mRNA_M-pyrifera_M_contig108024.1708.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108024.1708.1
Unique NamemRNA_M-pyrifera_M_contig108024.1708.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108024.1708.1 vs. uniprot
Match: A0A2E7K4J6_9PLAN (CPBP family intramembrane metalloprotease n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K4J6_9PLAN)

HSP 1 Score: 124 bits (311), Expect = 3.280e-34
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1
Query:    1 LFGILHSVTRVYVIVPTLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYRQQTAETAAE 201
            LFGILHSVTRVYVIV +LMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYRQQTAETAAE
Sbjct:  144 LFGILHSVTRVYVIVASLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYRQQTAETAAE 210          
BLAST of mRNA_M-pyrifera_M_contig108024.1708.1 vs. uniprot
Match: A0A517Q116_9PLAN (CAAX amino terminal protease self-immunity n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q116_9PLAN)

HSP 1 Score: 105 bits (263), Expect = 5.250e-27
Identity = 51/62 (82.26%), Postives = 59/62 (95.16%), Query Frame = 1
Query:    1 LFGILHSVTRVYVIVPTLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYRQQTA 186
            +FGILHS+TR+YVIV TLMGVYLSLLL+LFTPQNLLIPITTHTVYDFLCF+M+I +YR+Q A
Sbjct:  144 IFGILHSITRLYVIVATLMGVYLSLLLVLFTPQNLLIPITTHTVYDFLCFLMIIHLYRKQQA 205          
BLAST of mRNA_M-pyrifera_M_contig108024.1708.1 vs. uniprot
Match: A0A350K3M9_9PLAN (CPBP family intramembrane metalloprotease (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K3M9_9PLAN)

HSP 1 Score: 100 bits (249), Expect = 3.140e-26
Identity = 47/60 (78.33%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 LFGILHSVTRVYVIVPTLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYRQQ 180
            LFG+LHS+TR+YVIV TLMGVY+SLLLI+FTPQNLLIP+TTHTVYDF+CFM ++  YRQQ
Sbjct:   23 LFGVLHSITRLYVIVATLMGVYMSLLLIMFTPQNLLIPVTTHTVYDFMCFMYVMHAYRQQ 82          
BLAST of mRNA_M-pyrifera_M_contig108024.1708.1 vs. uniprot
Match: A0A3C0AL22_9PLAN (CPBP family intramembrane metalloprotease n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AL22_9PLAN)

HSP 1 Score: 102 bits (255), Expect = 9.650e-26
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 1
Query:    1 LFGILHSVTRVYVIVPTLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYRQQTAETAA 198
            LFG+LHS+TR+YVIV TLMGVY+SLLLILFTPQNLLIP+TTHT+YDF+CFM ++ +YRQQ  +  A
Sbjct:  144 LFGVLHSITRLYVIVATLMGVYMSLLLILFTPQNLLIPVTTHTMYDFMCFMYIMHVYRQQKRDEQA 209          
BLAST of mRNA_M-pyrifera_M_contig108024.1708.1 vs. uniprot
Match: A6CEY8_9PLAN (Abortive infection protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A6CEY8_9PLAN)

HSP 1 Score: 101 bits (252), Expect = 2.720e-25
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 LFGILHSVTRVYVIVPTLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYRQQ 180
            LFGILHS+TR+YVIV TLMGVY+SLLLILFTPQNLLIP+TTHTVYDF+CFM ++  YRQQ
Sbjct:  144 LFGILHSITRLYVIVATLMGVYMSLLLILFTPQNLLIPVTTHTVYDFMCFMYVMHAYRQQ 203          
BLAST of mRNA_M-pyrifera_M_contig108024.1708.1 vs. uniprot
Match: A0A518I6J1_9PLAN (CAAX amino terminal protease self-immunity n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I6J1_9PLAN)

HSP 1 Score: 100 bits (249), Expect = 7.320e-25
Identity = 47/60 (78.33%), Postives = 57/60 (95.00%), Query Frame = 1
Query:    1 LFGILHSVTRVYVIVPTLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYRQQ 180
            LFGI+HS+TR+YVIV TLMGVYLSLLL+ F+PQNLLIPITTHT+YDFLCF+ ++R+YRQQ
Sbjct:  144 LFGIVHSITRLYVIVATLMGVYLSLLLVFFSPQNLLIPITTHTIYDFLCFITIMRLYRQQ 203          
BLAST of mRNA_M-pyrifera_M_contig108024.1708.1 vs. uniprot
Match: A0A517W350_9PLAN (CAAX amino terminal protease self-immunity n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W350_9PLAN)

HSP 1 Score: 100 bits (249), Expect = 8.210e-25
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 LFGILHSVTRVYVIVPTLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYRQQ 180
            LFGI+HSVTR+YVI+ TLMGVYLSLLL+ F+PQNLLIPI THT+YDFLCF+ +IRIYRQQ
Sbjct:  149 LFGIVHSVTRLYVIIATLMGVYLSLLLVTFSPQNLLIPIVTHTIYDFLCFLYIIRIYRQQ 208          
BLAST of mRNA_M-pyrifera_M_contig108024.1708.1 vs. uniprot
Match: A0A5C9C4P0_9BACT (Abortive infection protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9C4P0_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 3.540e-10
Identity = 27/65 (41.54%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 LFGILHSVTRVYVIVPTLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYRQQTAETA 195
            LFG +H +T +Y ++  ++G YLS L+ +  P NLL PI TH ++D+L F+M++ I+R+++A +A
Sbjct:   45 LFGAVHWITPLYALLAFVIGSYLSWLMAVIEPSNLLTPIVTHALHDYLAFLMIVAIHRRESATSA 109          
BLAST of mRNA_M-pyrifera_M_contig108024.1708.1 vs. uniprot
Match: A0A2S5QQL0_9GAMM (CPBP family intramembrane metalloprotease n=2 Tax=Methylococcaceae TaxID=403 RepID=A0A2S5QQL0_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 8.550e-10
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 LFGILHSVTRVYVIVPTLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYR 174
            LFG++HSVT +Y I+ TL+G+YL L +     +NLL PI  HT+YDFL F+ LI+ YR
Sbjct:  135 LFGVVHSVTPLYSILATLVGIYLGLAMDYNGERNLLTPIIIHTLYDFLAFLALIQAYR 192          
BLAST of mRNA_M-pyrifera_M_contig108024.1708.1 vs. uniprot
Match: A0A849RWB6_9GAMM (CPBP family intramembrane metalloprotease n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A849RWB6_9GAMM)

HSP 1 Score: 60.8 bits (146), Expect = 1.150e-9
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 LFGILHSVTRVYVIVPTLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCFMMLIRIYR 174
            LFG++H+VT +Y ++ TL+G+YLSL L     +NLL PI  H++YDFL F+ L+R+YR
Sbjct:  135 LFGLVHAVTPLYAVLATLVGLYLSLSLDYGGERNLLTPIIIHSLYDFLAFVALMRLYR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108024.1708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7K4J6_9PLAN3.280e-3497.01CPBP family intramembrane metalloprotease n=6 Tax=... [more]
A0A517Q116_9PLAN5.250e-2782.26CAAX amino terminal protease self-immunity n=4 Tax... [more]
A0A350K3M9_9PLAN3.140e-2678.33CPBP family intramembrane metalloprotease (Fragmen... [more]
A0A3C0AL22_9PLAN9.650e-2672.73CPBP family intramembrane metalloprotease n=1 Tax=... [more]
A6CEY8_9PLAN2.720e-2581.67Abortive infection protein n=8 Tax=Planctomycetace... [more]
A0A518I6J1_9PLAN7.320e-2578.33CAAX amino terminal protease self-immunity n=2 Tax... [more]
A0A517W350_9PLAN8.210e-2580.00CAAX amino terminal protease self-immunity n=2 Tax... [more]
A0A5C9C4P0_9BACT3.540e-1041.54Abortive infection protein (Fragment) n=1 Tax=Plan... [more]
A0A2S5QQL0_9GAMM8.550e-1053.45CPBP family intramembrane metalloprotease n=2 Tax=... [more]
A0A849RWB6_9GAMM1.150e-951.72CPBP family intramembrane metalloprotease n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108024contigM-pyrifera_M_contig108024:411..614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.1
Seed ortholog evalue4.1e-19
Seed eggNOG ortholog344747.PM8797T_06417
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.CAAX amino terminal protease
EggNOG OGs2J0ZS@203682,COG1266@1,COG1266@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.9727402-CDS-M-pyrifera_M_contig108024:410..6141622815589.9727402-CDS-M-pyrifera_M_contig108024:410..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108024 411..614 -
1692277477.3035343-CDS-M-pyrifera_M_contig108024:410..6141692277477.3035343-CDS-M-pyrifera_M_contig108024:410..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108024 411..614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108024.1708.1prot_M-pyrifera_M_contig108024.1708.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108024 411..614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108024.1708.1

>prot_M-pyrifera_M_contig108024.1708.1 ID=prot_M-pyrifera_M_contig108024.1708.1|Name=mRNA_M-pyrifera_M_contig108024.1708.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
LFGILHSVTRVYVIVPTLMGVYLSLLLILFTPQNLLIPITTHTVYDFLCF
MMLIRIYRQQTAETAAE*
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mRNA from alignment at M-pyrifera_M_contig108024:411..614-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108024.1708.1 ID=mRNA_M-pyrifera_M_contig108024.1708.1|Name=mRNA_M-pyrifera_M_contig108024.1708.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig108024:411..614- (Macrocystis pyrifera P11B4 male)
CTCTTTGGAATTCTACACTCGGTCACCCGCGTCTACGTCATCGTGCCGAC GCTGATGGGCGTCTACCTCAGCCTGCTGCTGATCCTCTTCACACCACAGA ACCTGCTGATCCCGATCACCACACACACGGTCTACGACTTCCTCTGCTTC ATGATGCTCATCCGCATCTACCGCCAACAGACAGCCGAGACCGCTGCTGA ATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108024:411..614-

>mRNA_M-pyrifera_M_contig108024.1708.1 ID=mRNA_M-pyrifera_M_contig108024.1708.1|Name=mRNA_M-pyrifera_M_contig108024.1708.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig108024:411..614- (Macrocystis pyrifera P11B4 male)
CTCTTTGGAATTCTACACTCGGTCACCCGCGTCTACGTCATCGTGCCGAC
GCTGATGGGCGTCTACCTCAGCCTGCTGCTGATCCTCTTCACACCACAGA
ACCTGCTGATCCCGATCACCACACACACGGTCTACGACTTCCTCTGCTTC
ATGATGCTCATCCGCATCTACCGCCAACAGACAGCCGAGACCGCTGCTGA
ATAACTCTTTGGAATTCTACACTCGGTCACCCGCGTCTACGTCATCGTGC
CGACGCTGATGGGCGTCTACCTCAGCCTGCTGCTGATCCTCTTCACACCA
CAGAACCTGCTGATCCCGATCACCACACACACGGTCTACGACTTCCTCTG
CTTCATGATGCTCATCCGCATCTACCGCCAACAGACAGCCGAGACCGCTG
CTGAATAA
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