mRNA_M-pyrifera_M_contig108006.1702.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108006.1702.1
Unique NamemRNA_M-pyrifera_M_contig108006.1702.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig108006.1702.1 vs. uniprot
Match: A0A0J7J7I5_9GAMM ([SSU ribosomal protein S18P]-alanine acetyltransferase n=24 Tax=Marinobacter TaxID=2742 RepID=A0A0J7J7I5_9GAMM)

HSP 1 Score: 378 bits (971), Expect = 9.320e-130
Identity = 186/204 (91.18%), Postives = 195/204 (95.59%), Query Frame = 1
Query:    1 FLEMPRDRLIVAEADGELVGYCLVLMSAATRLARIYSIAVSPTVRGQGVGEKLMREAESEAVDAGRIIMRLEVREDNKGAIALYKRLGYRQFGTYRDYYEDHGTALRFERRILFYEPSREFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEELRLWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF 612
            FL+MPRDRLI+AE  GELVGYCLVLMSAATRLARIYSIAVSP  RGQGVGEKL+REAESEA +AGRI+MRLEVREDN GAI LYKRLGYRQFGTYRDYYEDHG ALRFERRILFYEPSR+FPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEEL++WREATTIFMLAGHGG GPHGLAL+AWNRGFEASAWISMEGALF
Sbjct:   38 FLDMPRDRLIIAENSGELVGYCLVLMSAATRLARIYSIAVSPAARGQGVGEKLVREAESEAAEAGRIVMRLEVREDNPGAINLYKRLGYRQFGTYRDYYEDHGDALRFERRILFYEPSRQFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEELKIWREATTIFMLAGHGGSGPHGLALSAWNRGFEASAWISMEGALF 241          
BLAST of mRNA_M-pyrifera_M_contig108006.1702.1 vs. uniprot
Match: A0A1I6G617_9GAMM ([SSU ribosomal protein S18P]-alanine acetyltransferase n=5 Tax=Marinobacter TaxID=2742 RepID=A0A1I6G617_9GAMM)

HSP 1 Score: 377 bits (969), Expect = 2.720e-129
Identity = 186/204 (91.18%), Postives = 195/204 (95.59%), Query Frame = 1
Query:    1 FLEMPRDRLIVAEADGELVGYCLVLMSAATRLARIYSIAVSPTVRGQGVGEKLMREAESEAVDAGRIIMRLEVREDNKGAIALYKRLGYRQFGTYRDYYEDHGTALRFERRILFYEPSREFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEELRLWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF 612
            FLEMPRDRLIVAE+DGELVGYCLVLMSAATRLARIYSIAVSP+ RGQGVGE L+REAE EA DA RIIMRLEVREDN GAI LYKRLGYRQFGTYRDYYEDHG ALRFERRILFYEPSR++PAVPYYPQTT+FSCGPAALIMAMA+LDEQQ LTTLEEL++WREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF
Sbjct:   49 FLEMPRDRLIVAESDGELVGYCLVLMSAATRLARIYSIAVSPSARGQGVGETLVREAEKEAADADRIIMRLEVREDNTGAINLYKRLGYRQFGTYRDYYEDHGNALRFERRILFYEPSRDYPAVPYYPQTTEFSCGPAALIMAMASLDEQQTLTTLEELKIWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF 252          
BLAST of mRNA_M-pyrifera_M_contig108006.1702.1 vs. uniprot
Match: A0A1M6TUU2_9GAMM (Ribosomal-protein-alanine acetyltransferase n=10 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1M6TUU2_9GAMM)

HSP 1 Score: 366 bits (940), Expect = 3.350e-124
Identity = 180/204 (88.24%), Postives = 190/204 (93.14%), Query Frame = 1
Query:    1 FLEMPRDRLIVAEADGELVGYCLVLMSAATRLARIYSIAVSPTVRGQGVGEKLMREAESEAVDAGRIIMRLEVREDNKGAIALYKRLGYRQFGTYRDYYEDHGTALRFERRILFYEPSREFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEELRLWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF 612
            FL+MPRDRLIVAEADGEL+GYCLVLMSAATR+ARIYSIAV PT RG GVGEKL++ AE EA DAGRI+MRLEVREDN  AIALYKRLGYRQFGTYRDYYEDHG ALRFERRILFYEP+REF  VPYYPQTTDFSCGPAALIMAMAALDEQQ LTTLEELR+WREATTIFMLAGHGGCGPHGLAL+AWNRGFE+SAWIS EG LF
Sbjct:   97 FLDMPRDRLIVAEADGELLGYCLVLMSAATRMARIYSIAVLPTARGHGVGEKLVKTAEREAADAGRILMRLEVREDNSSAIALYKRLGYRQFGTYRDYYEDHGNALRFERRILFYEPTREFIPVPYYPQTTDFSCGPAALIMAMAALDEQQSLTTLEELRIWREATTIFMLAGHGGCGPHGLALSAWNRGFESSAWISTEGPLF 300          
BLAST of mRNA_M-pyrifera_M_contig108006.1702.1 vs. uniprot
Match: A0A1D9GKF8_9GAMM (Ribosomal-protein-alanine N-acetyltransferase n=1 Tax=Marinobacter salinus TaxID=1874317 RepID=A0A1D9GKF8_9GAMM)

HSP 1 Score: 364 bits (934), Expect = 4.180e-124
Identity = 180/204 (88.24%), Postives = 191/204 (93.63%), Query Frame = 1
Query:    1 FLEMPRDRLIVAEADGELVGYCLVLMSAATRLARIYSIAVSPTVRGQGVGEKLMREAESEAVDAGRIIMRLEVREDNKGAIALYKRLGYRQFGTYRDYYEDHGTALRFERRILFYEPSREFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEELRLWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF 612
            FLEMPRDRLIVA    +LVGYCLVLM+AATRLARIYSIAVSPT RG+G GEKL+REAE EAV+AGRI+MRLEVREDN  AIALYKRLGYRQFGT RDYYEDHG ALRFERRILFYEPSR+FPAVPYYPQTT+FSCGPAALIMAMAALDEQQP+TTLEEL+LWREATTIFMLAGHGGCGPHGLALAAW+RGF ASAWIS EGALF
Sbjct:   38 FLEMPRDRLIVASLGEQLVGYCLVLMNAATRLARIYSIAVSPTARGRGAGEKLVREAEREAVEAGRIVMRLEVREDNGPAIALYKRLGYRQFGTLRDYYEDHGNALRFERRILFYEPSRKFPAVPYYPQTTEFSCGPAALIMAMAALDEQQPMTTLEELKLWREATTIFMLAGHGGCGPHGLALAAWHRGFNASAWISKEGALF 241          
BLAST of mRNA_M-pyrifera_M_contig108006.1702.1 vs. uniprot
Match: A0A2D5EFJ9_9GAMM (Ribosomal-protein-alanine N-acetyltransferase n=22 Tax=Marinobacter TaxID=2742 RepID=A0A2D5EFJ9_9GAMM)

HSP 1 Score: 362 bits (930), Expect = 1.640e-123
Identity = 175/204 (85.78%), Postives = 194/204 (95.10%), Query Frame = 1
Query:    1 FLEMPRDRLIVAEADGELVGYCLVLMSAATRLARIYSIAVSPTVRGQGVGEKLMREAESEAVDAGRIIMRLEVREDNKGAIALYKRLGYRQFGTYRDYYEDHGTALRFERRILFYEPSREFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEELRLWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF 612
            FLEMPRDRL++AE +GELVGYCLVLM+AATRLARIYSIAVSP  RG+GVGE+L+REAE EAV+A RIIMRLEVREDN GAIALY+RLGYRQFGTYRDYYEDHG ALRFERRIL+YEPSREF  VPYYPQTT+F+CGP+ALIMAMAALDEQQP++TLEEL++WREATTIFMLAGHGGCGPHGLAL+AW+RGFEASAWIS EGALF
Sbjct:   38 FLEMPRDRLVIAELNGELVGYCLVLMNAATRLARIYSIAVSPVARGRGVGERLVREAEKEAVEADRIIMRLEVREDNTGAIALYRRLGYRQFGTYRDYYEDHGDALRFERRILYYEPSREFLPVPYYPQTTEFTCGPSALIMAMAALDEQQPVSTLEELKIWREATTIFMLAGHGGCGPHGLALSAWHRGFEASAWISQEGALF 241          
BLAST of mRNA_M-pyrifera_M_contig108006.1702.1 vs. uniprot
Match: UPI002004202D (ribosomal protein S18-alanine N-acetyltransferase n=1 Tax=Marinobacter goseongensis TaxID=453838 RepID=UPI002004202D)

HSP 1 Score: 361 bits (926), Expect = 6.420e-123
Identity = 176/204 (86.27%), Postives = 190/204 (93.14%), Query Frame = 1
Query:    1 FLEMPRDRLIVAEADGELVGYCLVLMSAATRLARIYSIAVSPTVRGQGVGEKLMREAESEAVDAGRIIMRLEVREDNKGAIALYKRLGYRQFGTYRDYYEDHGTALRFERRILFYEPSREFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEELRLWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF 612
            FLEMPRDRLIVA   G LVGYCLVLMSAATR+ARIYS+AVSP  RG+GVGEKL+REAE EAV+A RI+MRLEVREDN+ AIALY+RLGYRQFGTYRDYYEDHG ALRFERRILFYEP+REFP VPYYPQTT+FSCGPAALIMAMA LDEQQPLTTLEEL++WREATTIFMLAGHGGCGPHGLAL+AW+RGF ASAWIS EGALF
Sbjct:   38 FLEMPRDRLIVANLHGALVGYCLVLMSAATRMARIYSVAVSPDARGRGVGEKLIREAEKEAVEADRIVMRLEVREDNEPAIALYRRLGYRQFGTYRDYYEDHGNALRFERRILFYEPTREFPKVPYYPQTTEFSCGPAALIMAMATLDEQQPLTTLEELKIWREATTIFMLAGHGGCGPHGLALSAWHRGFYASAWISKEGALF 241          
BLAST of mRNA_M-pyrifera_M_contig108006.1702.1 vs. uniprot
Match: A0A3T0CSU1_9GAMM (Ribosomal-protein-alanine N-acetyltransferase n=2 Tax=Marinobacter TaxID=2742 RepID=A0A3T0CSU1_9GAMM)

HSP 1 Score: 361 bits (927), Expect = 7.210e-123
Identity = 177/204 (86.76%), Postives = 189/204 (92.65%), Query Frame = 1
Query:    1 FLEMPRDRLIVAEADGELVGYCLVLMSAATRLARIYSIAVSPTVRGQGVGEKLMREAESEAVDAGRIIMRLEVREDNKGAIALYKRLGYRQFGTYRDYYEDHGTALRFERRILFYEPSREFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEELRLWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF 612
            FLEMPRDRLIVAE DG LVGYCLVLM+AATRLARIYSIAVSP  RG+G+GEKL+REAE EAV+A RI+MRLEVREDN  AI LYKRLGYRQFGTYRDYYEDHG ALRFERRILFYEPSR+FP VPYYPQTT+FSCGPAALIMAMA LD+ QP+TTLEEL+LWREATTIFMLAGHGGCGPHGLAL+AWNRGF ASAWIS EGALF
Sbjct:   38 FLEMPRDRLIVAELDGGLVGYCLVLMNAATRLARIYSIAVSPVARGRGLGEKLVREAEREAVEADRIVMRLEVREDNDAAINLYKRLGYRQFGTYRDYYEDHGDALRFERRILFYEPSRKFPKVPYYPQTTEFSCGPAALIMAMATLDDHQPVTTLEELKLWREATTIFMLAGHGGCGPHGLALSAWNRGFHASAWISKEGALF 241          
BLAST of mRNA_M-pyrifera_M_contig108006.1702.1 vs. uniprot
Match: UPI001BCD3CB1 (ribosomal protein S18-alanine N-acetyltransferase n=1 Tax=Marinobacter lipolyticus TaxID=209639 RepID=UPI001BCD3CB1)

HSP 1 Score: 360 bits (924), Expect = 1.290e-122
Identity = 175/204 (85.78%), Postives = 188/204 (92.16%), Query Frame = 1
Query:    1 FLEMPRDRLIVAEADGELVGYCLVLMSAATRLARIYSIAVSPTVRGQGVGEKLMREAESEAVDAGRIIMRLEVREDNKGAIALYKRLGYRQFGTYRDYYEDHGTALRFERRILFYEPSREFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEELRLWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF 612
            FL+MPRDRLIVAE D +L+GYCLVLM+AATRLARIYSIAV P  RG+GVGEKL+R AE EA DA RI+MRLEVREDN  AIALY+RLGYRQFGTYRDYYEDHG ALRFERRILFYEP+R+FP VPYYPQTT+FSCGPAALIMAMA LDEQQP+TTLEELR+WREATTIFMLAGHGGCGPHGLALAAWNRGF ASAWIS EGALF
Sbjct:   38 FLDMPRDRLIVAELDDQLLGYCLVLMNAATRLARIYSIAVCPDARGRGVGEKLIRAAEKEAADADRIVMRLEVREDNSAAIALYRRLGYRQFGTYRDYYEDHGDALRFERRILFYEPTRQFPKVPYYPQTTEFSCGPAALIMAMATLDEQQPVTTLEELRIWREATTIFMLAGHGGCGPHGLALAAWNRGFHASAWISKEGALF 241          
BLAST of mRNA_M-pyrifera_M_contig108006.1702.1 vs. uniprot
Match: A0A1I4W3T2_9GAMM ([SSU ribosomal protein S18P]-alanine acetyltransferase n=3 Tax=Marinobacter pelagius TaxID=379482 RepID=A0A1I4W3T2_9GAMM)

HSP 1 Score: 360 bits (924), Expect = 1.380e-122
Identity = 174/204 (85.29%), Postives = 189/204 (92.65%), Query Frame = 1
Query:    1 FLEMPRDRLIVAEADGELVGYCLVLMSAATRLARIYSIAVSPTVRGQGVGEKLMREAESEAVDAGRIIMRLEVREDNKGAIALYKRLGYRQFGTYRDYYEDHGTALRFERRILFYEPSREFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEELRLWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF 612
            FLEMPRDRLIVAE DGEL+GYCLVLM+AATRLARIYSIAV+P  RG+G+GE L+REAE EA +A RIIMRLEVREDN GAI LYKRLGYRQFGTYRDYYEDHG ALRFERRIL+YEPSREF  VPYYPQTT+F+CGP+ALIMAMAALDE QP+TTLEEL++WREATTIFMLAGHGGCGPHGLALA WNRGF+ASAWIS EGALF
Sbjct:   38 FLEMPRDRLIVAEQDGELIGYCLVLMNAATRLARIYSIAVAPAARGRGIGEMLIREAEKEAAEADRIIMRLEVREDNPGAINLYKRLGYRQFGTYRDYYEDHGNALRFERRILYYEPSREFVPVPYYPQTTEFTCGPSALIMAMAALDENQPVTTLEELKIWREATTIFMLAGHGGCGPHGLALACWNRGFDASAWISQEGALF 241          
BLAST of mRNA_M-pyrifera_M_contig108006.1702.1 vs. uniprot
Match: A0A0N8KKJ9_9GAMM (Ribosomal-protein-alanine acetyltransferase n=10 Tax=Marinobacter TaxID=2742 RepID=A0A0N8KKJ9_9GAMM)

HSP 1 Score: 359 bits (922), Expect = 2.870e-122
Identity = 176/204 (86.27%), Postives = 191/204 (93.63%), Query Frame = 1
Query:    1 FLEMPRDRLIVAEADGELVGYCLVLMSAATRLARIYSIAVSPTVRGQGVGEKLMREAESEAVDAGRIIMRLEVREDNKGAIALYKRLGYRQFGTYRDYYEDHGTALRFERRILFYEPSREFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPLTTLEELRLWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGALF 612
            FLEMPRDRLIVAE D ELVGYCLVLM+AATRLARIYSIAVSP+VRG+GVGE L+REAE EAVDA RI+MRLEVREDN GAI LY+RLGYRQFGTYRDYYEDHGTALRFERRIL+YEPSRE+  VPYYPQTT+F+CGP+ALIMAMAALDE Q L TLEEL++WREATTIFMLAGHGGCGPHGLAL+AW+RGFEASAWIS EGALF
Sbjct:   40 FLEMPRDRLIVAEQDSELVGYCLVLMNAATRLARIYSIAVSPSVRGRGVGEMLVREAEKEAVDADRIVMRLEVREDNAGAINLYRRLGYRQFGTYRDYYEDHGTALRFERRILYYEPSREYLPVPYYPQTTEFTCGPSALIMAMAALDEHQTLNTLEELKIWREATTIFMLAGHGGCGPHGLALSAWHRGFEASAWISQEGALF 243          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108006.1702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7J7I5_9GAMM9.320e-13091.18[SSU ribosomal protein S18P]-alanine acetyltransfe... [more]
A0A1I6G617_9GAMM2.720e-12991.18[SSU ribosomal protein S18P]-alanine acetyltransfe... [more]
A0A1M6TUU2_9GAMM3.350e-12488.24Ribosomal-protein-alanine acetyltransferase n=10 T... [more]
A0A1D9GKF8_9GAMM4.180e-12488.24Ribosomal-protein-alanine N-acetyltransferase n=1 ... [more]
A0A2D5EFJ9_9GAMM1.640e-12385.78Ribosomal-protein-alanine N-acetyltransferase n=22... [more]
UPI002004202D6.420e-12386.27ribosomal protein S18-alanine N-acetyltransferase ... [more]
A0A3T0CSU1_9GAMM7.210e-12386.76Ribosomal-protein-alanine N-acetyltransferase n=2 ... [more]
UPI001BCD3CB11.290e-12285.78ribosomal protein S18-alanine N-acetyltransferase ... [more]
A0A1I4W3T2_9GAMM1.380e-12285.29[SSU ribosomal protein S18P]-alanine acetyltransfe... [more]
A0A0N8KKJ9_9GAMM2.870e-12286.27Ribosomal-protein-alanine acetyltransferase n=10 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108006contigM-pyrifera_M_contig108006:3..614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score395.2
Seed ortholog evalue1.8e-107
Seed eggNOG ortholog225937.HP15_1373
Preferred namerimI
KEGG koko:K03789
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG0456 Acetyltransferases
EggNOG OGs1MVZ2@1224,1RSC5@1236,465P6@72275,COG0454@1,COG0456@2
EC2.3.1.128
COG Functional cat.K
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons1
Model size612
Cds size603
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.748902-UTR-M-pyrifera_M_contig108006:2..111622815589.748902-UTR-M-pyrifera_M_contig108006:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108006 3..11 +
1692277477.2187495-UTR-M-pyrifera_M_contig108006:2..111692277477.2187495-UTR-M-pyrifera_M_contig108006:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig108006 3..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.759983-CDS-M-pyrifera_M_contig108006:11..6141622815589.759983-CDS-M-pyrifera_M_contig108006:11..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108006 12..614 +
1692277477.2292182-CDS-M-pyrifera_M_contig108006:11..6141692277477.2292182-CDS-M-pyrifera_M_contig108006:11..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108006 12..614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108006.1702.1prot_M-pyrifera_M_contig108006.1702.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108006 12..614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108006.1702.1

>prot_M-pyrifera_M_contig108006.1702.1 ID=prot_M-pyrifera_M_contig108006.1702.1|Name=mRNA_M-pyrifera_M_contig108006.1702.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=201bp
MPRDRLIVAEADGELVGYCLVLMSAATRLARIYSIAVSPTVRGQGVGEKL
MREAESEAVDAGRIIMRLEVREDNKGAIALYKRLGYRQFGTYRDYYEDHG
TALRFERRILFYEPSREFPAVPYYPQTTDFSCGPAALIMAMAALDEQQPL
TTLEELRLWREATTIFMLAGHGGCGPHGLALAAWNRGFEASAWISMEGAL
F
back to top

mRNA from alignment at M-pyrifera_M_contig108006:3..614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108006.1702.1 ID=mRNA_M-pyrifera_M_contig108006.1702.1|Name=mRNA_M-pyrifera_M_contig108006.1702.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig108006:3..614+ (Macrocystis pyrifera P11B4 male)
TTTCTGGAAATGCCCAGGGACCGGTTGATTGTGGCTGAGGCCGATGGCGA ATTGGTGGGTTATTGCCTGGTTCTGATGAGCGCGGCTACCCGGCTGGCCC GCATTTACTCCATTGCTGTTTCGCCAACGGTGCGCGGCCAGGGCGTAGGC GAGAAGCTGATGCGTGAGGCGGAATCCGAAGCAGTGGATGCCGGCCGTAT TATCATGCGCCTGGAGGTCCGTGAAGATAATAAAGGTGCAATCGCACTCT ACAAGCGCCTGGGCTATCGCCAGTTTGGCACCTACCGGGACTACTACGAA GACCACGGCACTGCCCTGCGTTTTGAGCGGCGAATACTGTTCTACGAGCC GTCCCGGGAATTCCCCGCGGTGCCCTATTACCCGCAGACCACGGATTTTT CCTGCGGCCCCGCCGCCCTGATCATGGCCATGGCCGCCCTGGATGAGCAG CAACCGCTGACAACGCTGGAAGAACTAAGATTATGGCGGGAGGCGACCAC CATCTTCATGCTTGCCGGCCACGGCGGCTGCGGCCCCCACGGACTGGCAC TCGCCGCCTGGAACCGGGGCTTTGAAGCCAGTGCGTGGATCAGCATGGAA GGTGCTTTGTTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig108006:3..614+

>mRNA_M-pyrifera_M_contig108006.1702.1 ID=mRNA_M-pyrifera_M_contig108006.1702.1|Name=mRNA_M-pyrifera_M_contig108006.1702.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1206bp|location=Sequence derived from alignment at M-pyrifera_M_contig108006:3..614+ (Macrocystis pyrifera P11B4 male)
ATGCCCAGGGACCGGTTGATTGTGGCTGAGGCCGATGGCGAATTGGTGGG
TTATTGCCTGGTTCTGATGAGCGCGGCTACCCGGCTGGCCCGCATTTACT
CCATTGCTGTTTCGCCAACGGTGCGCGGCCAGGGCGTAGGCGAGAAGCTG
ATGCGTGAGGCGGAATCCGAAGCAGTGGATGCCGGCCGTATTATCATGCG
CCTGGAGGTCCGTGAAGATAATAAAGGTGCAATCGCACTCTACAAGCGCC
TGGGCTATCGCCAGTTTGGCACCTACCGGGACTACTACGAAGACCACGGC
ACTGCCCTGCGTTTTGAGCGGCGAATACTGTTCTACGAGCCGTCCCGGGA
ATTCCCCGCGGTGCCCTATTACCCGCAGACCACGGATTTTTCCTGCGGCC
CCGCCGCCCTGATCATGGCCATGGCCGCCCTGGATGAGCAGCAACCGCTG
ACAACGCTGGAAGAACTAAGATTATGGCGGGAGGCGACCACCATCTTCAT
GCTTGCCGGCCACGGCGGCTGCGGCCCCCACGGACTGGCACTCGCCGCCT
GGAACCGGGGCTTTGAAGCCAGTGCGTGGATCAGCATGGAAGGTGCTTTG
TTCATGCCCAGGGACCGGTTGATTGTGGCTGAGGCCGATGGCGAATTGGT
GGGTTATTGCCTGGTTCTGATGAGCGCGGCTACCCGGCTGGCCCGCATTT
ACTCCATTGCTGTTTCGCCAACGGTGCGCGGCCAGGGCGTAGGCGAGAAG
CTGATGCGTGAGGCGGAATCCGAAGCAGTGGATGCCGGCCGTATTATCAT
GCGCCTGGAGGTCCGTGAAGATAATAAAGGTGCAATCGCACTCTACAAGC
GCCTGGGCTATCGCCAGTTTGGCACCTACCGGGACTACTACGAAGACCAC
GGCACTGCCCTGCGTTTTGAGCGGCGAATACTGTTCTACGAGCCGTCCCG
GGAATTCCCCGCGGTGCCCTATTACCCGCAGACCACGGATTTTTCCTGCG
GCCCCGCCGCCCTGATCATGGCCATGGCCGCCCTGGATGAGCAGCAACCG
CTGACAACGCTGGAAGAACTAAGATTATGGCGGGAGGCGACCACCATCTT
CATGCTTGCCGGCCACGGCGGCTGCGGCCCCCACGGACTGGCACTCGCCG
CCTGGAACCGGGGCTTTGAAGCCAGTGCGTGGATCAGCATGGAAGGTGCT
TTGTTC
back to top