mRNA_M-pyrifera_M_contig108011.1704.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108011.1704.1
Unique NamemRNA_M-pyrifera_M_contig108011.1704.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig108011.1704.1 vs. uniprot
Match: A0A388LNC9_CHABU (Lysine--tRNA ligase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LNC9_CHABU)

HSP 1 Score: 263 bits (672), Expect = 1.520e-82
Identity = 118/171 (69.01%), Postives = 141/171 (82.46%), Query Frame = 1 
Query:    1 GFEVPRPLEGDDARAFLDGKCTELGIDCSAPRSTARLLDKLVAHFVEPSCVNPTFITEHPELVSPLAKYHRSRPGLTERFELFVNCTELCNAYTELNNPAVQRKRFMAQAADKAAGDDEAQAHDEDFCVALEYGLPPTAGWGMGIDRLCMLLADVNNIKEVLLFPAMKPQE 513
            GF+VP  L  +D R FL+  C + G++C  P++T RLLDKLV HF+E  CVNPTFI +HP+++SPLAK+HRS PGLTERFELF+N  E+CNAYTELN+PAVQR+RF+AQA D+A+GDDE+ A DE FC ALEYGLPPT GWGMGIDR+CMLL D  NIKEVLLFPAMKP E
Sbjct:  392 GFKVPEDLSAEDTRKFLEQMCDKFGVECKPPKTTTRLLDKLVGHFLEEQCVNPTFICDHPQIMSPLAKWHRSLPGLTERFELFINKHEVCNAYTELNDPAVQRERFLAQAKDRASGDDESMAMDEGFCTALEYGLPPTGGWGMGIDRMCMLLTDSQNIKEVLLFPAMKPGE 562
[Close]
BLAST of mRNA_M-pyrifera_M_contig108011.1704.1 vs. uniprot
Match: UPI0007120322 (lysine-tRNA ligase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007120322)

HSP 1 Score: 261 bits (666), Expect = 1.170e-81
Identity = 120/172 (69.77%), Postives = 140/172 (81.40%), Query Frame = 1 
Query:    1 GFEVPRPLEGDDARAFLDGKCTELGIDCSAPRSTARLLDKLVAHFVEPSCVNPTFITEHPELVSPLAKYHRSRPGLTERFELFVNCTELCNAYTELNNPAVQRKRFMAQAADKAAGDDEAQAHDEDFCVALEYGLPPTAGWGMGIDRLCMLLADVNNIKEVLLFPAMKPQED 516
            GF++P PLE  +   FL  KC +LGI+C+ P +T RLLDKLV HFVEP C+NP+FI +HP + SPLAKYHRS+PGL ERFELFVN TEL NAYTELNNP VQR+RFM QA DK+ GD+EAQ  DEDFCVALE+GLPPT GWG+G+DRL M L D NNIKEVLLFPAMKP ++
Sbjct:  396 GFKLPMPLESQECYDFLKAKCQQLGIECTPPLTTPRLLDKLVEHFVEPLCLNPSFICDHPAICSPLAKYHRSKPGLCERFELFVNYTELANAYTELNNPIVQRERFMQQAKDKSKGDEEAQCLDEDFCVALEHGLPPTGGWGLGVDRLAMFLTDSNNIKEVLLFPAMKPIDE 567
[Close]
BLAST of mRNA_M-pyrifera_M_contig108011.1704.1 vs. uniprot
Match: H2Y9E5_CIOSA (AA_TRNA_LIGASE_II domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2Y9E5_CIOSA)

HSP 1 Score: 249 bits (635), Expect = 7.840e-81
Identity = 119/173 (68.79%), Postives = 139/173 (80.35%), Query Frame = 1 
Query:    1 GFEVPRPLE--GDDARAFLDGKCTELGIDCSAPRSTARLLDKLVAHFVEPSCVNPTFITEHPELVSPLAKYHRSRPGLTERFELFVNCTELCNAYTELNNPAVQRKRFMAQAADKAAGDDEAQAHDEDFCVALEYGLPPTAGWGMGIDRLCMLLADVNNIKEVLLFPAMKPQE 513
            G E P+P E     A+  LD  C +L ++C APR+TARLLDKLV  ++E +C+NPTFITEHPE++SPLAK+HRS  G+TERFELFVN  E+CNAYTELN+P +QR+RF  QA DKAAGDDEAQ  DE+FC ALEYGLPPTAGWGMGIDRL M L D NNIKEVLLFPAMKP +
Sbjct:   77 GMEFPKPTELHTPAAQKQLDDICVKLAVECPAPRTTARLLDKLVGDYLEVTCINPTFITEHPEIMSPLAKWHRSIKGVTERFELFVNKKEICNAYTELNDPLIQRERFEQQALDKAAGDDEAQMVDENFCTALEYGLPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAMKPDD 249
[Close]
BLAST of mRNA_M-pyrifera_M_contig108011.1704.1 vs. uniprot
Match: A0A0H5R7W5_9EUKA (Lysine--tRNA ligase (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R7W5_9EUKA)

HSP 1 Score: 258 bits (658), Expect = 1.910e-80
Identity = 121/170 (71.18%), Postives = 139/170 (81.76%), Query Frame = 1 
Query:    1 GFEVPRPLEGDDARAFLDGKCTELGIDCSAPRSTARLLDKLVAHFVEPSCVNPTFITEHPELVSPLAKYHRSRPGLTERFELFVNCTELCNAYTELNNPAVQRKRFMAQAADKAAGDDEAQAHDEDFCVALEYGLPPTAGWGMGIDRLCMLLADVNNIKEVLLFPAMKPQ 510
            GF++PRPLE  +A  FL  KC EL + C+ P +TARLLDKLV HF+E S VNPTFI +HP L+SPLAKYHR +P LTERFELFV   ELCN+YTELNNP VQR+RF  Q+ D  AGDDEAQA DE FC+A+EYGLPPTAGWG+GIDRLCM L D+NNIKEVLLFPAMKP+
Sbjct:  404 GFKIPRPLESVEANEFLQAKCAELELICTPPVTTARLLDKLVGHFLEDSIVNPTFIIDHPGLMSPLAKYHRDQPDLTERFELFVCGRELCNSYTELNNPMVQRERFAEQSKDIDAGDDEAQAIDEPFCIAMEYGLPPTAGWGLGIDRLCMFLTDMNNIKEVLLFPAMKPE 573
[Close]
BLAST of mRNA_M-pyrifera_M_contig108011.1704.1 vs. uniprot
Match: A0A196SF91_BLAHN (Lysine--tRNA ligase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SF91_BLAHN)

HSP 1 Score: 257 bits (656), Expect = 3.880e-80
Identity = 119/172 (69.19%), Postives = 139/172 (80.81%), Query Frame = 1 
Query:    1 GFEVPRPLEGDDARAFLDGKCTELGIDCSAPRSTARLLDKLVAHFVEPSCVNPTFITEHPELVSPLAKYHRSRPGLTERFELFVNCTELCNAYTELNNPAVQRKRFMAQAADKAAGDDEAQAHDEDFCVALEYGLPPTAGWGMGIDRLCMLLADVNNIKEVLLFPAMKPQED 516
            GF+VP PLE D+  AFL+ KC EL I+ + P +T RLLDKLV HFVE  C+NP+FI + P + SPLAKYHRS+PG+ ERFELFVN TEL NAYTELNNP VQR+RFM QA DK+ GD+EAQ  DEDFCVA+E+GLPPT GWG+G+DRL M L D NNIKEVLLFPAMKP +D
Sbjct:  399 GFKVPMPLESDECHAFLEAKCKELDIEVTPPHTTPRLLDKLVEHFVERLCLNPSFICDQPAICSPLAKYHRSKPGMCERFELFVNYTELANAYTELNNPIVQRERFMQQAKDKSNGDEEAQCLDEDFCVAMEHGLPPTGGWGLGVDRLTMFLTDSNNIKEVLLFPAMKPVDD 570
[Close]
BLAST of mRNA_M-pyrifera_M_contig108011.1704.1 vs. uniprot
Match: A0A5A8CYM2_CAFRO (Lysine--tRNA ligase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYM2_CAFRO)

HSP 1 Score: 259 bits (661), Expect = 4.080e-80
Identity = 121/170 (71.18%), Postives = 138/170 (81.18%), Query Frame = 1 
Query:    1 GFEVPRPLEGDDARAFLDGKCTELGIDCSAPRSTARLLDKLVAHFVEPSCVN-PTFITEHPELVSPLAKYHRSRPGLTERFELFVNCTELCNAYTELNNPAVQRKRFMAQAADKAAGDDEAQAHDEDFCVALEYGLPPTAGWGMGIDRLCMLLADVNNIKEVLLFPAMKP 507
            GF +PRPLEG++ RAFLD KC EL +D   PRSTARLLDKLV HF+E +    PTFI +HPEL+SPLAKYHR+  GLTERFELF+   E+CNAYTELNNP VQR+RF+ Q   KA GDDEAQ+HDE FC ALEYGLPPT GWGMGIDR+ M L+D +NIKEVLLFPAMKP
Sbjct:  389 GFSIPRPLEGEECRAFLDAKCAELDLDVPEPRSTARLLDKLVGHFIEDNITTKPTFICDHPELMSPLAKYHRAEKGLTERFELFIAGKEICNAYTELNNPMVQRERFVEQMGAKAGGDDEAQSHDEGFCTALEYGLPPTGGWGMGIDRMAMFLSDNSNIKEVLLFPAMKP 558
[Close]
BLAST of mRNA_M-pyrifera_M_contig108011.1704.1 vs. uniprot
Match: A0A813M467_9BILA (Lysine--tRNA ligase n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813M467_9BILA)

HSP 1 Score: 253 bits (646), Expect = 1.280e-78
Identity = 118/174 (67.82%), Postives = 139/174 (79.89%), Query Frame = 1 
Query:    1 GFEVPRPL--EGDDARAFLDGKCTELGIDCSAPRSTARLLDKLVAHFVEPSCVNPTFITEHPELVSPLAKYHRSRPGLTERFELFVNCTELCNAYTELNNPAVQRKRFMAQAADKAAGDDEAQAHDEDFCVALEYGLPPTAGWGMGIDRLCMLLADVNNIKEVLLFPAMKPQED 516
            G ++P P     ++AR F D  C + G+DCS PR+T+RLLDKLV HF+E  C+NP+FI +HP+++SPLAKYHRS PGLTERFELF    ELCN+YTELN+P VQR+RF  QA DKAAGDDEAQA DE+FC ALEYGLPPT GWG+GIDRL M L D NNIKEVLLFPAMKP +D
Sbjct:  389 GVKLPSPTTYHTEEARKFFDDLCVKFGVDCSPPRTTSRLLDKLVGHFLESKCLNPSFICDHPQIMSPLAKYHRSEPGLTERFELFCGYRELCNSYTELNDPIVQRERFDEQAKDKAAGDDEAQAVDENFCTALEYGLPPTGGWGIGIDRLTMFLTDSNNIKEVLLFPAMKPLKD 562
[Close]
BLAST of mRNA_M-pyrifera_M_contig108011.1704.1 vs. uniprot
Match: A0A2P2KDD7_RHIMU (Lysine--tRNA ligase n=4 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KDD7_RHIMU)

HSP 1 Score: 250 bits (639), Expect = 2.770e-78
Identity = 114/172 (66.28%), Postives = 136/172 (79.07%), Query Frame = 1 
Query:    1 GFEVPRPLEGDDARAFLDGKCTELGIDCSAPRSTARLLDKLVAHFVEPSCVNPTFITEHPELVSPLAKYHRSRPGLTERFELFVNCTELCNAYTELNNPAVQRKRFMAQAADKAAGDDEAQAHDEDFCVALEYGLPPTAGWGMGIDRLCMLLADVNNIKEVLLFPAMKPQED 516
            G  +P+ L  D+A+ +L   C +  I C AP++TARLLDKLV HF+E +CVNPTFI  HPE++SPLAK+HRS+PGLTERFELF+N  ELCNAYTELN+P VQR+RF  Q  D+ +GDDEA A DE FC ALEYGLPPT GWG+GIDRL MLL D  NIKEVL FPAMKPQ++
Sbjct:  330 GLSIPKDLSSDEAKKYLSDACEKFEIKCPAPQTTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFINKRELCNAYTELNDPVVQRERFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLAMLLTDSLNIKEVLFFPAMKPQDE 501
[Close]
BLAST of mRNA_M-pyrifera_M_contig108011.1704.1 vs. uniprot
Match: A0A2I0HR91_PUNGR (AA_TRNA_LIGASE_II domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HR91_PUNGR)

HSP 1 Score: 246 bits (628), Expect = 6.770e-78
Identity = 112/172 (65.12%), Postives = 134/172 (77.91%), Query Frame = 1 
Query:    1 GFEVPRPLEGDDARAFLDGKCTELGIDCSAPRSTARLLDKLVAHFVEPSCVNPTFITEHPELVSPLAKYHRSRPGLTERFELFVNCTELCNAYTELNNPAVQRKRFMAQAADKAAGDDEAQAHDEDFCVALEYGLPPTAGWGMGIDRLCMLLADVNNIKEVLLFPAMKPQED 516
            G  +PR    ++A  +L   C +  + C  P++TARLLDKLV HF+E +CVNPTFI  HPE++SPLAK+HRS+PGLTERFELF+N  ELCNAYTELN+P VQR+RF  Q  D+ +GDDEA A DE FC ALEYGLPPT GWG+GIDRL MLL D  NIKEVLLFPAMKPQ++
Sbjct:  220 GLSIPRDFSSEEANKYLLEACAKFDVKCPPPQTTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFINKHELCNAYTELNDPVVQRQRFADQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLAMLLTDSQNIKEVLLFPAMKPQDE 391
[Close]
BLAST of mRNA_M-pyrifera_M_contig108011.1704.1 vs. uniprot
Match: A0A482V6P8_9CUCU (Lysine--tRNA ligase n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482V6P8_9CUCU)

HSP 1 Score: 248 bits (633), Expect = 8.740e-78
Identity = 117/170 (68.82%), Postives = 132/170 (77.65%), Query Frame = 1 
Query:    4 FEVPRPLEGDDARAFLDGKCTELGIDCSAPRSTARLLDKLVAHFVEPSCVNPTFITEHPELVSPLAKYHRSRPGLTERFELFVNCTELCNAYTELNNPAVQRKRFMAQAADKAAGDDEAQAHDEDFCVALEYGLPPTAGWGMGIDRLCMLLADVNNIKEVLLFPAMKPQE 513
            F  P  L  D A  FL   C    I+C +PR+TARLLDKLV  F+E  CVNPTFITEHP+++SPLAK+HRS PGLTERFELF+   E+CNAYTELN+P VQR+RF  QA DKAAGDDEAQ  DE+FC ALEYGLPPT GWGMGIDR+ M L D NNIKEVLLFPAMKP +
Sbjct:  290 FPAPEDLSSDAANKFLSDLCNAHNIECPSPRTTARLLDKLVGEFIEEQCVNPTFITEHPQIMSPLAKWHRSVPGLTERFELFIMKKEVCNAYTELNDPMVQRQRFEEQAKDKAAGDDEAQLIDENFCTALEYGLPPTGGWGMGIDRVAMFLTDNNNIKEVLLFPAMKPDD 459
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108011.1704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A388LNC9_CHABU1.520e-8269.01Lysine--tRNA ligase n=1 Tax=Chara braunii TaxID=69... [more]
UPI00071203221.170e-8169.77lysine-tRNA ligase n=1 Tax=Blastocystis sp. subtyp... [more]
H2Y9E5_CIOSA7.840e-8168.79AA_TRNA_LIGASE_II domain-containing protein n=1 Ta... [more]
A0A0H5R7W5_9EUKA1.910e-8071.18Lysine--tRNA ligase (Fragment) n=1 Tax=Spongospora... [more]
A0A196SF91_BLAHN3.880e-8069.19Lysine--tRNA ligase n=1 Tax=Blastocystis sp. subty... [more]
A0A5A8CYM2_CAFRO4.080e-8071.18Lysine--tRNA ligase n=2 Tax=Cafeteria roenbergensi... [more]
A0A813M467_9BILA1.280e-7867.82Lysine--tRNA ligase n=1 Tax=Brachionus calycifloru... [more]
A0A2P2KDD7_RHIMU2.770e-7866.28Lysine--tRNA ligase n=4 Tax=Rhizophora mucronata T... [more]
A0A2I0HR91_PUNGR6.770e-7865.12AA_TRNA_LIGASE_II domain-containing protein n=1 Ta... [more]
A0A482V6P8_9CUCU8.740e-7868.82Lysine--tRNA ligase n=1 Tax=Asbolus verrucosus Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108011contigM-pyrifera_M_contig108011:1..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score252.3
Seed ortholog evalue1.6e-64
Seed eggNOG ortholog7719.XP_009857990.1
Preferred nameAats-lys
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004812,GO:0004824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006430,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009059,GO:0009892,GO:0009893,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010629,GO:0016070,GO:0016874,GO:0016875,GO:0017101,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0022414,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0042325,GO:0042327,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044706,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048580,GO:0048582,GO:0048609,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051704,GO:0060255,GO:0060378,GO:0061062,GO:0061063,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:2000026
EggNOG free text desc.lysyl-tRNA aminoacylation
EggNOG OGs38C95@33154,3BE5C@33208,3CTVI@33213,482S1@7711,COG1190@1,KOG1885@2759
EC6.1.1.6
COG Functional cat.J
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.8247373-CDS-M-pyrifera_M_contig108011:0..5161622815589.8247373-CDS-M-pyrifera_M_contig108011:0..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108011 1..516 +
1692277477.2519505-CDS-M-pyrifera_M_contig108011:0..5161692277477.2519505-CDS-M-pyrifera_M_contig108011:0..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108011 1..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108011.1704.1prot_M-pyrifera_M_contig108011.1704.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108011 1..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108011.1704.1

>prot_M-pyrifera_M_contig108011.1704.1 ID=prot_M-pyrifera_M_contig108011.1704.1|Name=mRNA_M-pyrifera_M_contig108011.1704.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
GFEVPRPLEGDDARAFLDGKCTELGIDCSAPRSTARLLDKLVAHFVEPSC
VNPTFITEHPELVSPLAKYHRSRPGLTERFELFVNCTELCNAYTELNNPA
VQRKRFMAQAADKAAGDDEAQAHDEDFCVALEYGLPPTAGWGMGIDRLCM
LLADVNNIKEVLLFPAMKPQED
back to top

mRNA from alignment at M-pyrifera_M_contig108011:1..516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108011.1704.1 ID=mRNA_M-pyrifera_M_contig108011.1704.1|Name=mRNA_M-pyrifera_M_contig108011.1704.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig108011:1..516+ (Macrocystis pyrifera P11B4 male)
GGGTTCGAGGTGCCGCGGCCGCTGGAGGGCGACGACGCTCGCGCTTTCTT
GGACGGCAAGTGCACGGAGTTGGGGATCGACTGCAGCGCGCCCCGGTCTA
CCGCTCGGCTGCTGGACAAGTTGGTGGCTCACTTTGTGGAGCCGAGCTGC
GTGAACCCGACGTTCATCACGGAGCACCCAGAGCTGGTGTCCCCGCTGGC
CAAGTACCACCGGTCGCGCCCCGGTCTGACGGAGCGGTTTGAGCTGTTCG
TCAACTGCACGGAGCTGTGCAACGCGTACACGGAGTTGAACAACCCGGCA
GTGCAGCGGAAGAGGTTCATGGCGCAGGCGGCGGACAAGGCTGCTGGCGA
TGACGAGGCGCAGGCTCACGATGAGGACTTTTGCGTGGCTCTGGAGTACG
GGCTCCCGCCCACTGCTGGGTGGGGGATGGGCATCGACAGGTTGTGCATG
CTGCTGGCGGACGTGAACAACATCAAGGAGGTGCTCCTGTTCCCGGCCAT
GAAGCCGCAGGAGGAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108011:1..516+

>mRNA_M-pyrifera_M_contig108011.1704.1 ID=mRNA_M-pyrifera_M_contig108011.1704.1|Name=mRNA_M-pyrifera_M_contig108011.1704.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig108011:1..516+ (Macrocystis pyrifera P11B4 male)
GGGTTCGAGGTGCCGCGGCCGCTGGAGGGCGACGACGCTCGCGCTTTCTT
GGACGGCAAGTGCACGGAGTTGGGGATCGACTGCAGCGCGCCCCGGTCTA
CCGCTCGGCTGCTGGACAAGTTGGTGGCTCACTTTGTGGAGCCGAGCTGC
GTGAACCCGACGTTCATCACGGAGCACCCAGAGCTGGTGTCCCCGCTGGC
CAAGTACCACCGGTCGCGCCCCGGTCTGACGGAGCGGTTTGAGCTGTTCG
TCAACTGCACGGAGCTGTGCAACGCGTACACGGAGTTGAACAACCCGGCA
GTGCAGCGGAAGAGGTTCATGGCGCAGGCGGCGGACAAGGCTGCTGGCGA
TGACGAGGCGCAGGCTCACGATGAGGACTTTTGCGTGGCTCTGGAGTACG
GGCTCCCGCCCACTGCTGGGTGGGGGATGGGCATCGACAGGTTGTGCATG
CTGCTGGCGGACGTGAACAACATCAAGGAGGTGCTCCTGTTCCCGGCCAT
GAAGCCGCAGGAGGATGGGTTCGAGGTGCCGCGGCCGCTGGAGGGCGACG
ACGCTCGCGCTTTCTTGGACGGCAAGTGCACGGAGTTGGGGATCGACTGC
AGCGCGCCCCGGTCTACCGCTCGGCTGCTGGACAAGTTGGTGGCTCACTT
TGTGGAGCCGAGCTGCGTGAACCCGACGTTCATCACGGAGCACCCAGAGC
TGGTGTCCCCGCTGGCCAAGTACCACCGGTCGCGCCCCGGTCTGACGGAG
CGGTTTGAGCTGTTCGTCAACTGCACGGAGCTGTGCAACGCGTACACGGA
GTTGAACAACCCGGCAGTGCAGCGGAAGAGGTTCATGGCGCAGGCGGCGG
ACAAGGCTGCTGGCGATGACGAGGCGCAGGCTCACGATGAGGACTTTTGC
GTGGCTCTGGAGTACGGGCTCCCGCCCACTGCTGGGTGGGGGATGGGCAT
CGACAGGTTGTGCATGCTGCTGGCGGACGTGAACAACATCAAGGAGGTGC
TCCTGTTCCCGGCCATGAAGCCGCAGGAGGAT
back to top