mRNA_M-pyrifera_M_contig108034.1710.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig108034.1710.1
Unique Name	mRNA_M-pyrifera_M_contig108034.1710.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot
Match: A0A2E7KKD0_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KKD0_9PLAN)

HSP 1 Score: 221 bits (563), Expect = 1.440e-67
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1

Query:    1 RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFLN 345
            RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFLN
Sbjct:  434 RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFLN 548

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BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot
Match: A0A518FTS6_9PLAN (Chromosome partition protein Smc n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FTS6_9PLAN)

HSP 1 Score: 214 bits (544), Expect = 1.090e-64
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 1

Query:    1 RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFLN 345
            RDQYI LLIKRLREAETAVIPVNWEAINNAPE+LVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEK L+DDQKKRWLGFLN
Sbjct:  441 RDQYISLLIKRLREAETAVIPVNWEAINNAPEDLVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKNLDDDQKKRWLGFLN 555

[Close]

BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot
Match: A0A3D3R305_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3R305_9PLAN)

HSP 1 Score: 179 bits (454), Expect = 5.630e-56
Identity = 93/115 (80.87%), Postives = 101/115 (87.83%), Query Frame = 1

Query:    1 RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFLN 345
            RD YI  LIKRLREAETA+IPVNWE +NNAP EL+  LQ L HDLEH+LGLAEVEISIERARLSRT+ MLQNREEQIRKKEKQLGLNLER E+E VP EK LN++QKKRWLGFLN
Sbjct:   26 RDLYISALIKRLREAETAIIPVNWEQLNNAPTELLVQLQALHHDLEHSLGLAEVEISIERARLSRTQSMLQNREEQIRKKEKQLGLNLERSEEEEVPAEKPLNEEQKKRWLGFLN 140

[Close]

BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot
Match: A0A517RK00_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RK00_9PLAN)

HSP 1 Score: 190 bits (482), Expect = 8.060e-56
Identity = 97/115 (84.35%), Postives = 105/115 (91.30%), Query Frame = 1

Query:    1 RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFLN 345
            RDQYI LLIKR+REAETA++PVNWE +NNAPEEL++ LQTL HDLEHNLGLAEVEISIERARLSRTE MLQ REE IRKKEKQLGLNLER E+E VP+E QLNDDQKKRWLGFLN
Sbjct:  407 RDQYISLLIKRVREAETALVPVNWEQLNNAPEELLEQLQTLHHDLEHNLGLAEVEISIERARLSRTESMLQGREEAIRKKEKQLGLNLERSEEEEVPDENQLNDDQKKRWLGFLN 521

[Close]

BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot
Match: A0A517VI93_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VI93_9PLAN)

HSP 1 Score: 184 bits (468), Expect = 1.590e-53
Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 1

Query:    1 RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFLN 345
            RDQYI  LIKRLREAETAVIPVNW+ +NNAP EL++ LQTL HDLEH+LGLAEVEISIERARLSRT+ MLQ+REEQIRKKEKQLGLNLER E E VP EK LNDDQKKRWLGFLN
Sbjct:  437 RDQYISALIKRLREAETAVIPVNWDQLNNAPAELLEQLQTLHHDLEHSLGLAEVEISIERARLSRTQSMLQSREEQIRKKEKQLGLNLERSEQEEVPAEKPLNDDQKKRWLGFLN 551

[Close]

BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot
Match: A0A2E2CB22_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CB22_9PLAN)

HSP 1 Score: 181 bits (458), Expect = 4.260e-52
Identity = 93/115 (80.87%), Postives = 101/115 (87.83%), Query Frame = 1

Query:    1 RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFLN 345
            RD +I  LIKRLREAETA+IPVNWE +NNAP ELV+ LQ L HDLEHNLGLAEVEISIERARLSRT+ MLQNREEQIRKKEKQLGLNL+R E E VP EK +ND+QKKRWLGFLN
Sbjct:  432 RDLFISALIKRLREAETAIIPVNWEQLNNAPTELVEQLQALHHDLEHNLGLAEVEISIERARLSRTQSMLQNREEQIRKKEKQLGLNLDRSEQEEVPAEKPMNDEQKKRWLGFLN 546

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BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot
Match: A6BZW1_9PLAN (Uncharacterized protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A6BZW1_9PLAN)

HSP 1 Score: 181 bits (458), Expect = 4.630e-52
Identity = 94/115 (81.74%), Postives = 102/115 (88.70%), Query Frame = 1

Query:    1 RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFLN 345
            RD YI  LIKRLREAETAVIPVNWE +NNAP EL++ LQ L HDLEH+LGLAEVEISIERARLSRT+ MLQNREEQIRKKEKQLGLNLER E+E VP EK LN++QKKRWLGFLN
Sbjct:  437 RDLYISALIKRLREAETAVIPVNWEQLNNAPTELLEQLQALHHDLEHSLGLAEVEISIERARLSRTQSMLQNREEQIRKKEKQLGLNLERSEEEEVPAEKPLNEEQKKRWLGFLN 551

[Close]

BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot
Match: A0A517WQR0_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WQR0_9PLAN)

HSP 1 Score: 167 bits (424), Expect = 1.360e-47
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 1

Query:    1 RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFLN 345
            RDQYI  LIKR+REAETAVIPVNWE +NNAP EL++ LQ L HDLEHNLGLAEVEISIERARLSRTE MLQNREEQIRKKEKQ+GLNLER E++   +E  ++DD+KK WLGFLN
Sbjct:  370 RDQYISQLIKRVREAETAVIPVNWEQLNNAPAELLEKLQVLHHDLEHNLGLAEVEISIERARLSRTESMLQNREEQIRKKEKQMGLNLEREEEKIDDDE--MDDDRKKSWLGFLN 482

[Close]

BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot
Match: A0A836RI16_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RI16_9PLAN)

HSP 1 Score: 89.7 bits (221), Expect = 6.230e-20
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 1

Query:    1 RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFLN 345
            RD YI  L+K+L+ A T   PV+WEA+ N P+EL + LQ LQ  L   L LAEV++S+ERARL+R E  L+ REEQ+ ++ KQ G       +EA   + + +  +++RWL FL+
Sbjct:   84 RDAYISYLLKKLKVAPTIAPPVDWEALQNTPDELKQKLQELQEQLTEKLRLAEVDLSLERARLAREEAALRLREEQLEQRLKQYGF------EEADSADGENDSKRRRRWLKFLS 192

[Close]

BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot
Match: A0A2D6SZC6_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SZC6_9PLAN)

HSP 1 Score: 79.0 bits (193), Expect = 5.940e-15
Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 1

Query:    1 RDQYIGLLIKRLREAETA-VIPVNWEAINNAPEELVKHLQTLQHDLEHNLGLAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEKQLNDDQKKRWLGFL 342
            RD YI  +IKRLR AE   V PV+W+ +  AP+EL   L+ LQ  L+  L +AEVE++IERARL R E  L+  EE + KK  ++G+++ER  D A  +++     + + WLG L
Sbjct:  239 RDAYIATVIKRLRVAEARHVQPVDWDNVQEAPDELRSCLEELQSQLKETLRVAEVELAIERARLGRKESELRQLEESVHKKMHEVGMDVERN-DHASGDDRATTG-KSRGWLGML 351

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig108034.1710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18


Match Name	E-value	Identity	Description
A0A2E7KKD0_9PLAN	1.440e-67	100.00	Uncharacterized protein n=6 Tax=Gimesia TaxID=1649...	[more]
A0A518FTS6_9PLAN	1.090e-64	96.52	Chromosome partition protein Smc n=3 Tax=Gimesia p...	[more]
A0A3D3R305_9PLAN	5.630e-56	80.87	Uncharacterized protein (Fragment) n=1 Tax=Gimesia...	[more]
A0A517RK00_9PLAN	8.060e-56	84.35	Uncharacterized protein n=2 Tax=Gimesia TaxID=1649...	[more]
A0A517VI93_9PLAN	1.590e-53	83.48	Uncharacterized protein n=1 Tax=Gimesia algae TaxI...	[more]
A0A2E2CB22_9PLAN	4.260e-52	80.87	Uncharacterized protein n=4 Tax=Planctomycetaceae ...	[more]
A6BZW1_9PLAN	4.630e-52	81.74	Uncharacterized protein n=5 Tax=Planctomycetaceae ...	[more]
A0A517WQR0_9PLAN	1.360e-47	77.39	Uncharacterized protein n=2 Tax=Gimesia aquarii Ta...	[more]
A0A836RI16_9PLAN	6.230e-20	44.35	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]
A0A2D6SZC6_9PLAN	5.940e-15	43.48	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig108034	contig	M-pyrifera_M_contig108034:267..614 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	183.7
Seed ortholog evalue	4.8e-44
Seed eggNOG ortholog	344747.PM8797T_22033
Hectar predicted targeting category	other localisation
EggNOG OGs	2FBNN@1,2J3XS@203682,343TQ@2
Best tax level	Planctomycetes
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	348
Cds size	348
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815590.048925-CDS-M-pyrifera_M_contig108034:266..614	1622815590.048925-CDS-M-pyrifera_M_contig108034:266..614	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig108034 267..614 -
1692277477.3228533-CDS-M-pyrifera_M_contig108034:266..614	1692277477.3228533-CDS-M-pyrifera_M_contig108034:266..614	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig108034 267..614 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig108034.1710.1	prot_M-pyrifera_M_contig108034.1710.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig108034 267..614 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig108034:267..614-
coding sequence from alignment at M-pyrifera_M_contig108034:267..614-

protein sequence of mRNA_M-pyrifera_M_contig108034.1710.1

>prot_M-pyrifera_M_contig108034.1710.1 ID=prot_M-pyrifera_M_contig108034.1710.1|Name=mRNA_M-pyrifera_M_contig108034.1710.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
RDQYIGLLIKRLREAETAVIPVNWEAINNAPEELVKHLQTLQHDLEHNLG
LAEVEISIERARLSRTELMLQNREEQIRKKEKQLGLNLERGEDEAVPEEK
QLNDDQKKRWLGFLN*

mRNA from alignment at M-pyrifera_M_contig108034:267..614-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig108034.1710.1 ID=mRNA_M-pyrifera_M_contig108034.1710.1|Name=mRNA_M-pyrifera_M_contig108034.1710.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig108034:267..614- (Macrocystis pyrifera P11B4 male)
CGGGATCAATACATCGGGCTGTTGATCAAGCGTCTGAGAGAAGCCGAAAC
CGCTGTAATTCCAGTCAACTGGGAAGCGATCAACAATGCTCCTGAAGAGC
TCGTGAAACATCTGCAGACACTGCAGCACGATCTGGAACACAACCTGGGA
CTGGCCGAAGTCGAGATCTCAATCGAACGAGCACGTCTCTCCCGTACCGA
ACTGATGCTGCAAAACCGCGAAGAACAGATTCGCAAAAAGGAAAAACAGC
TTGGTCTGAACCTCGAACGCGGCGAAGACGAAGCGGTTCCCGAGGAAAAG
CAGCTCAACGACGATCAGAAGAAACGCTGGCTCGGCTTTTTGAATTAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108034:267..614-

>mRNA_M-pyrifera_M_contig108034.1710.1 ID=mRNA_M-pyrifera_M_contig108034.1710.1|Name=mRNA_M-pyrifera_M_contig108034.1710.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig108034:267..614- (Macrocystis pyrifera P11B4 male)
CGGGATCAATACATCGGGCTGTTGATCAAGCGTCTGAGAGAAGCCGAAAC
CGCTGTAATTCCAGTCAACTGGGAAGCGATCAACAATGCTCCTGAAGAGC
TCGTGAAACATCTGCAGACACTGCAGCACGATCTGGAACACAACCTGGGA
CTGGCCGAAGTCGAGATCTCAATCGAACGAGCACGTCTCTCCCGTACCGA
ACTGATGCTGCAAAACCGCGAAGAACAGATTCGCAAAAAGGAAAAACAGC
TTGGTCTGAACCTCGAACGCGGCGAAGACGAAGCGGTTCCCGAGGAAAAG
CAGCTCAACGACGATCAGAAGAAACGCTGGCTCGGCTTTTTGAATTAACG
GGATCAATACATCGGGCTGTTGATCAAGCGTCTGAGAGAAGCCGAAACCG
CTGTAATTCCAGTCAACTGGGAAGCGATCAACAATGCTCCTGAAGAGCTC
GTGAAACATCTGCAGACACTGCAGCACGATCTGGAACACAACCTGGGACT
GGCCGAAGTCGAGATCTCAATCGAACGAGCACGTCTCTCCCGTACCGAAC
TGATGCTGCAAAACCGCGAAGAACAGATTCGCAAAAAGGAAAAACAGCTT
GGTCTGAACCTCGAACGCGGCGAAGACGAAGCGGTTCCCGAGGAAAAGCA
GCTCAACGACGATCAGAAGAAACGCTGGCTCGGCTTTTTGAATTAA