mRNA_M-pyrifera_M_contig108003.1701.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig108003.1701.1
Unique NamemRNA_M-pyrifera_M_contig108003.1701.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig108003.1701.1 vs. uniprot
Match: Q27PT0_VERVE (Sodium:galactoside symporter-like protein (Fragment) n=1 Tax=Vermamoeba vermiformis TaxID=5778 RepID=Q27PT0_VERVE)

HSP 1 Score: 68.9 bits (167), Expect = 3.260e-12
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 FLNAFLLEVANIDAVWVGNIQLVKQFYDAITDPMVGRLSDRTVTRWGRRKPFVVLFALP 177
            FL+ FLLEVA ++    GNI LV   +DA   P++G++SD T TRWGRR+P+++L A+P
Sbjct:   21 FLSTFLLEVAGVEPYLAGNIMLVGHVFDAFAHPIIGKISDNTRTRWGRRRPWIMLGAIP 79
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BLAST of mRNA_M-pyrifera_M_contig108003.1701.1 vs. uniprot
Match: A0A7C1I9E2_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1I9E2_9CHLR)

HSP 1 Score: 68.6 bits (166), Expect = 4.470e-12
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 FLNAFLLEVANIDAVWVGNIQLVKQFYDAITDPMVGRLSDRTVTRWGRRKPFVVLFALP 177
            FLNAFLL+VA +    VG + L+ + +DA+ DP++G LSDRT TRWGRR+P+++  A+P
Sbjct:   34 FLNAFLLDVAGLRPAAVGIVFLIVKVWDAVNDPLIGTLSDRTHTRWGRRRPWLLFGAVP 92
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BLAST of mRNA_M-pyrifera_M_contig108003.1701.1 vs. uniprot
Match: A0A3A0AX34_9CHLR (MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AX34_9CHLR)

HSP 1 Score: 67.8 bits (164), Expect = 8.380e-12
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 FLNAFLLEVANIDAVWVGNIQLVKQFYDAITDPMVGRLSDRTVTRWGRRKPFVVLFALP 177
            FL  FL +VA +D    G+I L+ + +DA+ DPMVG LSDRT TRWGRR+P+++  A+P
Sbjct:   30 FLLIFLTDVARLDPAAAGSILLITKIWDAVNDPMVGWLSDRTRTRWGRRRPWILFGAIP 88
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BLAST of mRNA_M-pyrifera_M_contig108003.1701.1 vs. uniprot
Match: A0A2E0ZNK9_9CHLR (MFS transporter n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0ZNK9_9CHLR)

HSP 1 Score: 67.4 bits (163), Expect = 1.150e-11
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 FLNAFLLEVANIDAVWVGNIQLVKQFYDAITDPMVGRLSDRTVTRWGRRKPFVVLFALP 177
            FLNAFLL++A I     G I L+ + +D++ DP+VGRL+DRT TRWGRR+P+++  A+P
Sbjct:   41 FLNAFLLDIAGIRPGAAGIIFLIVKIWDSVNDPLVGRLTDRTNTRWGRRRPWLLFGAVP 99
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BLAST of mRNA_M-pyrifera_M_contig108003.1701.1 vs. uniprot
Match: UPI0019E89B49 (MFS transporter n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019E89B49)

HSP 1 Score: 67.4 bits (163), Expect = 1.150e-11
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   13 FLLEVANIDAVWVGNIQLVKQFYDAITDPMVGRLSDRTVTRWGRRKPFVVLFALP 177
            FL +VA I  +W G + L+ + +DA+ DP+VG LSDRT TRWGRR P+++L A+P
Sbjct:   43 FLTDVAGISPLWAGTVLLIGKVWDAVNDPIVGVLSDRTKTRWGRRYPWILLSAIP 97
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BLAST of mRNA_M-pyrifera_M_contig108003.1701.1 vs. uniprot
Match: A0A7S4L353_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L353_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 1.330e-11
Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 FLNAFLLEVANIDAVWVGNIQLVKQFYDAITDPMVGRLSDRTVTRWGRRKPFVV 162
            +LN +LL+   +DA  VG I + KQ +DA +DP+VG+LSD T T+WGRR+P++V
Sbjct:   29 YLNPYLLDAVGMDANLVGAILVCKQMWDAFSDPIVGKLSDNTKTKWGRRRPWIV 82
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BLAST of mRNA_M-pyrifera_M_contig108003.1701.1 vs. uniprot
Match: A0A1F8NIW9_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium RBG_13_68_17 TaxID=1797638 RepID=A0A1F8NIW9_9CHLR)

HSP 1 Score: 67.0 bits (162), Expect = 1.570e-11
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 FLNAFLLEVANIDAVWVGNIQLVKQFYDAITDPMVGRLSDRTVTRWGRRKPFVVLFALP 177
            FLNAFLL+VA +     G I L+ + +DA+ DP++G LSDRT TRWGRR+P+++  A+P
Sbjct:   45 FLNAFLLDVAGLRPAAAGAIFLIVKIWDAVNDPLMGFLSDRTRTRWGRRRPWLLFAAVP 103
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BLAST of mRNA_M-pyrifera_M_contig108003.1701.1 vs. uniprot
Match: A0A524PHD7_9CHLR (MFS transporter n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524PHD7_9CHLR)

HSP 1 Score: 66.6 bits (161), Expect = 2.140e-11
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 FLNAFLLEVANIDAVWVGNIQLVKQFYDAITDPMVGRLSDRTVTRWGRRKPFVVLFALP 177
            FLNAFLL+VA +     G I L+ + +DA+ DPM+G L+DRT +RWGRR+P+++  A+P
Sbjct:   35 FLNAFLLDVAGLRPATAGLIFLLVKIWDAVNDPMIGMLTDRTRSRWGRRRPWLLFAAIP 93
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BLAST of mRNA_M-pyrifera_M_contig108003.1701.1 vs. uniprot
Match: A0A7V6P225_9CLOT (MFS transporter n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7V6P225_9CLOT)

HSP 1 Score: 65.9 bits (159), Expect = 4.000e-11
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 FLNAFLLEVANIDAVWVGNIQLVKQFYDAITDPMVGRLSDRTVTRWGRRKPFVVLFALP 177
            FL  +L +V  I+  WVG   LV + +DAI DP +G +SD+T T+WGRR+PF++ FA+P
Sbjct:   30 FLLFYLSDVVKINPGWVGIALLVAKLWDAIIDPFIGNISDKTDTKWGRRRPFLLYFAIP 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig108003.1701.1 vs. uniprot
Match: A0A3A0ATK5_9CHLR (MFS transporter (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0ATK5_9CHLR)

HSP 1 Score: 65.5 bits (158), Expect = 5.270e-11
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    1 FLNAFLLEVANIDAVWVGNIQLVKQFYDAITDPMVGRLSDRTVTRWGRRKPFVVLFALP 177
            FL  F  +VA +D    G I L+ + +DA  DP VG LSDRTVTRWGRR+P++   ALP
Sbjct:   35 FLLIFFTDVARLDPAMAGMILLINRIWDAFNDPFVGWLSDRTVTRWGRRRPWIFAGALP 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig108003.1701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q27PT0_VERVE3.260e-1250.85Sodium:galactoside symporter-like protein (Fragmen... [more]
A0A7C1I9E2_9CHLR4.470e-1252.54MFS transporter n=1 Tax=Chloroflexi bacterium TaxI... [more]
A0A3A0AX34_9CHLR8.380e-1252.54MFS transporter n=1 Tax=Chloroflexi bacterium TaxI... [more]
A0A2E0ZNK9_9CHLR1.150e-1152.54MFS transporter n=1 Tax=Anaerolineaceae bacterium ... [more]
UPI0019E89B491.150e-1152.73MFS transporter n=1 Tax=Leptolyngbyaceae cyanobact... [more]
A0A7S4L353_9EUKA1.330e-1151.85Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A1F8NIW9_9CHLR1.570e-1152.54Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A524PHD7_9CHLR2.140e-1150.85MFS transporter n=1 Tax=Anaerolineales bacterium T... [more]
A0A7V6P225_9CLOT4.000e-1149.15MFS transporter n=1 Tax=Clostridiaceae bacterium T... [more]
A0A3A0ATK5_9CHLR5.270e-1152.54MFS transporter (Fragment) n=1 Tax=Chloroflexi bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig108003contigM-pyrifera_M_contig108003:1..177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score67.0
Seed ortholog evalue3.3e-09
Seed eggNOG ortholog192875.XP_004365944.1
Preferred nameMFSD2A
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005319,GO:0005342,GO:0005548,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006629,GO:0006644,GO:0006650,GO:0006656,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0010876,GO:0015075,GO:0015245,GO:0015291,GO:0015293,GO:0015318,GO:0015711,GO:0015718,GO:0015748,GO:0015849,GO:0015908,GO:0015914,GO:0016020,GO:0016021,GO:0016192,GO:0019637,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0022804,GO:0022857,GO:0030154,GO:0030900,GO:0031224,GO:0031226,GO:0032501,GO:0032502,GO:0033036,GO:0034220,GO:0035633,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044425,GO:0044459,GO:0044464,GO:0045017,GO:0045056,GO:0046470,GO:0046474,GO:0046486,GO:0046942,GO:0046943,GO:0048468,GO:0048513,GO:0048731,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051977,GO:0051978,GO:0055085,GO:0060322,GO:0060856,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0071944,GO:0090407,GO:0097164,GO:0098656,GO:1901264,GO:1901564,GO:1901566,GO:1901576,GO:1903825,GO:1905039,GO:1990379
EggNOG free text desc.major facilitator superfamily
EggNOG OGs38F8C@33154,COG2211@1,KOG4830@2759
COG Functional cat.G
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.7220283-CDS-M-pyrifera_M_contig108003:0..1771622815589.7220283-CDS-M-pyrifera_M_contig108003:0..177Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108003 1..177 +
1692277477.2016404-CDS-M-pyrifera_M_contig108003:0..1771692277477.2016404-CDS-M-pyrifera_M_contig108003:0..177Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig108003 1..177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig108003.1701.1prot_M-pyrifera_M_contig108003.1701.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig108003 1..177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig108003.1701.1

>prot_M-pyrifera_M_contig108003.1701.1 ID=prot_M-pyrifera_M_contig108003.1701.1|Name=mRNA_M-pyrifera_M_contig108003.1701.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
FLNAFLLEVANIDAVWVGNIQLVKQFYDAITDPMVGRLSDRTVTRWGRRK
PFVVLFALP
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mRNA from alignment at M-pyrifera_M_contig108003:1..177+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig108003.1701.1 ID=mRNA_M-pyrifera_M_contig108003.1701.1|Name=mRNA_M-pyrifera_M_contig108003.1701.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig108003:1..177+ (Macrocystis pyrifera P11B4 male)
TTCCTCAACGCCTTCCTCCTGGAGGTGGCCAACATCGACGCCGTCTGGGT
GGGCAACATCCAGCTCGTCAAGCAGTTCTACGACGCCATCACTGACCCCA
TGGTCGGCCGCCTCTCCGACCGCACCGTCACCCGCTGGGGCCGCAGGAAG
CCCTTCGTCGTCTTATTCGCCCTACCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig108003:1..177+

>mRNA_M-pyrifera_M_contig108003.1701.1 ID=mRNA_M-pyrifera_M_contig108003.1701.1|Name=mRNA_M-pyrifera_M_contig108003.1701.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig108003:1..177+ (Macrocystis pyrifera P11B4 male)
TTCCTCAACGCCTTCCTCCTGGAGGTGGCCAACATCGACGCCGTCTGGGT
GGGCAACATCCAGCTCGTCAAGCAGTTCTACGACGCCATCACTGACCCCA
TGGTCGGCCGCCTCTCCGACCGCACCGTCACCCGCTGGGGCCGCAGGAAG
CCCTTCGTCGTCTTATTCGCCCTACCTTTCCTCAACGCCTTCCTCCTGGA
GGTGGCCAACATCGACGCCGTCTGGGTGGGCAACATCCAGCTCGTCAAGC
AGTTCTACGACGCCATCACTGACCCCATGGTCGGCCGCCTCTCCGACCGC
ACCGTCACCCGCTGGGGCCGCAGGAAGCCCTTCGTCGTCTTATTCGCCCT
ACCT
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