mRNA_M-pyrifera_M_contig108007.1703.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108007.1703.1
Unique NamemRNA_M-pyrifera_M_contig108007.1703.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108007.1703.1 vs. uniprot
Match: A0A7R9BUM0_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BUM0_9CRUS)

HSP 1 Score: 70.5 bits (171), Expect = 2.520e-13
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   19 CTEAANL----HVCLSCGVRCCGRDASGHMVDHNCETNHHMALCLQDLSVWCYGCDAYIDPFCVPEVGACFAAAHVAKWGTP 252
            C ++AN      +CL C    CGRD + HM+ H+ E  H   +   DLS+WCY CD+Y+D F  PE+   +   H+AK+G+P
Sbjct:   75 CPDSANAVDNNWICLICYEILCGRDKAEHMMMHSVENGHLTCISFDDLSIWCYACDSYLDHF-RPELSPIYQQFHIAKFGSP 155          
BLAST of mRNA_M-pyrifera_M_contig108007.1703.1 vs. uniprot
Match: A0A7S2XG57_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XG57_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 4.810e-13
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 1
Query:    4 CATIGCTEAANLHVCLSCGVRCCGRDASGHMVDHNCETNHHMALCLQDLSVWCYGCDAYIDPFCVPEVGACFAAAHVAKWG 246
            C    C       VCL+C    CGR A GHMV HN ET H +A+ + DLS WCYGC +Y+    +  V   +   H AK+G
Sbjct:   75 CCADNCGNTKENWVCLTCKKVLCGRFAKGHMVKHNEETGHQVAMGIGDLSFWCYGCRSYLHHLAIRPVYDIYDVFHQAKFG 155          
BLAST of mRNA_M-pyrifera_M_contig108007.1703.1 vs. uniprot
Match: I1JAZ4_SOYBN (UBP-type domain-containing protein n=4 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1JAZ4_SOYBN)

HSP 1 Score: 67.8 bits (164), Expect = 1.380e-12
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   43 VCLSCGVRCCGRDASGHMVDHNCETN--HHMALCLQDLSVWCYGCDAYIDPFCVPEVGACFAAAHVAKWGTP 252
            +CLSC    C R  + HM+ H+ +TN  H +AL   DLSVWC+ CDAY+DP  +P++      A++ K+G P
Sbjct:   55 LCLSCKQVLCSRFVNKHMLHHSRDTNLTHCVALSFSDLSVWCFSCDAYLDPQLIPQLRPLHQLAYILKFGQP 126          
BLAST of mRNA_M-pyrifera_M_contig108007.1703.1 vs. uniprot
Match: UPI00193EAC3B (histone deacetylase 6 n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193EAC3B)

HSP 1 Score: 71.2 bits (173), Expect = 1.460e-12
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   19 CTEAANLHVCLSCGVRCCGRDASGHMVDHNCETNHHMALCLQDLSVWCYGCDAYID-PFCVPEVGACFAAAHVAKWGT 249
            CT +     CL C +  CGR  +GHMV H  +  H + L   DLSVWCYGC+AY+D P   P   A    AHV+K+GT
Sbjct: 1024 CTSSNENWTCLICYLVFCGRFVNGHMVQHGDDNRHPLCLSFSDLSVWCYGCEAYVDNPVLFPAKNA----AHVSKFGT 1097          
BLAST of mRNA_M-pyrifera_M_contig108007.1703.1 vs. uniprot
Match: UPI002026590B (histone deacetylase 6 isoform X1 n=2 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI002026590B)

HSP 1 Score: 70.9 bits (172), Expect = 1.990e-12
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   19 CTEAANLHVCLSCGVRCCGRDASGHMVDHNCETNHHMALCLQDLSVWCYGCDAYIDPFCVPEVGACFAAAHVAKWG 246
            C   A   VCL C   CCGR  + HMV HN E+ H + L  +DLSVWCYGC AY+     P + A  + AHV K+G
Sbjct: 1068 CGSRAENWVCLVCYKVCCGRYINQHMVAHNSESGHPLVLSFEDLSVWCYGCQAYVHH---PTLLAAKSQAHVEKFG 1140          
BLAST of mRNA_M-pyrifera_M_contig108007.1703.1 vs. uniprot
Match: A0A7S1GFA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GFA1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.660e-12
Identity = 34/81 (41.98%), Postives = 42/81 (51.85%), Query Frame = 1
Query:    4 CATIGCTEAANLHVCLSCGVRCCGRDASGHMVDHNCETNHHMALCLQDLSVWCYGCDAYIDPFCVPEVGACFAAAHVAKWG 246
            CA  G    ANL +CL C    C RD   HM+ H   T H +   L DLSVWCYGCD Y+D   + E+   +A  H+   G
Sbjct:   52 CADCGEATRANLCLCLRCHQVHCARDVKAHMLAHGEATGHALIANLGDLSVWCYGCDNYLDTLLIKELHPFYARLHLEVHG 132          
BLAST of mRNA_M-pyrifera_M_contig108007.1703.1 vs. uniprot
Match: A0A482X1X7_LAOST (UBP-type domain-containing protein n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482X1X7_LAOST)

HSP 1 Score: 69.3 bits (168), Expect = 6.920e-12
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    7 ATIGCTEAANLHVCLSCGVRCCGRDASGHMVDHNCETNHHMALCLQDLSVWCYGCDAYID-PFCVPEVGACFAAAHVAKWGT 249
            A   CT A     CL C    CGR  +GHMV H  + +H + L   DLSVWCYGC+AY+D P   P   A    AH++K+G+
Sbjct:  976 ACTDCTSAQENWTCLICYRVFCGRFVNGHMVQHGDDNSHPLCLSFSDLSVWCYGCEAYVDNPVLFPAKNA----AHLSKFGS 1053          
BLAST of mRNA_M-pyrifera_M_contig108007.1703.1 vs. uniprot
Match: UPI0010A08379 (histone deacetylase 6-like n=1 Tax=Podarcis muralis TaxID=64176 RepID=UPI0010A08379)

HSP 1 Score: 64.7 bits (156), Expect = 2.670e-11
Identity = 34/76 (44.74%), Postives = 40/76 (52.63%), Query Frame = 1
Query:   19 CTEAANLHVCLSCGVRCCGRDASGHMVDHNCETNHHMALCLQDLSVWCYGCDAYIDPFCVPEVGACFAAAHVAKWG 246
            C   A   VCL C   CCGR    HMV HN E+ H + L   DLSVWCYGC AY+     P +    + AH  K+G
Sbjct:   64 CGSVAENWVCLICYKVCCGRYIKQHMVAHNSESGHPLVLSFADLSVWCYGCQAYVHH---PILFEAKSQAHRLKFG 136          
BLAST of mRNA_M-pyrifera_M_contig108007.1703.1 vs. uniprot
Match: UPI0006259CEE (histone deacetylase 6 isoform X2 n=2 Tax=Athalia rosae TaxID=37344 RepID=UPI0006259CEE)

HSP 1 Score: 67.4 bits (163), Expect = 3.300e-11
Identity = 34/67 (50.75%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   43 VCLSCGVRCCGRDASGHMVDHNCETNHHMALCLQDLSVWCYGCDAYIDPFCVPEVGACFAAAHVAKW 243
            +CL C    C R+ + H V HN ET H M L   DLSVWCYGCDAYID    P + A   AAH +K+
Sbjct: 1098 ICLQCYTVHCARNINEHAVTHNQETEHPMTLSFSDLSVWCYGCDAYIDN---PRLYAAKNAAHRSKF 1161          
BLAST of mRNA_M-pyrifera_M_contig108007.1703.1 vs. uniprot
Match: A0A1S3JEN4_LINUN (LOW QUALITY PROTEIN: histone deacetylase 6-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JEN4_LINUN)

HSP 1 Score: 67.0 bits (162), Expect = 4.510e-11
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   43 VCLSCGVRCCGRDASGHMVDHNCETNHHMALCLQDLSVWCYGCDAYI-DPFCVPEVGACFAAAHVAKWG 246
            VCL+C   CCGR  + HM+ H   T H M L   DLSVWCYGCDAYI +   VP       AAH +K+G
Sbjct: 1083 VCLTCYEVCCGRYVNEHMLFHGLSTEHKMVLSYSDLSVWCYGCDAYIHNEIIVPHK----RAAHRSKFG 1147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108007.1703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9BUM0_9CRUS2.520e-1340.24Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
A0A7S2XG57_9EUKA4.810e-1341.98Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
I1JAZ4_SOYBN1.380e-1243.06UBP-type domain-containing protein n=4 Tax=Glycine... [more]
UPI00193EAC3B1.460e-1246.15histone deacetylase 6 n=1 Tax=Nilaparvata lugens T... [more]
UPI002026590B1.990e-1247.37histone deacetylase 6 isoform X1 n=2 Tax=Sphaeroda... [more]
A0A7S1GFA1_9STRA5.660e-1241.98Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A482X1X7_LAOST6.920e-1243.90UBP-type domain-containing protein n=1 Tax=Laodelp... [more]
UPI0010A083792.670e-1144.74histone deacetylase 6-like n=1 Tax=Podarcis murali... [more]
UPI0006259CEE3.300e-1150.75histone deacetylase 6 isoform X2 n=2 Tax=Athalia r... [more]
A0A1S3JEN4_LINUN4.510e-1150.72LOW QUALITY PROTEIN: histone deacetylase 6-like n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108007contigM-pyrifera_M_contig108007:191..442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.9
Seed ortholog evalue1e-11
Seed eggNOG ortholog88036.EFJ23082
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone deacetylase
EggNOG OGs37UTQ@33090,3GIWU@35493,COG0123@1,KOG1343@2759
COG Functional cat.B
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.7890062-CDS-M-pyrifera_M_contig108007:190..4421622815589.7890062-CDS-M-pyrifera_M_contig108007:190..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108007 191..442 +
1692277477.238758-CDS-M-pyrifera_M_contig108007:190..4421692277477.238758-CDS-M-pyrifera_M_contig108007:190..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108007 191..442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108007.1703.1prot_M-pyrifera_M_contig108007.1703.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108007 191..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108007.1703.1

>prot_M-pyrifera_M_contig108007.1703.1 ID=prot_M-pyrifera_M_contig108007.1703.1|Name=mRNA_M-pyrifera_M_contig108007.1703.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MCATIGCTEAANLHVCLSCGVRCCGRDASGHMVDHNCETNHHMALCLQDL
SVWCYGCDAYIDPFCVPEVGACFAAAHVAKWGTP
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mRNA from alignment at M-pyrifera_M_contig108007:191..442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108007.1703.1 ID=mRNA_M-pyrifera_M_contig108007.1703.1|Name=mRNA_M-pyrifera_M_contig108007.1703.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig108007:191..442+ (Macrocystis pyrifera P11B4 male)
ATGTGTGCCACCATTGGCTGCACAGAAGCGGCAAACCTGCACGTGTGCCT GTCATGCGGAGTACGCTGCTGTGGAAGGGACGCCAGCGGTCACATGGTGG ACCATAACTGTGAAACCAATCACCACATGGCACTGTGTCTGCAGGATCTG TCAGTGTGGTGCTATGGCTGTGATGCGTACATTGACCCGTTCTGTGTGCC CGAGGTAGGTGCCTGCTTTGCCGCCGCCCATGTGGCGAAGTGGGGCACAC CT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108007:191..442+

>mRNA_M-pyrifera_M_contig108007.1703.1 ID=mRNA_M-pyrifera_M_contig108007.1703.1|Name=mRNA_M-pyrifera_M_contig108007.1703.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig108007:191..442+ (Macrocystis pyrifera P11B4 male)
ATGTGTGCCACCATTGGCTGCACAGAAGCGGCAAACCTGCACGTGTGCCT
GTCATGCGGAGTACGCTGCTGTGGAAGGGACGCCAGCGGTCACATGGTGG
ACCATAACTGTGAAACCAATCACCACATGGCACTGTGTCTGCAGGATCTG
TCAGTGTGGTGCTATGGCTGTGATGCGTACATTGACCCGTTCTGTGTGCC
CGAGGTAGGTGCCTGCTTTGCCGCCGCCCATGTGGCGAAGTGGGGCACAC
CTATGTGTGCCACCATTGGCTGCACAGAAGCGGCAAACCTGCACGTGTGC
CTGTCATGCGGAGTACGCTGCTGTGGAAGGGACGCCAGCGGTCACATGGT
GGACCATAACTGTGAAACCAATCACCACATGGCACTGTGTCTGCAGGATC
TGTCAGTGTGGTGCTATGGCTGTGATGCGTACATTGACCCGTTCTGTGTG
CCCGAGGTAGGTGCCTGCTTTGCCGCCGCCCATGTGGCGAAGTGGGGCAC
ACCT
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