGIVAEPVNQEVGLPVSINGQAEVHFEKTNDVWQIIGWKS 154          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108044.1712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7Y5F8L5_9BACT7.580e-4854.79Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7V2Y0E4_9BACT1.390e-4754.90Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C3ANG2_9BACT1.940e-3946.58Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C1CLH6_9BACT2.140e-3544.53Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1V5YSS7_9BACT4.910e-3440.82Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C8AM38_9BACT5.460e-3344.97Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108044contigM-pyrifera_M_contig108044:118..573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size450
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.136136-UTR-M-pyrifera_M_contig108044:117..1231622815590.136136-UTR-M-pyrifera_M_contig108044:117..123Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108044 118..123 +
1692277477.3425782-UTR-M-pyrifera_M_contig108044:117..1231692277477.3425782-UTR-M-pyrifera_M_contig108044:117..123Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108044 118..123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.1501045-CDS-M-pyrifera_M_contig108044:123..5731622815590.1501045-CDS-M-pyrifera_M_contig108044:123..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108044 124..573 +
1692277477.3504753-CDS-M-pyrifera_M_contig108044:123..5731692277477.3504753-CDS-M-pyrifera_M_contig108044:123..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108044 124..573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108044.1712.1prot_M-pyrifera_M_contig108044.1712.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108044 124..573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108044.1712.1

>prot_M-pyrifera_M_contig108044.1712.1 ID=prot_M-pyrifera_M_contig108044.1712.1|Name=mRNA_M-pyrifera_M_contig108044.1712.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MVLVAAYFAGCQSGGLPVDIPGLSGPRVSDEEQIVRLLDDVAKGMESRKI
FRVLANVSQNYQDTEGRDYDGIQQYLRQVFRDYRFIEVTRARPSIIVKGD
RARAMETFGTRATPFDESEHRPIDFDGQVLVELVKQDNAWKIIEWSAAG*
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mRNA from alignment at M-pyrifera_M_contig108044:118..573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108044.1712.1 ID=mRNA_M-pyrifera_M_contig108044.1712.1|Name=mRNA_M-pyrifera_M_contig108044.1712.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig108044:118..573+ (Macrocystis pyrifera P11B4 male)
TTCGCGATGGTGTTGGTTGCCGCGTACTTCGCGGGATGCCAATCCGGAGG TTTACCGGTTGACATCCCCGGATTGTCAGGACCACGAGTATCGGACGAAG AACAGATTGTTCGTCTGTTAGACGACGTTGCGAAAGGAATGGAGTCGCGC AAGATTTTTCGCGTCCTCGCCAACGTTTCACAGAATTATCAGGATACTGA GGGACGCGATTACGATGGAATACAGCAGTATCTACGACAAGTATTTCGAG ACTATCGGTTTATCGAAGTCACACGAGCGAGGCCGAGTATCATTGTGAAG GGCGATCGCGCGCGTGCGATGGAAACGTTTGGGACGCGCGCCACGCCCTT CGACGAATCCGAGCACCGACCCATCGATTTCGATGGGCAAGTCCTCGTAG AACTCGTCAAGCAAGATAACGCATGGAAAATCATAGAATGGAGCGCCGCA GGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108044:118..573+

>mRNA_M-pyrifera_M_contig108044.1712.1 ID=mRNA_M-pyrifera_M_contig108044.1712.1|Name=mRNA_M-pyrifera_M_contig108044.1712.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig108044:118..573+ (Macrocystis pyrifera P11B4 male)
ATGGTGTTGGTTGCCGCGTACTTCGCGGGATGCCAATCCGGAGGTTTACC
GGTTGACATCCCCGGATTGTCAGGACCACGAGTATCGGACGAAGAACAGA
TTGTTCGTCTGTTAGACGACGTTGCGAAAGGAATGGAGTCGCGCAAGATT
TTTCGCGTCCTCGCCAACGTTTCACAGAATTATCAGGATACTGAGGGACG
CGATTACGATGGAATACAGCAGTATCTACGACAAGTATTTCGAGACTATC
GGTTTATCGAAGTCACACGAGCGAGGCCGAGTATCATTGTGAAGGGCGAT
CGCGCGCGTGCGATGGAAACGTTTGGGACGCGCGCCACGCCCTTCGACGA
ATCCGAGCACCGACCCATCGATTTCGATGGGCAAGTCCTCGTAGAACTCG
TCAAGCAAGATAACGCATGGAAAATCATAGAATGGAGCGCCGCAGGCTAG
ATGGTGTTGGTTGCCGCGTACTTCGCGGGATGCCAATCCGGAGGTTTACC
GGTTGACATCCCCGGATTGTCAGGACCACGAGTATCGGACGAAGAACAGA
TTGTTCGTCTGTTAGACGACGTTGCGAAAGGAATGGAGTCGCGCAAGATT
TTTCGCGTCCTCGCCAACGTTTCACAGAATTATCAGGATACTGAGGGACG
CGATTACGATGGAATACAGCAGTATCTACGACAAGTATTTCGAGACTATC
GGTTTATCGAAGTCACACGAGCGAGGCCGAGTATCATTGTGAAGGGCGAT
CGCGCGCGTGCGATGGAAACGTTTGGGACGCGCGCCACGCCCTTCGACGA
ATCCGAGCACCGACCCATCGATTTCGATGGGCAAGTCCTCGTAGAACTCG
TCAAGCAAGATAACGCATGGAAAATCATAGAATGGAGCGCCGCAGGCTAG
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