mRNA_M-pyrifera_M_contig108022.1707.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108022.1707.1
Unique NamemRNA_M-pyrifera_M_contig108022.1707.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108022.1707.1 vs. uniprot
Match: A0A8K1CDP5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDP5_PYTOL)

HSP 1 Score: 70.5 bits (171), Expect = 1.180e-12
Identity = 38/101 (37.62%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 ALYAHF--LSLAKKEEGGEEVLSKKSWMRLLGAS-SSSLFVERAFILFDSDSNGFINATEFISALGILGEHSAYSERLKFAFQVMDLDGDGKLSKKEVRAM 294
            AL+ H+  +S  K+E+G   ++ +  +   LG +   SL+V+R F LFD++++ FI   EF+ ++ +L    +  E+LKF+F V+D D DGKLSK+E+ +M
Sbjct:   49 ALHLHYDLISSTKREDG---LIDRSEFQTALGFTVKESLYVDRIFQLFDANNDSFIGFDEFLQSISVLSSKGSTEEKLKFSFDVLDFDRDGKLSKQELLSM 146
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BLAST of mRNA_M-pyrifera_M_contig108022.1707.1 vs. uniprot
Match: A0A0P1AJV1_PLAHL (Calcineurin b-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJV1_PLAHL)

HSP 1 Score: 70.1 bits (170), Expect = 1.640e-12
Identity = 38/101 (37.62%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:    1 ALYAHF--LSLAKKEEGGEEVLSKKSWMRLLGAS-SSSLFVERAFILFDSDSNGFINATEFISALGILGEHSAYSERLKFAFQVMDLDGDGKLSKKEVRAM 294
            AL+ HF  +S AK+++G   ++ +  +   LG +   SL+V+R F LFD++++  I+  EFI ++ +L   S  +E++KF+F ++DLD DGKLS +E+ +M
Sbjct:   51 ALHVHFDLISSAKRDDG---LIDRNDFQTALGFTIKESLYVDRIFQLFDANNDSSISFNEFIQSVSVLSSKSGTAEKIKFSFDILDLDRDGKLSMQELLSM 148
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BLAST of mRNA_M-pyrifera_M_contig108022.1707.1 vs. uniprot
Match: K3WFF1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFF1_GLOUD)

HSP 1 Score: 69.3 bits (168), Expect = 3.450e-12
Identity = 37/101 (36.63%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 ALYAHF--LSLAKKEEGGEEVLSKKSWMRLLGAS-SSSLFVERAFILFDSDSNGFINATEFISALGILGEHSAYSERLKFAFQVMDLDGDGKLSKKEVRAM 294
            AL  H+  +S  K+++G   ++ +  +   LG +   SL+V+R F LFD++ + FI+ TEF+ ++ IL   ++  E+L+F+F ++D D DGKLSK+E+ +M
Sbjct:   55 ALNVHYDLISSVKRDDG---LIDRSEFQTALGFTVKESLYVDRIFQLFDANGDSFISFTEFLQSVSILSSKASTDEKLRFSFDILDFDRDGKLSKQELLSM 152
[Close]
BLAST of mRNA_M-pyrifera_M_contig108022.1707.1 vs. uniprot
Match: A0A2P4XF42_9STRA (TKL/LISK/LISK-DD1 protein Kinase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XF42_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.670e-12
Identity = 37/101 (36.63%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:    1 ALYAH--FLSLAKKEEGGEEVLSKKSWMRLLGAS-SSSLFVERAFILFDSDSNGFINATEFISALGILGEHSAYSERLKFAFQVMDLDGDGKLSKKEVRAM 294
            AL+AH  F+S AK+++G   ++ +  +   LG +   SL+V+R F LFD++++ FI+  EF+ ++ +L      +E++KF+F ++D D DGKLS +E+ +M
Sbjct:   29 ALHAHYDFISSAKRDDG---LIDRSEFQTALGFTVKESLYVDRIFQLFDTNNDNFISFDEFLQSVSVLSSKGGTAEKIKFSFDILDFDRDGKLSTQELLSM 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig108022.1707.1 vs. uniprot
Match: A0A6G0L8X1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6G0L8X1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.370e-11
Identity = 35/101 (34.65%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 ALYAHF--LSLAKKEEGGEEVLSKKSWMRLLGAS-SSSLFVERAFILFDSDSNGFINATEFISALGILGEHSAYSERLKFAFQVMDLDGDGKLSKKEVRAM 294
            AL+ H+  +S AK+++G   ++ +  +   LG +   SL+V+R F LFD++++ FI+  EF+ ++ +L      +E++KF+F ++D D DGKLS +E+  M
Sbjct:   50 ALHVHYDLVSCAKRDDG---LIDRSEFQTALGFTVKESLYVDRIFQLFDTNNDNFISFDEFLQSVSLLSSKGGTAEKIKFSFDILDFDRDGKLSTQELLTM 147
[Close]
BLAST of mRNA_M-pyrifera_M_contig108022.1707.1 vs. uniprot
Match: H3GR82_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GR82_PHYRM)

HSP 1 Score: 68.2 bits (165), Expect = 3.030e-11
Identity = 35/101 (34.65%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 ALYAHF--LSLAKKEEGGEEVLSKKSWMRLLGAS-SSSLFVERAFILFDSDSNGFINATEFISALGILGEHSAYSERLKFAFQVMDLDGDGKLSKKEVRAM 294
            AL+ H+  +S AK+++G   ++ +  +   LG +   SL+V+R F LFD++ + FI+  EF+ ++ +L    + +E++KF+F ++D D DGKLS +E+ +M
Sbjct:   51 ALHVHYDLISSAKRDDG---LIDRSEFQTALGFTVKESLYVDRIFQLFDTNDDNFISFNEFLQSVSVLSSKGSTAEKIKFSFDILDFDRDGKLSTQELLSM 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig108022.1707.1 vs. uniprot
Match: G4ZIV5_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZIV5_PHYSP)

HSP 1 Score: 67.8 bits (164), Expect = 4.140e-11
Identity = 35/101 (34.65%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 ALYAHF--LSLAKKEEGGEEVLSKKSWMRLLGAS-SSSLFVERAFILFDSDSNGFINATEFISALGILGEHSAYSERLKFAFQVMDLDGDGKLSKKEVRAM 294
            AL+ H+  +S AK+++G   ++ +  +   LG +   SL+V+R F LFD++++ FI+  EF+ ++ +L      +E++KF+F ++D D DGKLS +E+ +M
Sbjct:   50 ALHVHYDLISSAKRDDG---LIDRSEFQTALGFTVKESLYVDRIFQLFDTNNDNFISFDEFLQSVSVLSSKGGTAEKIKFSFDILDFDRDGKLSTQELLSM 147
[Close]
BLAST of mRNA_M-pyrifera_M_contig108022.1707.1 vs. uniprot
Match: A0A8J5IHD7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IHD7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.410e-11
Identity = 35/101 (34.65%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 ALYAHF--LSLAKKEEGGEEVLSKKSWMRLLGAS-SSSLFVERAFILFDSDSNGFINATEFISALGILGEHSAYSERLKFAFQVMDLDGDGKLSKKEVRAM 294
            AL  H+  +S AK+++G   ++ +  +   LG +   SL+V+R F LFD++++ FI+  EF+ ++ +L      +E++KF+F ++D D DGKLS +E+ +M
Sbjct:   51 ALNVHYDLISSAKRDDG---LIDRSEFQTALGFTVKESLYVDRIFQLFDTNNDNFISFDEFLQSVSVLSSKGGTTEKIKFSFDILDFDRDGKLSSQELLSM 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig108022.1707.1 vs. uniprot
Match: W2QTP5_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QTP5_PHYPN)

HSP 1 Score: 63.2 bits (152), Expect = 6.560e-10
Identity = 34/101 (33.66%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 ALYAHF--LSLAKKEEGGEEVLSKKSWMRLLGAS-SSSLFVERAFILFDSDSNGFINATEFISALGILGEHSAYSERLKFAFQVMDLDGDGKLSKKEVRAM 294
            AL  H+  +S A +++G   ++ +  +   LG +   SL+V+R F LFD++ + FI+  EF+ ++ +L      +E++KF+F ++D D DGKLS +E+ +M
Sbjct:   49 ALNVHYDLISSATRDDG---LIDRSEFQTALGFTVKESLYVDRIFQLFDTNDDDFISFDEFLQSVSVLSSKGGTAEKIKFSFDILDFDRDGKLSPQELLSM 146
[Close]
BLAST of mRNA_M-pyrifera_M_contig108022.1707.1 vs. uniprot
Match: A0A833RXU2_PHYIN (EF-hand domain pair n=3 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833RXU2_PHYIN)

HSP 1 Score: 63.2 bits (152), Expect = 6.710e-10
Identity = 35/101 (34.65%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 ALYAHF--LSLAKKEEGGEEVLSKKSWMRLLG-ASSSSLFVERAFILFDSDSNGFINATEFISALGILGEHSAYSERLKFAFQVMDLDGDGKLSKKEVRAM 294
            AL  H+  +S AK+++G   ++++  +   LG     SL+V+R F LFD++S+  I+  EF+ ++ +L      +E++KF+F ++D D DGKLS  E+ +M
Sbjct:   51 ALNVHYDLISSAKRDDG---LINRSEFQSALGFIVKESLYVDRIFQLFDTNSDNCISFDEFLQSVSVLSSKGGTAEKIKFSFDILDFDRDGKLSPHELLSM 148
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108022.1707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1CDP5_PYTOL1.180e-1237.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AJV1_PLAHL1.640e-1237.62Calcineurin b-like protein n=1 Tax=Plasmopara hals... [more]
K3WFF1_GLOUD3.450e-1236.63Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2P4XF42_9STRA4.670e-1236.63TKL/LISK/LISK-DD1 protein Kinase (Fragment) n=1 Ta... [more]
A0A6G0L8X1_9STRA2.370e-1134.65Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
H3GR82_PHYRM3.030e-1134.65Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
G4ZIV5_PHYSP4.140e-1134.65Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A8J5IHD7_9STRA8.410e-1134.65Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
W2QTP5_PHYPN6.560e-1033.66Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A833RXU2_PHYIN6.710e-1034.65EF-hand domain pair n=3 Tax=Phytophthora infestans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108022contigM-pyrifera_M_contig108022:322..615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue6.6e-10
Seed eggNOG ortholog5762.XP_002671166.1
KEGG koko:K06268
KEGG Pathwayko04010,ko04020,ko04022,ko04114,ko04218,ko04310,ko04360,ko04370,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04720,ko04724,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map04010,map04020,map04022,map04114,map04218,map04310,map04360,map04370,map04380,map04650,map04658,map04659,map04660,map04662,map04720,map04724,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0034@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.936226-CDS-M-pyrifera_M_contig108022:321..6151622815589.936226-CDS-M-pyrifera_M_contig108022:321..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108022 322..615 +
1692277477.2937982-CDS-M-pyrifera_M_contig108022:321..6151692277477.2937982-CDS-M-pyrifera_M_contig108022:321..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108022 322..615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108022.1707.1prot_M-pyrifera_M_contig108022.1707.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108022 322..615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108022.1707.1

>prot_M-pyrifera_M_contig108022.1707.1 ID=prot_M-pyrifera_M_contig108022.1707.1|Name=mRNA_M-pyrifera_M_contig108022.1707.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
ALYAHFLSLAKKEEGGEEVLSKKSWMRLLGASSSSLFVERAFILFDSDSN
GFINATEFISALGILGEHSAYSERLKFAFQVMDLDGDGKLSKKEVRAM
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mRNA from alignment at M-pyrifera_M_contig108022:322..615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108022.1707.1 ID=mRNA_M-pyrifera_M_contig108022.1707.1|Name=mRNA_M-pyrifera_M_contig108022.1707.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig108022:322..615+ (Macrocystis pyrifera P11B4 male)
GCGTTGTATGCACACTTTTTGTCTTTGGCGAAGAAGGAAGAAGGAGGAGA
AGAAGTATTGAGCAAGAAGAGTTGGATGCGGTTGCTAGGAGCTTCGTCAT
CTTCCCTCTTTGTGGAACGTGCCTTCATCTTGTTCGATTCCGACTCGAAT
GGGTTTATCAACGCCACCGAGTTCATCAGTGCCCTTGGTATCCTTGGAGA
GCACTCGGCCTATTCAGAGCGGCTCAAGTTTGCGTTCCAGGTGATGGATT
TGGACGGGGATGGCAAGCTGTCCAAGAAGGAGGTCCGTGCCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108022:322..615+

>mRNA_M-pyrifera_M_contig108022.1707.1 ID=mRNA_M-pyrifera_M_contig108022.1707.1|Name=mRNA_M-pyrifera_M_contig108022.1707.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig108022:322..615+ (Macrocystis pyrifera P11B4 male)
GCGTTGTATGCACACTTTTTGTCTTTGGCGAAGAAGGAAGAAGGAGGAGA
AGAAGTATTGAGCAAGAAGAGTTGGATGCGGTTGCTAGGAGCTTCGTCAT
CTTCCCTCTTTGTGGAACGTGCCTTCATCTTGTTCGATTCCGACTCGAAT
GGGTTTATCAACGCCACCGAGTTCATCAGTGCCCTTGGTATCCTTGGAGA
GCACTCGGCCTATTCAGAGCGGCTCAAGTTTGCGTTCCAGGTGATGGATT
TGGACGGGGATGGCAAGCTGTCCAAGAAGGAGGTCCGTGCCATGGCGTTG
TATGCACACTTTTTGTCTTTGGCGAAGAAGGAAGAAGGAGGAGAAGAAGT
ATTGAGCAAGAAGAGTTGGATGCGGTTGCTAGGAGCTTCGTCATCTTCCC
TCTTTGTGGAACGTGCCTTCATCTTGTTCGATTCCGACTCGAATGGGTTT
ATCAACGCCACCGAGTTCATCAGTGCCCTTGGTATCCTTGGAGAGCACTC
GGCCTATTCAGAGCGGCTCAAGTTTGCGTTCCAGGTGATGGATTTGGACG
GGGATGGCAAGCTGTCCAAGAAGGAGGTCCGTGCCATG
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