mRNA_M-pyrifera_M_contig107924.1691.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107924.1691.1
Unique NamemRNA_M-pyrifera_M_contig107924.1691.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107924.1691.1 vs. uniprot
Match: A0A7V2Y2K1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y2K1_9BACT)

HSP 1 Score: 187 bits (475), Expect = 3.220e-58
Identity = 81/106 (76.42%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    1 FTVSSTFAGSQAGGGDTIFRLRDGIERFLITDINNPAASAQASSEVPTVWDHISTNVADFAHVPGGGNVLYLDGHVEYVRYPGDRFPMTEDSARIFGRYDRPFDGF 318
            F VS T AG+QAGGG+T++RLR GIERF ITDINNPAA+A+A+S +P +WDHIST+ ADF+HVPGGGNVLY+DGHVE++RYP +RFPMT DSARIFGRYDRPFDGF
Sbjct:  116 FVVSQTHAGTQAGGGNTMYRLRQGIERFFITDINNPAATAEAASVIPVMWDHISTSTADFSHVPGGGNVLYMDGHVEFLRYPAERFPMTPDSARIFGRYDRPFDGF 221
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BLAST of mRNA_M-pyrifera_M_contig107924.1691.1 vs. uniprot
Match: A0A7Y5CEX0_9BACT (DUF1559 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CEX0_9BACT)

HSP 1 Score: 175 bits (444), Expect = 1.450e-52
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 FTVSSTFAGSQAGGGDTIFRLRDGIERFLITDINNPAASAQASSEVPTVWDHISTNVADFAHVPGGGNVLYLDGHVEYVRYPGDRFPMTEDSARIFGRYDRPFDGF 318
            F VS+T+AG+QAGG + I RLRDGIERF+ITDIN+PAAS+ ASS+VP +WDH +T V D++HVPGGGNVLYLDGHVEY++YP DRFP T DSAR  GRY RPFDGF
Sbjct:  192 FAVSATYAGTQAGGSNVIRRLRDGIERFMITDINSPAASSMASSDVPLMWDHATTKVIDYSHVPGGGNVLYLDGHVEYLKYPADRFPFTVDSARTLGRYGRPFDGF 297
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BLAST of mRNA_M-pyrifera_M_contig107924.1691.1 vs. uniprot
Match: A0A7V2X843_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2X843_9BACT)

HSP 1 Score: 169 bits (429), Expect = 4.650e-51
Identity = 75/106 (70.75%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 FTVSSTFAGSQAGGGDTIFRLRDGIERFLITDINNPAASAQASSEVPTVWDHISTNVADFAHVPGGGNVLYLDGHVEYVRYPGDRFPMTEDSARIFGRYDRPFDGF 318
            FTV   F G+QAGGG+ I+RLR+GIERFLITDINNP +SA A S VP +WDHI+T   DF H+PGG NVLYLDGHVE++RYP DRFP+T +SAR FGRY+RPFDGF
Sbjct:  130 FTVPPAFQGTQAGGGNVIYRLREGIERFLITDINNPGSSATAQSVVPVLWDHITTATKDFNHLPGGTNVLYLDGHVEFLRYPADRFPVTVNSARTFGRYNRPFDGF 235
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BLAST of mRNA_M-pyrifera_M_contig107924.1691.1 vs. uniprot
Match: A0A1V5YWR7_9BACT (Type II secretion system protein G n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5YWR7_9BACT)

HSP 1 Score: 165 bits (418), Expect = 1.450e-48
Identity = 77/106 (72.64%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:    1 FTVSSTFAGSQAGGGDTIFRLRDGIERFLITDINNPAASAQASSEVPTVWDHISTNVADFAHVPGGGNVLYLDGHVEYVRYPGDRFPMTEDSARIFGRYDRPFDGF 318
            F VS  F G+Q G G+TI+RLR GIERFLITDINNPAASAQA+S VP +WDHISTN  DFAHVPGG NVLY+DGHV +  YPG RFPMT DSARI GRY+  F GF
Sbjct:  199 FRVSLLFNGTQTGEGNTIYRLRQGIERFLITDINNPAASAQAASTVPVMWDHISTNTIDFAHVPGGANVLYMDGHVLFHTYPGTRFPMTVDSARIMGRYNSAFAGF 304
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BLAST of mRNA_M-pyrifera_M_contig107924.1691.1 vs. uniprot
Match: A0A1V6EST1_9BACT (Type II secretion system protein G n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin101 TaxID=1852847 RepID=A0A1V6EST1_9BACT)

HSP 1 Score: 163 bits (412), Expect = 1.280e-47
Identity = 70/106 (66.04%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 FTVSSTFAGSQAGGGDTIFRLRDGIERFLITDINNPAASAQASSEVPTVWDHISTNVADFAHVPGGGNVLYLDGHVEYVRYPGDRFPMTEDSARIFGRYDRPFDGF 318
            F VS T+AG+QAGGG+TI+RLR+GIERFLI+D+++ AAS    S +P +WDH+S N  DF+H+PGGGNVLYLDGH E++ YPG RFPMTEDSA   GRY +PFDGF
Sbjct:  203 FEVSDTYAGTQAGGGNTIYRLREGIERFLISDVHSAAASTLTYSAIPLMWDHVSANPKDFSHIPGGGNVLYLDGHSEFLVYPGKRFPMTEDSAYTLGRYGKPFDGF 308
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BLAST of mRNA_M-pyrifera_M_contig107924.1691.1 vs. uniprot
Match: A0A2A5E4Z2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A2A5E4Z2_9BACT)

HSP 1 Score: 155 bits (392), Expect = 1.090e-44
Identity = 69/105 (65.71%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 FTVSSTFAGSQAGGGDTIFRLRDGIERFLITDINNPAASAQASSEVPTVWDHISTNVADFAHVPGGGNVLYLDGHVEYVRYPGDRFPMTEDSARIFGRYDRPFDG 315
            F VSST+ G+QA GG  + RLR GIERFLITDINN   +  AS+ VP +WDH+ST V DF+H PGGGNVLYLDGHVE++RYP D FP T DS R  GRY +PFDG
Sbjct:  196 FQVSSTYEGTQALGGSILARLRQGIERFLITDINNAGGAVSASTVVPLMWDHVSTKVIDFSHAPGGGNVLYLDGHVEFLRYPSDLFPFTMDSXRTMGRYGKPFDG 300
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BLAST of mRNA_M-pyrifera_M_contig107924.1691.1 vs. uniprot
Match: A0A7V2Y577_9BACT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y577_9BACT)

HSP 1 Score: 131 bits (330), Expect = 2.280e-35
Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 FTVSSTFAGSQAGGGDTIFRLRDGIERFLITDINNPAASAQASSEVPTVWDHISTNVADFAHVPGGGNVLYLDGHVEYVRYPGDR-FPMTEDSARIFGRYDRPFDG 315
            F VS  FAG+Q GGGDT +R+R+GIERFL+TDIN+PAA++ A +E+P +WDH++  +    HVP G NVLY+DGHV +  YP  + +  T +  RI GRYDR F G
Sbjct:  199 FKVSEAFAGTQIGGGDTYYRIREGIERFLVTDINDPAATSSAQTEIPVMWDHLTGQITGSCHVPAGMNVLYMDGHVAWAAYPSPKPWMATIEGPRIIGRYDRRFGG 304
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BLAST of mRNA_M-pyrifera_M_contig107924.1691.1 vs. uniprot
Match: A0A7C3ACI3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3ACI3_9BACT)

HSP 1 Score: 124 bits (311), Expect = 7.270e-34
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:   40 GGDTIFRLRDGIERFLITDINNPAASAQASSEVPTVWDHISTNVADFAHVPGGGNVLYLDGHVEYVRYPGDRFPMTEDSARI 285
            GGDT++RLR+GIERFLITDINNPAASAQA S +P +WD +S  +  F HVPGG NVL++DGHVE+ RYPG + P+T++ A I
Sbjct:   96 GGDTVYRLREGIERFLITDINNPAASAQAQSTLPIMWDIVSAKIKSFNHVPGGSNVLFMDGHVEFQRYPGQKGPVTQEIAII 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig107924.1691.1 vs. uniprot
Match: A0A847GGK7_9BACT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847GGK7_9BACT)

HSP 1 Score: 123 bits (308), Expect = 6.400e-32
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:   19 FAGSQA----GGGDTIFRLRDGIERFLITDINNPAASAQASSEVPTVWDHISTNVADFAHVPGGGNVLYLDGHVEYVRYPGDRFPMTEDSARIFG 291
            F+G Q     GG +T++RLR+GIERFL+TDINNPAASA+A SE+  +WDHI T VADF H PGG NVLY+DGHVE++RYPG R P     A++ G
Sbjct:  227 FSGPQGYNGNGGMETVYRLREGIERFLVTDINNPAASARAQSEIYILWDHIRTQVADFNHAPGGANVLYMDGHVEFLRYPG-RPPAGRTLAKMTG 320
[Close]
BLAST of mRNA_M-pyrifera_M_contig107924.1691.1 vs. uniprot
Match: A0A7C1CL84_9BACT (Type II secretion system protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1CL84_9BACT)

HSP 1 Score: 120 bits (302), Expect = 4.320e-31
Identity = 56/93 (60.22%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   22 AGSQAGGGDTIFRLRDGIERFLITDINNPAASAQASSEVPTVWDHISTNVADFAHVPGGGNVLYLDGHVEYVRYPGDRFPMTEDSARIFGRYD 300
            AG+  GGG+TI+RLR+GIERFLITDINNPAASA+A S +  +WD+ S++VA F HVPGG NVL++DGHVE+ RYPG+  P+T+  A+    +D
Sbjct:  220 AGAGNGGGNTIYRLREGIERFLITDINNPAASAKAQSAIFIMWDNASSDVARFNHVPGGSNVLFMDGHVEFRRYPGEP-PLTKTLAQALHLFD 311
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107924.1691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V2Y2K1_9BACT3.220e-5876.42Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7Y5CEX0_9BACT1.450e-5272.64DUF1559 domain-containing protein n=1 Tax=Candidat... [more]
A0A7V2X843_9BACT4.650e-5170.75Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1V5YWR7_9BACT1.450e-4872.64Type II secretion system protein G n=1 Tax=Candida... [more]
A0A1V6EST1_9BACT1.280e-4766.04Type II secretion system protein G n=1 Tax=Candida... [more]
A0A2A5E4Z2_9BACT1.090e-4465.71Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7V2Y577_9BACT2.280e-3553.77Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A7C3ACI3_9BACT7.270e-3464.63Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A847GGK7_9BACT6.400e-3261.05Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A7C1CL84_9BACT4.320e-3160.22Type II secretion system protein n=1 Tax=Candidatu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107924contigM-pyrifera_M_contig107924:3..323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.1459665-CDS-M-pyrifera_M_contig107924:2..3231622815589.1459665-CDS-M-pyrifera_M_contig107924:2..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107924 3..323 +
1692277476.996623-CDS-M-pyrifera_M_contig107924:2..3231692277476.996623-CDS-M-pyrifera_M_contig107924:2..323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107924 3..323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107924.1691.1prot_M-pyrifera_M_contig107924.1691.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107924 3..323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107924.1691.1

>prot_M-pyrifera_M_contig107924.1691.1 ID=prot_M-pyrifera_M_contig107924.1691.1|Name=mRNA_M-pyrifera_M_contig107924.1691.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
FTVSSTFAGSQAGGGDTIFRLRDGIERFLITDINNPAASAQASSEVPTVW
DHISTNVADFAHVPGGGNVLYLDGHVEYVRYPGDRFPMTEDSARIFGRYD
RPFDGF*
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mRNA from alignment at M-pyrifera_M_contig107924:3..323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107924.1691.1 ID=mRNA_M-pyrifera_M_contig107924.1691.1|Name=mRNA_M-pyrifera_M_contig107924.1691.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig107924:3..323+ (Macrocystis pyrifera P11B4 male)
TTTACTGTTTCTAGTACCTTCGCTGGCTCCCAAGCTGGCGGGGGTGACAC
CATCTTCAGATTGCGTGATGGCATCGAACGTTTCCTCATCACGGACATCA
ACAACCCGGCCGCGAGCGCCCAAGCATCCAGCGAAGTACCGACTGTATGG
GACCACATTAGTACCAACGTGGCTGATTTTGCGCATGTCCCCGGCGGCGG
CAACGTTCTATACCTAGATGGCCACGTTGAATACGTTCGGTACCCTGGCG
ATAGGTTCCCCATGACAGAGGACAGTGCGCGGATTTTTGGCCGGTATGAT
CGTCCATTTGACGGGTTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107924:3..323+

>mRNA_M-pyrifera_M_contig107924.1691.1 ID=mRNA_M-pyrifera_M_contig107924.1691.1|Name=mRNA_M-pyrifera_M_contig107924.1691.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig107924:3..323+ (Macrocystis pyrifera P11B4 male)
TTTACTGTTTCTAGTACCTTCGCTGGCTCCCAAGCTGGCGGGGGTGACAC
CATCTTCAGATTGCGTGATGGCATCGAACGTTTCCTCATCACGGACATCA
ACAACCCGGCCGCGAGCGCCCAAGCATCCAGCGAAGTACCGACTGTATGG
GACCACATTAGTACCAACGTGGCTGATTTTGCGCATGTCCCCGGCGGCGG
CAACGTTCTATACCTAGATGGCCACGTTGAATACGTTCGGTACCCTGGCG
ATAGGTTCCCCATGACAGAGGACAGTGCGCGGATTTTTGGCCGGTATGAT
CGTCCATTTGACGGGTTCTAGTTTACTGTTTCTAGTACCTTCGCTGGCTC
CCAAGCTGGCGGGGGTGACACCATCTTCAGATTGCGTGATGGCATCGAAC
GTTTCCTCATCACGGACATCAACAACCCGGCCGCGAGCGCCCAAGCATCC
AGCGAAGTACCGACTGTATGGGACCACATTAGTACCAACGTGGCTGATTT
TGCGCATGTCCCCGGCGGCGGCAACGTTCTATACCTAGATGGCCACGTTG
AATACGTTCGGTACCCTGGCGATAGGTTCCCCATGACAGAGGACAGTGCG
CGGATTTTTGGCCGGTATGATCGTCCATTTGACGGGTTCTAG
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