mRNA_M-pyrifera_M_contig107988.1697.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107988.1697.1
Unique NamemRNA_M-pyrifera_M_contig107988.1697.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107988.1697.1 vs. uniprot
Match: A0A6H5KW44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW44_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.190e-25
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1
Query:    1 IRERMLGAINGTSPLKFVLISGHDTTLIPFLAAVAPSAWDKTWPPYAALASIELLRVGAGG 183
            IRERM  A+NGTSPLKFVL+SGHDTT IPF+AAVAP AWD TWP YA LASIELLR+G GG
Sbjct:  337 IRERMAAAMNGTSPLKFVLLSGHDTTFIPFMAAVAPLAWDGTWPRYATLASIELLRIGGGG 397          
BLAST of mRNA_M-pyrifera_M_contig107988.1697.1 vs. uniprot
Match: A0A482RVD1_9ARCH (Histidine-type phosphatase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVD1_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 1.360e-9
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    1 IRERMLGAINGTS-PLKFVLISGHDTTLIPFLAAVAPSAWDKTWPPYAALASIELLRVGAGG 183
            IR  +   +N  S  LKF L  GHDTT++P LAA+    WD  WP YA++ SIE+    AGG
Sbjct:  319 IRNNIEAILNNQSYALKFALFGGHDTTIMPLLAAILGEDWDMVWPGYASMISIEIYNATAGG 380          
BLAST of mRNA_M-pyrifera_M_contig107988.1697.1 vs. uniprot
Match: A0A7S3GTC4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTC4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.550e-9
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    1 IRERMLGAING-------TSPLKFVLISGHDTTLIPFLAAVAPSAWDKTWPPYAALASIELLR------VGAGG 183
            +R  +L  I+G       T+PLKF L S HDT+L+PFLAAV    WD  W  YA L S+EL        +GAGG
Sbjct:  332 MRNNLLNIISGGTSSARSTTPLKFALFSAHDTSLMPFLAAVLGDVWDGRWAGYAYLVSMELYSASAASPLGAGG 405          
BLAST of mRNA_M-pyrifera_M_contig107988.1697.1 vs. uniprot
Match: A0A421F1A2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F1A2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.030e-8
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   22 AINGTSPL-KFVLISGHDTTLIPFLAAVAPSAWDKTWPPYAALASIELLRVGAG 180
            A+NG   + K  +   HD+TL+PF+AAVA   WD+TW PYA + +IEL +  AG
Sbjct:  338 ALNGGPDVYKLSVTMAHDSTLMPFIAAVAKENWDRTWTPYAGMLAIELYKTKAG 391          
BLAST of mRNA_M-pyrifera_M_contig107988.1697.1 vs. uniprot
Match: A0A7S2XXG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXG6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.040e-7
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1
Query:   46 KFVLISGHDTTLIPFLAAVAPSAWDKTWPPYAALASIEL 162
            KF L SGHD+T++P LAA+AP  WD  W PYA+L   EL
Sbjct:   85 KFALYSGHDSTVMPLLAALAPEEWDGAWAPYASLLVFEL 123          
BLAST of mRNA_M-pyrifera_M_contig107988.1697.1 vs. uniprot
Match: A0A0L0S2B8_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S2B8_ALLM3)

HSP 1 Score: 54.7 bits (130), Expect = 3.540e-7
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1
Query:   22 AINGTSPLKFVLISGHDTTLIPFLAAVAPSAWDKTWPPYAALASIELLR 168
            A   T+P +  L SGHDTTL+P +AA+   AWD TWPP+A+  ++EL +
Sbjct:  203 ASGATTPPRLALYSGHDTTLVPLVAALG--AWDHTWPPFASHLTLELFQ 249          
BLAST of mRNA_M-pyrifera_M_contig107988.1697.1 vs. uniprot
Match: W7TZ97_9STRA (Component of the counting factor complex n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZ97_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.790e-7
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 1
Query:    7 ERMLGAINGTSPLKFVLISGHDTTLIPFLAAVAPSAWDKTWPPYAALASIELLRVGAGG 183
            E M     G S LKF L  GHDT+++P LAA     WD  WPPYAA+ ++EL      G
Sbjct:  324 ENMQARAGGRSHLKFGLFLGHDTSVLPLLAAWG--VWDGAWPPYAAVLAVELYAADGTG 380          
BLAST of mRNA_M-pyrifera_M_contig107988.1697.1 vs. uniprot
Match: A0A4D9D9C0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9C0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.830e-7
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 1
Query:    7 ERMLGAINGTSPLKFVLISGHDTTLIPFLAAVAPSAWDKTWPPYAALASIELLRVGAGG 183
            E M     G S LKF L  GHDT+++P LAA     WD  WPPYAA+ ++EL      G
Sbjct:  361 ENMQARAGGRSHLKFGLFLGHDTSVLPLLAAWG--VWDGAWPPYAAVLAVELYAADGTG 417          
BLAST of mRNA_M-pyrifera_M_contig107988.1697.1 vs. uniprot
Match: B6AC91_CRYMR (Histidine acid phosphatase family protein n=2 Tax=Cryptosporidium TaxID=5806 RepID=B6AC91_CRYMR)

HSP 1 Score: 54.7 bits (130), Expect = 3.830e-7
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   46 KFVLISGHDTTLIPFLAAVAPSAWDKTWPPYAALASIELLR 168
            KF+L SGHDTT+IP +AA+    WDK WPPYA+   IEL R
Sbjct:  446 KFILWSGHDTTIIPTMAAI--KVWDKKWPPYASSFIIELYR 484          
BLAST of mRNA_M-pyrifera_M_contig107988.1697.1 vs. uniprot
Match: A0A0L0RXW4_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0RXW4_ALLM3)

HSP 1 Score: 53.1 bits (126), Expect = 1.280e-6
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   28 NGTS-PLKFVLISGHDTTLIPFLAAVAPSAWDKTWPPYAALASIELLR 168
            +GT+ P +F L SGHDTTL+P +AA+    WD TWPP+A+  ++EL +
Sbjct:  199 SGTAKPPRFALYSGHDTTLVPLMAALG--VWDHTWPPFASHLTLELFQ 244          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107988.1697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KW44_9PHAE3.190e-2580.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482RVD1_9ARCH1.360e-946.77Histidine-type phosphatase n=1 Tax=archaeon TaxID=... [more]
A0A7S3GTC4_9STRA2.550e-945.95Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A421F1A2_9STRA8.030e-848.15Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A7S2XXG6_9STRA2.040e-758.97Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0L0S2B8_ALLM33.540e-748.98Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
W7TZ97_9STRA3.790e-745.76Component of the counting factor complex n=1 Tax=N... [more]
A0A4D9D9C0_9STRA3.830e-745.76Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
B6AC91_CRYMR3.830e-760.98Histidine acid phosphatase family protein n=2 Tax=... [more]
A0A0L0RXW4_ALLM31.280e-650.00Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107988contigM-pyrifera_M_contig107988:267..449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.5029552-CDS-M-pyrifera_M_contig107988:266..4371622815589.5029552-CDS-M-pyrifera_M_contig107988:266..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107988 267..437 -
1692277477.0989363-CDS-M-pyrifera_M_contig107988:266..4371692277477.0989363-CDS-M-pyrifera_M_contig107988:266..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107988 267..437 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.5198505-UTR-M-pyrifera_M_contig107988:437..4491622815589.5198505-UTR-M-pyrifera_M_contig107988:437..449Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107988 438..449 -
1692277477.1066859-UTR-M-pyrifera_M_contig107988:437..4491692277477.1066859-UTR-M-pyrifera_M_contig107988:437..449Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107988 438..449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107988.1697.1prot_M-pyrifera_M_contig107988.1697.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107988 267..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107988.1697.1

>prot_M-pyrifera_M_contig107988.1697.1 ID=prot_M-pyrifera_M_contig107988.1697.1|Name=mRNA_M-pyrifera_M_contig107988.1697.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
MLGAINGTSPLKFVLISGHDTTLIPFLAAVAPSAWDKTWPPYAALASIEL
LRVGAGG
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mRNA from alignment at M-pyrifera_M_contig107988:267..449-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107988.1697.1 ID=mRNA_M-pyrifera_M_contig107988.1697.1|Name=mRNA_M-pyrifera_M_contig107988.1697.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig107988:267..449- (Macrocystis pyrifera P11B4 male)
ATTCGAGAGCGCATGCTGGGAGCCATCAACGGAACTTCCCCCTTAAAATT CGTCCTGATATCCGGACACGACACCACCCTCATCCCCTTTCTCGCTGCGG TGGCGCCTTCCGCTTGGGACAAAACATGGCCTCCCTACGCTGCCCTCGCC TCCATCGAGCTGCTGCGCGTTGGTGCTGGGGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107988:267..449-

>mRNA_M-pyrifera_M_contig107988.1697.1 ID=mRNA_M-pyrifera_M_contig107988.1697.1|Name=mRNA_M-pyrifera_M_contig107988.1697.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig107988:267..449- (Macrocystis pyrifera P11B4 male)
ATGCTGGGAGCCATCAACGGAACTTCCCCCTTAAAATTCGTCCTGATATC
CGGACACGACACCACCCTCATCCCCTTTCTCGCTGCGGTGGCGCCTTCCG
CTTGGGACAAAACATGGCCTCCCTACGCTGCCCTCGCCTCCATCGAGCTG
CTGCGCGTTGGTGCTGGGGGTATGCTGGGAGCCATCAACGGAACTTCCCC
CTTAAAATTCGTCCTGATATCCGGACACGACACCACCCTCATCCCCTTTC
TCGCTGCGGTGGCGCCTTCCGCTTGGGACAAAACATGGCCTCCCTACGCT
GCCCTCGCCTCCATCGAGCTGCTGCGCGTTGGTGCTGGGGGT
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