mRNA_M-pyrifera_M_contig107916.1687.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107916.1687.1
Unique NamemRNA_M-pyrifera_M_contig107916.1687.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107916.1687.1 vs. uniprot
Match: A0A2T9YUX3_9FUNG (ATPase GET3 n=2 Tax=Harpellales TaxID=61421 RepID=A0A2T9YUX3_9FUNG)

HSP 1 Score: 211 bits (537), Expect = 1.360e-64
Identity = 109/206 (52.91%), Postives = 136/206 (66.02%), Query Frame = 1
Query:    1 LSCMEIDPAGALEEA-GAGEGGLMXXXXXXXXXXLPGIDEAMGFAELMRSVADASFSVVVFDTAPTGHTLRMLQVPRVMSAALEKLEGLRSSFGGMFEALSGSLGMEGGVGEMAEKMLAMREGVERVIEQFRDPTLTTFVCVCIPEFLSLYETERLVQELARLDIDARNIVVNQILAPDPKGHCKVCAARLKMQQKYLDQIHLLYQ 615
            L CMEIDP G+++E     EGG M          +PG+DEAMGFAE+M+ + +  +SV++FDTAPTGHTLR L  P V+  AL K+  L   FG M + +SG +G+     +M  K+ +MRE +  V  QF+DP  TTFVCVCIPEFLSLYETERL+QEL   DID  NIVVNQ+L P     C+ C  R KMQQKYL QIH LY+
Sbjct:   85 LYCMEIDPTGSIQEMLENSEGGAMNSIMQDLAFAIPGVDEAMGFAEVMKLIKNMEYSVIIFDTAPTGHTLRFLSFPTVLEKALSKVSQLSGRFGPMMQQMSGIMGVNADQEDMFAKLESMREVINEVNTQFQDPNKTTFVCVCIPEFLSLYETERLIQELTADDIDTHNIVVNQLLFPPKNSTCEQCIVRQKMQQKYLSQIHDLYE 290          
BLAST of mRNA_M-pyrifera_M_contig107916.1687.1 vs. uniprot
Match: D5GGF4_TUBMM (ATPase GET3 n=5 Tax=Tuberaceae TaxID=40289 RepID=D5GGF4_TUBMM)

HSP 1 Score: 205 bits (521), Expect = 4.380e-62
Identity = 107/208 (51.44%), Postives = 136/208 (65.38%), Query Frame = 1
Query:    1 LSCMEIDPAGALEEAGAGEGGL---MXXXXXXXXXXLPGIDEAMGFAELMRSVADASFSVVVFDTAPTGHTLRMLQVPRVMSAALEKLEGLRSSFGGMFEALSGSLGMEGGVGEMAEKMLAMREGVERVIEQFRDPTLTTFVCVCIPEFLSLYETERLVQELARLDIDARNIVVNQILAPDPKGHCKVCAARLKMQQKYLDQIHLLYQ 615
            LS MEIDP G+++E   G  G    +          +PG+DEAM FAE+++ V   S+S +VFDTAPTGHTLR LQ P V+  AL K+  L   FG M   + G+ G  GGV EM +KM  MRE +  V +QF+DP LTTF+CVCIPEFLSLYETER++QEL    ID  +IVVNQ+L P     C+ C AR +MQ+KYL+QI  LY+
Sbjct:   89 LSAMEIDPNGSIQELIEGAEGSQNPLGNMMQDLAFSIPGVDEAMSFAEVLKQVKSLSYSTIVFDTAPTGHTLRFLQFPAVLEKALSKISQLSGKFGPMLNGILGAQGGPGGVDEMMQKMEGMREVIGEVSKQFKDPDLTTFICVCIPEFLSLYETERMIQELNNYQIDTHSIVVNQLLFPQKGSTCEQCTARRRMQKKYLEQIEELYE 296          
BLAST of mRNA_M-pyrifera_M_contig107916.1687.1 vs. uniprot
Match: A0A2T9XXE5_9FUNG (ATPase GET3 n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9XXE5_9FUNG)

HSP 1 Score: 204 bits (518), Expect = 1.050e-61
Identity = 104/206 (50.49%), Postives = 136/206 (66.02%), Query Frame = 1
Query:    1 LSCMEIDPAGALEEAGAG-EGGLMXXXXXXXXXXLPGIDEAMGFAELMRSVADASFSVVVFDTAPTGHTLRMLQVPRVMSAALEKLEGLRSSFGGMFEALSGSLGMEGGVGEMAEKMLAMREGVERVIEQFRDPTLTTFVCVCIPEFLSLYETERLVQELARLDIDARNIVVNQILAPDPKGHCKVCAARLKMQQKYLDQIHLLYQ 615
            L CMEIDP G+++E   G E   M          +PG+DEAMGF+E+M+ +    +SV++FDTAPTGHTLR L  P V+  AL K+  L   FG M + +SG +G+     ++ EK+  M+E ++ V  QF+DP  TTFVCVCIPEFLSLYETERL+QEL    ID  NIVVNQ+L P    +C+ C  R KMQ+KYLDQI+ LY+
Sbjct:   87 LYCMEIDPNGSIQEMIEGSESSAMNSIMQDLAFAIPGVDEAMGFSEVMKLIKSLEYSVIIFDTAPTGHTLRFLSFPTVLGKALGKISQLSGRFGPMMQQMSGMMGVNADQQDIFEKLQGMKEVIDEVNNQFKDPNKTTFVCVCIPEFLSLYETERLIQELTADGIDTHNIVVNQLLFPPKTSNCEQCLVRQKMQRKYLDQIYDLYE 292          
BLAST of mRNA_M-pyrifera_M_contig107916.1687.1 vs. uniprot
Match: I3T558_LOTJA (ArsA_ATPase domain-containing protein n=2 Tax=NPAAA clade TaxID=2231382 RepID=I3T558_LOTJA)

HSP 1 Score: 200 bits (509), Expect = 4.950e-61
Identity = 103/203 (50.74%), Postives = 139/203 (68.47%), Query Frame = 1
Query:   10 MEIDPAGALEEAGAGEGGLMXXXXXXXXXXLPGIDEAMGFAELMRSVADASFSVVVFDTAPTGHTLRMLQVPRVMSAALEKLEGLRSSFGGMFEALSGSLGMEGGVGEMA--EKMLAMREGVERVIEQFRDPTLTTFVCVCIPEFLSLYETERLVQELARLDIDARNIVVNQILAPDPKGHCKVCAARLKMQQKYLDQIHLLY 612
            ME+DPA   E+ G+ +G  M          +PGIDEAM FAE+++ V    +SV+VFDTAPTGHTLR+LQ P V+   L K+  L++ FGG+F  ++   GM    GE A   K+  M++ +E+V +QF+DP +TTFVCVCIPEFLSLYETERLVQEL + +ID  NI++NQ++  D     K+  AR+KMQQKYLDQ ++LY
Sbjct:    1 MEVDPAVEHEDMGSSDG--MDSLVSELAGAIPGIDEAMSFAEMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSVLEKGLAKMMSLKNKFGGLFNQMTRMFGMGDDFGEDAILGKLEGMKDVIEQVNKQFKDPDMTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVIFDDEDVESKLLKARMKMQQKYLDQFYMLY 201          
BLAST of mRNA_M-pyrifera_M_contig107916.1687.1 vs. uniprot
Match: A0A1R1Y7V8_9FUNG (ATPase GET3 n=3 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7V8_9FUNG)

HSP 1 Score: 202 bits (513), Expect = 7.610e-61
Identity = 110/217 (50.69%), Postives = 136/217 (62.67%), Query Frame = 1
Query:    1 LSCMEIDPAGALEEA-GAGEGGLMXXXXXXXXXXLPGIDEAMGFAELMRS-----------VADASFSVVVFDTAPTGHTLRMLQVPRVMSAALEKLEGLRSSFGGMFEALSGSLGMEGGVGEMAEKMLAMREGVERVIEQFRDPTLTTFVCVCIPEFLSLYETERLVQELARLDIDARNIVVNQILAPDPKGHCKVCAARLKMQQKYLDQIHLLYQ 615
            L CMEIDP G+++E   + + G M          +PG+DEAMGFAE+M S           + +  +SV++FDTAPTGHTLR L  P V+  AL K+  L   FG M + +SG +GM     +M  K+ +MR  +  V  QF+DP  TTFVCVCIPEFLSLYETERLVQEL   DID  NIVVNQ+L P     C+ C  R KMQQKYLDQIH LY+
Sbjct:   85 LYCMEIDPTGSIQEMIESSDAGAMNSIMQDLAFAIPGVDEAMGFAEVMNSPYLYKKNLYLLIKNMEYSVIIFDTAPTGHTLRFLSFPTVLEKALSKVSQLSGRFGPMVQQMSGMMGMNTDQEDMFAKLESMRAVINEVNTQFQDPKKTTFVCVCIPEFLSLYETERLVQELTADDIDTHNIVVNQLLFPPSDSTCQQCLVRHKMQQKYLDQIHDLYE 301          
BLAST of mRNA_M-pyrifera_M_contig107916.1687.1 vs. uniprot
Match: A0A162UUY1_PHYB8 (ATPase GET3 n=4 Tax=Mucoromycotina TaxID=451507 RepID=A0A162UUY1_PHYB8)

HSP 1 Score: 201 bits (510), Expect = 1.980e-60
Identity = 106/210 (50.48%), Postives = 132/210 (62.86%), Query Frame = 1
Query:    1 LSCMEIDPAGALEEA-----GAGEGGLMXXXXXXXXXXLPGIDEAMGFAELMRSVADASFSVVVFDTAPTGHTLRMLQVPRVMSAALEKLEGLRSSFGGMFEALSGSLGMEGGVGEMAEKMLAMREGVERVIEQFRDPTLTTFVCVCIPEFLSLYETERLVQELARLDIDARNIVVNQILAPDPKGHCKVCAARLKMQQKYLDQIHLLYQ 615
            L  MEIDP  +++E         +G  M          +PG+DEAMGFAE+M+ V   S+SVVVFDTAPTGHTLR L  P V+  AL K+  L   FG MF+ +SG +G+     +M  K+  MR  +  V  QF+DP  TTFVCVCI EFLSLYETER++QEL    ID  NIVVNQ+L P    +C+ C  R KMQQKYLDQI+ LY+
Sbjct:   88 LYAMEIDPTSSIQEMIEQCKSTDQGNAMGGMVQDLAYAIPGVDEAMGFAEVMKQVKTMSYSVVVFDTAPTGHTLRFLSFPTVLEKALAKISNLSGRFGPMFQQVSGMMGLNANQEDMFSKLEEMRSVITEVNNQFKDPNKTTFVCVCISEFLSLYETERMIQELTSYHIDTHNIVVNQLLFPKKGSNCEHCNVRYKMQQKYLDQIYDLYE 297          
BLAST of mRNA_M-pyrifera_M_contig107916.1687.1 vs. uniprot
Match: A0A0B7NN88_9FUNG (ATPase GET3 n=16 Tax=Mucorales TaxID=4827 RepID=A0A0B7NN88_9FUNG)

HSP 1 Score: 201 bits (510), Expect = 2.030e-60
Identity = 106/207 (51.21%), Postives = 133/207 (64.25%), Query Frame = 1
Query:    1 LSCMEIDPAGALEEA--GAGEGGLMXXXXXXXXXXLPGIDEAMGFAELMRSVADASFSVVVFDTAPTGHTLRMLQVPRVMSAALEKLEGLRSSFGGMFEALSGSLGMEGGVGEMAEKMLAMREGVERVIEQFRDPTLTTFVCVCIPEFLSLYETERLVQELARLDIDARNIVVNQILAPDPKGHCKVCAARLKMQQKYLDQIHLLYQ 615
            L  MEIDP  +++E    + +   M          +PG+DEAMGFAE+M+ V   S+SVVVFDTAPTGHTLR L  P V+  AL K+ GL S FG M + +SG +GM     +M  K+  MR  +  V  QF+DP  TTF+CVCI EFLSLYETER++QEL    ID  NIVVNQ+L P    +C+ C  R KMQQKYLDQI+ LY+
Sbjct:   88 LYAMEIDPTSSIQEMVEQSDQNNPMGGMMQDLAYAIPGVDEAMGFAEVMKQVKTMSYSVVVFDTAPTGHTLRFLSFPTVLEKALAKISGLSSRFGPMVQQVSGMMGMNANQEDMFSKLEEMRSVITEVNNQFKDPNTTTFICVCISEFLSLYETERMIQELTSYHIDTHNIVVNQLLFPKEGSNCEHCTVRNKMQQKYLDQIYDLYE 294          
BLAST of mRNA_M-pyrifera_M_contig107916.1687.1 vs. uniprot
Match: A0A4Q0A1G0_9FUNG (ATPase GET3 n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4Q0A1G0_9FUNG)

HSP 1 Score: 200 bits (509), Expect = 2.240e-60
Identity = 104/206 (50.49%), Postives = 134/206 (65.05%), Query Frame = 1
Query:    1 LSCMEIDPAGALEEA-GAGEGGLMXXXXXXXXXXLPGIDEAMGFAELMRSVADASFSVVVFDTAPTGHTLRMLQVPRVMSAALEKLEGLRSSFGGMFEALSGSLGMEGGVGEMAEKMLAMREGVERVIEQFRDPTLTTFVCVCIPEFLSLYETERLVQELARLDIDARNIVVNQILAPDPKGHCKVCAARLKMQQKYLDQIHLLYQ 615
            L  MEIDP  +++E     EGG M          +PG+DEAMGFAE+M+ V    +SV+VFDTAPTGHTLR L  P V+  AL K+  L   FG M + +SG +G+     +M  K+ +MRE +  V  QF+DP  TTF+CVCI EFLSLYETER+VQEL    ID  NI+VNQ+L P    +C+ C+ R KMQQKYL+QI+ LY+
Sbjct:   85 LYAMEIDPTSSIQEMLDQSEGGAMSAMMQDLAFAIPGVDEAMGFAEVMKLVKSMEYSVIVFDTAPTGHTLRFLSFPAVLEKALAKVSQLSGRFGPMLQQMSGMMGVSPNQEDMFAKLESMREVITEVNNQFKDPEKTTFICVCIAEFLSLYETERMVQELTSYHIDTHNIIVNQLLFPKADSNCEQCSVRHKMQQKYLEQIYELYE 290          
BLAST of mRNA_M-pyrifera_M_contig107916.1687.1 vs. uniprot
Match: A0A168MDA9_ABSGL (ATPase GET3 n=2 Tax=Absidia TaxID=4828 RepID=A0A168MDA9_ABSGL)

HSP 1 Score: 200 bits (509), Expect = 2.500e-60
Identity = 104/207 (50.24%), Postives = 136/207 (65.70%), Query Frame = 1
Query:    1 LSCMEIDPAGALEEA--GAGEGGLMXXXXXXXXXXLPGIDEAMGFAELMRSVADASFSVVVFDTAPTGHTLRMLQVPRVMSAALEKLEGLRSSFGGMFEALSGSLGMEGGVGEMAEKMLAMREGVERVIEQFRDPTLTTFVCVCIPEFLSLYETERLVQELARLDIDARNIVVNQILAPDPKGHCKVCAARLKMQQKYLDQIHLLYQ 615
            L  MEIDP  +++E    + +   M          +PG+DEAMGFAE+M+ V   S+SVVVFDTAPTGHTLR L  P V+  AL K+ GL   FG MF+ +SG +GM     +M  K+  MR  +  V  QF+DP++TTF+CVCI EFLSLYETER++QEL    ID  NI+VNQ+L P    +C+ C+ R KMQQKYL+QI+ LY+
Sbjct:   88 LYAMEIDPTSSIQEMIEQSDQSNGMGSMVQDLAYAIPGVDEAMGFAEVMKQVKTMSYSVVVFDTAPTGHTLRFLSFPTVLEKALAKISGLSGRFGPMFQQVSGMMGMNANQEDMFGKLEEMRSVITEVNNQFKDPSITTFICVCISEFLSLYETERMIQELTSYHIDTHNIIVNQLLFPKDGSNCEHCSVRHKMQQKYLEQINDLYE 294          
BLAST of mRNA_M-pyrifera_M_contig107916.1687.1 vs. uniprot
Match: M4C2K8_HYAAE (ATPase ASNA1 homolog n=32 Tax=Peronosporaceae TaxID=4777 RepID=M4C2K8_HYAAE)

HSP 1 Score: 200 bits (508), Expect = 3.440e-60
Identity = 110/209 (52.63%), Postives = 138/209 (66.03%), Query Frame = 1
Query:    1 LSCMEIDPAGALEEA---GAGEGGLMXXXXXXXXXXLPGIDEAMGFAELMRSVADASFSVVVFDTAPTGHTLRMLQVPRVMSAALEKLEGLRSSFGGMFEALSGSLGMEGGVGEMA-EKMLAMREGVERVIEQFRDPTLTTFVCVCIPEFLSLYETERLVQELARLDIDARNIVVNQILAPDPKGHCKVCAARLKMQQKYLDQIHLLYQ 615
            L+ MEIDP   LEE    G  +   M          +PGIDEAM FAELM+ V +  +SV+VFDTAPTGHTLR+L  PR +  A +K+  L++ F GMF  +S  LG      EM   K+   RE +++V  QF+DP  TTFVCVCIPEFLSLYETERLVQEL + +ID  N+VVNQ+L P+    CK C+AR KMQQKY+DQI+ LY+
Sbjct:   85 LAVMEIDPNVDLEEMNADGVQDNSGMASFMKDLTNSIPGIDEAMSFAELMKQVQNMDYSVIVFDTAPTGHTLRLLSFPRALDKAFDKILSLKNQFSGMFSQVSALLGGALPSQEMLLGKLEQTREVIQKVNAQFKDPERTTFVCVCIPEFLSLYETERLVQELTKYEIDVHNVVVNQVLYPEEGSTCKSCSARQKMQQKYIDQIYDLYE 293          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107916.1687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2T9YUX3_9FUNG1.360e-6452.91ATPase GET3 n=2 Tax=Harpellales TaxID=61421 RepID=... [more]
D5GGF4_TUBMM4.380e-6251.44ATPase GET3 n=5 Tax=Tuberaceae TaxID=40289 RepID=D... [more]
A0A2T9XXE5_9FUNG1.050e-6150.49ATPase GET3 n=1 Tax=Smittium megazygosporum TaxID=... [more]
I3T558_LOTJA4.950e-6150.74ArsA_ATPase domain-containing protein n=2 Tax=NPAA... [more]
A0A1R1Y7V8_9FUNG7.610e-6150.69ATPase GET3 n=3 Tax=Smittium culicis TaxID=133412 ... [more]
A0A162UUY1_PHYB81.980e-6050.48ATPase GET3 n=4 Tax=Mucoromycotina TaxID=451507 Re... [more]
A0A0B7NN88_9FUNG2.030e-6051.21ATPase GET3 n=16 Tax=Mucorales TaxID=4827 RepID=A0... [more]
A0A4Q0A1G0_9FUNG2.240e-6050.49ATPase GET3 n=1 Tax=Dimargaris cristalligena TaxID... [more]
A0A168MDA9_ABSGL2.500e-6050.24ATPase GET3 n=2 Tax=Absidia TaxID=4828 RepID=A0A16... [more]
M4C2K8_HYAAE3.440e-6052.63ATPase ASNA1 homolog n=32 Tax=Peronosporaceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107916contigM-pyrifera_M_contig107916:2..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score204.1
Seed ortholog evalue6e-50
Seed eggNOG ortholog39416.CAZ83597
Preferred nameGET3
KEGG koko:K01551
KEGG TC3.A.19.1,3.A.21.1,3.A.4.1
Hectar predicted targeting categoryother localisation
GOsGO:0000749,GO:0000750,GO:0003674,GO:0003824,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005829,GO:0006457,GO:0006605,GO:0006612,GO:0006620,GO:0006810,GO:0006886,GO:0006890,GO:0006950,GO:0006996,GO:0007029,GO:0007154,GO:0007165,GO:0007186,GO:0008104,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0019899,GO:0023052,GO:0031136,GO:0031137,GO:0031139,GO:0032005,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042221,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043529,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0046907,GO:0046999,GO:0048193,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051082,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0061077,GO:0065007,GO:0065009,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098772,GO:1990507,GO:2000241,GO:2000243
EggNOG free text desc.ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail- anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting
EggNOG OGs38BC4@33154,3NX42@4751,3QKBH@4890,COG0003@1,KOG2825@2759
EC3.6.3.16
COG Functional cat.P
BiGG ReactioniMM904.YDL100C,iND750.YDL100C
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000
Exons1
Model size615
Cds size606
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.9730299-UTR-M-pyrifera_M_contig107916:1..101622815588.9730299-UTR-M-pyrifera_M_contig107916:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107916 2..10 +
1692277476.9115298-UTR-M-pyrifera_M_contig107916:1..101692277476.9115298-UTR-M-pyrifera_M_contig107916:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107916 2..10 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.9898608-CDS-M-pyrifera_M_contig107916:10..6161622815588.9898608-CDS-M-pyrifera_M_contig107916:10..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107916 11..616 +
1692277476.9334009-CDS-M-pyrifera_M_contig107916:10..6161692277476.9334009-CDS-M-pyrifera_M_contig107916:10..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107916 11..616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107916.1687.1prot_M-pyrifera_M_contig107916.1687.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107916 11..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107916.1687.1

>prot_M-pyrifera_M_contig107916.1687.1 ID=prot_M-pyrifera_M_contig107916.1687.1|Name=mRNA_M-pyrifera_M_contig107916.1687.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
MEIDPAGALEEAGAGEGGLMGGLLGELGGVLPGIDEAMGFAELMRSVADA
SFSVVVFDTAPTGHTLRMLQVPRVMSAALEKLEGLRSSFGGMFEALSGSL
GMEGGVGEMAEKMLAMREGVERVIEQFRDPTLTTFVCVCIPEFLSLYETE
RLVQELARLDIDARNIVVNQILAPDPKGHCKVCAARLKMQQKYLDQIHLL
YQ
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mRNA from alignment at M-pyrifera_M_contig107916:2..616+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107916.1687.1 ID=mRNA_M-pyrifera_M_contig107916.1687.1|Name=mRNA_M-pyrifera_M_contig107916.1687.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig107916:2..616+ (Macrocystis pyrifera P11B4 male)
TTGTCGTGCATGGAGATCGATCCTGCGGGTGCCTTGGAGGAGGCGGGTGC TGGGGAGGGAGGGTTGATGGGAGGGTTGCTGGGGGAGTTGGGCGGGGTGT TGCCTGGGATCGATGAGGCCATGGGGTTTGCAGAGCTGATGCGTTCGGTG GCGGACGCAAGTTTTTCCGTCGTGGTCTTCGACACTGCCCCAACCGGTCA CACTTTGCGCATGTTGCAGGTGCCGCGAGTGATGTCGGCGGCGCTGGAGA AGCTGGAGGGCCTCCGTAGTTCGTTTGGGGGTATGTTCGAAGCATTGAGT GGATCGCTGGGCATGGAGGGTGGGGTTGGGGAGATGGCGGAGAAAATGCT TGCCATGCGAGAAGGGGTGGAGCGGGTGATTGAACAGTTCCGAGACCCTA CACTCACCACCTTCGTGTGCGTCTGCATTCCAGAGTTCCTGTCTCTGTAC GAAACAGAACGACTTGTGCAAGAACTAGCAAGACTTGACATTGATGCCCG CAATATCGTCGTCAACCAAATTCTAGCCCCAGACCCAAAAGGACACTGCA AGGTGTGTGCCGCCAGGCTCAAAATGCAGCAAAAGTACCTCGACCAGATC CACCTCCTCTACCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107916:2..616+

>mRNA_M-pyrifera_M_contig107916.1687.1 ID=mRNA_M-pyrifera_M_contig107916.1687.1|Name=mRNA_M-pyrifera_M_contig107916.1687.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1212bp|location=Sequence derived from alignment at M-pyrifera_M_contig107916:2..616+ (Macrocystis pyrifera P11B4 male)
ATGGAGATCGATCCTGCGGGTGCCTTGGAGGAGGCGGGTGCTGGGGAGGG
AGGGTTGATGGGAGGGTTGCTGGGGGAGTTGGGCGGGGTGTTGCCTGGGA
TCGATGAGGCCATGGGGTTTGCAGAGCTGATGCGTTCGGTGGCGGACGCA
AGTTTTTCCGTCGTGGTCTTCGACACTGCCCCAACCGGTCACACTTTGCG
CATGTTGCAGGTGCCGCGAGTGATGTCGGCGGCGCTGGAGAAGCTGGAGG
GCCTCCGTAGTTCGTTTGGGGGTATGTTCGAAGCATTGAGTGGATCGCTG
GGCATGGAGGGTGGGGTTGGGGAGATGGCGGAGAAAATGCTTGCCATGCG
AGAAGGGGTGGAGCGGGTGATTGAACAGTTCCGAGACCCTACACTCACCA
CCTTCGTGTGCGTCTGCATTCCAGAGTTCCTGTCTCTGTACGAAACAGAA
CGACTTGTGCAAGAACTAGCAAGACTTGACATTGATGCCCGCAATATCGT
CGTCAACCAAATTCTAGCCCCAGACCCAAAAGGACACTGCAAGGTGTGTG
CCGCCAGGCTCAAAATGCAGCAAAAGTACCTCGACCAGATCCACCTCCTC
TACCAAATGGAGATCGATCCTGCGGGTGCCTTGGAGGAGGCGGGTGCTGG
GGAGGGAGGGTTGATGGGAGGGTTGCTGGGGGAGTTGGGCGGGGTGTTGC
CTGGGATCGATGAGGCCATGGGGTTTGCAGAGCTGATGCGTTCGGTGGCG
GACGCAAGTTTTTCCGTCGTGGTCTTCGACACTGCCCCAACCGGTCACAC
TTTGCGCATGTTGCAGGTGCCGCGAGTGATGTCGGCGGCGCTGGAGAAGC
TGGAGGGCCTCCGTAGTTCGTTTGGGGGTATGTTCGAAGCATTGAGTGGA
TCGCTGGGCATGGAGGGTGGGGTTGGGGAGATGGCGGAGAAAATGCTTGC
CATGCGAGAAGGGGTGGAGCGGGTGATTGAACAGTTCCGAGACCCTACAC
TCACCACCTTCGTGTGCGTCTGCATTCCAGAGTTCCTGTCTCTGTACGAA
ACAGAACGACTTGTGCAAGAACTAGCAAGACTTGACATTGATGCCCGCAA
TATCGTCGTCAACCAAATTCTAGCCCCAGACCCAAAAGGACACTGCAAGG
TGTGTGCCGCCAGGCTCAAAATGCAGCAAAAGTACCTCGACCAGATCCAC
CTCCTCTACCAA
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