mRNA_M-pyrifera_M_contig107912.1685.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107912.1685.1
Unique NamemRNA_M-pyrifera_M_contig107912.1685.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107912.1685.1 vs. uniprot
Match: A0A812WER6_9DINO (ACOT13 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WER6_9DINO)

HSP 1 Score: 154 bits (390), Expect = 4.070e-45
Identity = 77/142 (54.23%), Postives = 101/142 (71.13%), Query Frame = 1
Query:    1 SFIDVAKREGAGALLGWFQTT-KRFDRTLRGMEITSLGSGEVECVLEVGERVMNAFGTLHGGAIATIVDVVGTLALLSSSPTTPGVSIDLNVSFARAAPGGSKVRIEGKLLKLGKKLAFTEVSLYDKDSGKLIATGRHTKSL 423
            SFIDVAK+ GA ALLG+   T  RFDR +  +++  +G G V+C + V E V NA+GTLHGGA AT+VD+VGTLALL+  PT  GV+++LN S+A AA  G  V + G +LK GKKL FT+V +     GKL+A+GRHTK+L
Sbjct:   50 SFIDVAKKHGANALLGYLANTGSRFDRNMADLKVVQVGEGMVKCEMPVTEMVQNAYGTLHGGAQATLVDIVGTLALLTVDPTKAGVTVELNCSYASAAKAGDTVTVVGVVLKTGKKLGFTQVDITRNSDGKLVASGRHTKAL 191          
BLAST of mRNA_M-pyrifera_M_contig107912.1685.1 vs. uniprot
Match: A0A5A8CH71_CAFRO (4HBT domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CH71_CAFRO)

HSP 1 Score: 149 bits (376), Expect = 1.210e-42
Identity = 78/144 (54.17%), Postives = 99/144 (68.75%), Query Frame = 1
Query:    1 SFIDVAKREGAGALLGWFQTTK-RFDRTLRGMEITSLGS--GEVECVLEVGERVMNAFGTLHGGAIATIVDVVGTLALLSSSPTTPGVSIDLNVSFARAAPGGSKVRIEGKLLKLGKKLAFTEVSLYDKDSGKLIATGRHTKSL 423
            SFID  KR GA A+LG F +T  RFDR L G+E+T + S  GEVEC+  V +   NA+GTLHGG + T+VDVVGT+ALLS  P   GVS++L+ SF  AA  G  VR  G++ K+G+KL FT+V LY    G L A+GRHTK+L
Sbjct:   76 SFIDRVKRLGANAMLGSFVSTGVRFDRVLEGLEVTRIDSEAGEVECLFPVTDASSNAYGTLHGGCVTTLVDVVGTMALLSQDPLRAGVSVELSTSFTAAAKAGDSVRCVGRVTKMGRKLGFTQVDLYRVSDGALAASGRHTKAL 219          
BLAST of mRNA_M-pyrifera_M_contig107912.1685.1 vs. uniprot
Match: A0A812HBD2_9DINO (ACOT13 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812HBD2_9DINO)

HSP 1 Score: 143 bits (360), Expect = 7.220e-41
Identity = 74/140 (52.86%), Postives = 96/140 (68.57%), Query Frame = 1
Query:    4 FIDVAKREGAGALLGWFQTT-KRFDRTLRGMEITSLGSGEVECVLEVGERVMNAFGTLHGGAIATIVDVVGTLALLSSSPTTPGVSIDLNVSFARAAPGGSKVRIEGKLLKLGKKLAFTEVSLYDKDSGKLIATGRHTKS 420
            +I  A  EG  +LLG FQ+T  RFD  LRGME   +  G VEC + VG+ V NA+GT+HGG  AT+VDV+GT+ALLS  PT PGVS++++ +F   A GG  + + G + K G+ L FTEV L D  SGKL+ATGRHTK+
Sbjct:   25 YIQRAAAEGRDSLLGQFQSTGDRFDSVLRGMECIKVEEGYVECQITVGDGVKNAYGTMHGGCTATLVDVLGTMALLSKDPTRPGVSVEMSQTFMAPAKGGEVITVTGTVTKYGRALGFTEVKLTDA-SGKLLATGRHTKA 163          
BLAST of mRNA_M-pyrifera_M_contig107912.1685.1 vs. uniprot
Match: F2UN84_SALR5 (4HBT domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UN84_SALR5)

HSP 1 Score: 131 bits (330), Expect = 1.210e-36
Identity = 64/141 (45.39%), Postives = 94/141 (66.67%), Query Frame = 1
Query:    1 SFIDVAKREGAGALLGWFQTTKRFDRTLRGMEITSLGSGEVECVLEVGERVMNAFGTLHGGAIATIVDVVGTLALLSSSPTTPGVSIDLNVSFARAAPGGSKVRIEGKLLKLGKKLAFTEVSLYDKDSGKLIATGRHTKSL 423
            SFI    + GA ALLG F ++  FD   + + + ++ +G V   L V + + N++GTLHGGA AT+VD+VGT+ALL+  P   GVS+D+N S+ RAA  G ++ I G++LK GKKL FT+V +  K   +++ TGRHTK+L
Sbjct:    3 SFIQRVAKLGANALLGVFTSSGGFDGAFKELRVVAIKAGSVTATLPVTKPLCNSYGTLHGGAAATLVDIVGTMALLTKDPRRAGVSVDINTSYLRAAKEGEELLITGQVLKTGKKLGFTQVDIARKSDNEVLVTGRHTKAL 143          
BLAST of mRNA_M-pyrifera_M_contig107912.1685.1 vs. uniprot
Match: A0A7S3B200_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B200_9EUKA)

HSP 1 Score: 129 bits (325), Expect = 2.550e-35
Identity = 77/143 (53.85%), Postives = 95/143 (66.43%), Query Frame = 1
Query:    1 SFIDVAKREG-AGALLGWFQTTKRFDRTLR--GMEITSLGSGEVECVLEVGERVMNAFGTLHGGAIATIVDVVGTLALLSSSPTTPGVSIDLNVSFARAAPGGSKVRIEGKLLKLGKKLAFTEVSLY-DKDSGKLIATGRHTK 417
            SFI  A   G A AL+G F++   FD  L   GM ITS+G G VE  L V + + N +GTLHG AIAT+VDVVGTLALLS  PT  GVSI++N SF  AA  G ++ + G++LK G+ LAFTEV L  D  +G L+A GRHTK
Sbjct:   40 SFITRAAAHGDARALIGPFKSAGLFDACLEDGGMMITSIGDGRVEASLVVSDALANNYGTLHGAAIATVVDVVGTLALLSVDPTRAGVSIEMNQSFCSAAKVGQRLVLSGEVLKYGRSLAFTEVHLRKDGVAGPLVAVGRHTK 182          
BLAST of mRNA_M-pyrifera_M_contig107912.1685.1 vs. uniprot
Match: A0A1Q9D5U8_SYMMI (Acyl-coenzyme A thioesterase 13 n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9D5U8_SYMMI)

HSP 1 Score: 135 bits (341), Expect = 3.000e-34
Identity = 71/135 (52.59%), Postives = 92/135 (68.15%), Query Frame = 1
Query:    4 FIDVAKREGAGALLGWFQTT-KRFDRTLRGMEITSLGSGEVECVLEVGERVMNAFGTLHGGAIATIVDVVGTLALLSSSPTTPGVSIDLNVSFARAAPGGSKVRIEGKLLKLGKKLAFTEVSLYDKDSGKLIATG 405
            +I  A  EG+ +LLG FQ+T  RFD  LRGME   +  G VEC + V E V NA+GT+HGG  AT+VDV+GT+ALLS  PT PGVS++++ +F   A GG  + + G +LK G+ L FTEV L D  SGKL+ATG
Sbjct:  948 YIQRAAAEGSQSLLGPFQSTGDRFDSVLRGMECVKVEEGYVECQITVAEGVKNAYGTMHGGCTATLVDVLGTMALLSKDPTRPGVSVEMSQTFMAPAKGGEVITVTGTVLKYGRALGFTEVKLLD-SSGKLLATG 1081          
BLAST of mRNA_M-pyrifera_M_contig107912.1685.1 vs. uniprot
Match: A0A7S2DMB6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DMB6_9EUKA)

HSP 1 Score: 125 bits (315), Expect = 3.840e-34
Identity = 72/142 (50.70%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 SFI-DVAKREGAGALLGWFQTTKRFDRTLR--GMEITSLGSGEVECVLEVGERVMNAFGTLHGGAIATIVDVVGTLALLSSSPTTPGVSIDLNVSFARAAPGGSKVRIEGKLLKLGKKLAFTEVSLYDKDSGKLIATGRHTK 417
            SF+   A  + A  LLG F +  RFD  L   G E T++G+    C L V E + N + TLHGGAIA +VDVVGTLALL   PT PGVS+++N SF  AA  G ++ I GK+L+ GKKL FTEV++   D+ +LIA GRHTK
Sbjct:   18 SFLAKAAAAKDASVLLGRFPSGGRFDSVLADAGFETTAIGNDGAVCALTVTEPLTNNYKTLHGGAIALLVDVVGTLALLGRDPTRPGVSVEMNQSFCAAAKEGEQLLITGKVLRYGKKLGFTEVAIRT-DADRLIAVGRHTK 158          
BLAST of mRNA_M-pyrifera_M_contig107912.1685.1 vs. uniprot
Match: R1B4M4_EMIHU (Thioesterase superfamily member 2 n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B4M4_EMIHU)

HSP 1 Score: 120 bits (300), Expect = 2.440e-32
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 1
Query:   91 MEITSLGSGEVECVLEVGERVMNAFGTLHGGAIATIVDVVGTLALLSSSPTTPGVSIDLNVSFARAAPGGSKVRIEGKLLKLGKKLAFTEVSLYDKDSGKLIATGRHTK 417
            ME+T++G   V C L V   + N + TLHGGAIATIVDVVGTLA+L   P  PG+S+++N SF  AA  G ++ I G +L+LGK LAFTEV++    + KL+ATGRHTK
Sbjct:    1 MEVTAIGPEGVACSLVVSRALTNNYSTLHGGAIATIVDVVGTLAILGRDPLRPGISVEMNQSFCSAAAEGDRLEIHGSVLRLGKTLAFTEVTIRTGAAAKLVATGRHTK 109          
BLAST of mRNA_M-pyrifera_M_contig107912.1685.1 vs. uniprot
Match: A0A7S3WHX7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WHX7_EMIHU)

HSP 1 Score: 122 bits (306), Expect = 2.820e-32
Identity = 60/110 (54.55%), Postives = 78/110 (70.91%), Query Frame = 1
Query:   88 GMEITSLGSGEVECVLEVGERVMNAFGTLHGGAIATIVDVVGTLALLSSSPTTPGVSIDLNVSFARAAPGGSKVRIEGKLLKLGKKLAFTEVSLYDKDSGKLIATGRHTK 417
            GME+T++G   V C L V   + N + TLHGGAIATIVDVVGTLA+L   P  PG+S+++N SF  AA  G ++ I G +L+LGK LAFTEV++    + KL+ATGRHTK
Sbjct:   82 GMEVTAIGPEGVACSLVVSRALTNNYSTLHGGAIATIVDVVGTLAILGRDPLRPGISVEMNQSFCSAAAEGDRLEIHGSVLRLGKTLAFTEVTIRTGAAAKLVATGRHTK 191          
BLAST of mRNA_M-pyrifera_M_contig107912.1685.1 vs. uniprot
Match: A0A7S0LRW5_9EUKA (Hypothetical protein n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRW5_9EUKA)

HSP 1 Score: 121 bits (303), Expect = 8.200e-32
Identity = 72/167 (43.11%), Postives = 99/167 (59.28%), Query Frame = 1
Query:    1 SFIDVAKREG-AGALLGWFQTTKRFDRTLR--GMEITSLGSGEVECVLEVGERVMNAFGTLHGGAIATIVDVVGTLALLSSSPTTPGVSIDLNVSFARAAPGGSKVRIEGKLLKLGKKLAFTEVS-LYDKD-----------------------SGKLIATGRHTKS 420
            SFI  A+  G A ALLG F + ++FD  +   GME   +G G V C ++V + + N FG+LHGGAI+T+VDVVGTLALLS  P  PGVS+++N SF  +A  G ++RI+G +L+ G+ L FTEV  L D+                        S +L+A GRHTK+
Sbjct:   27 SFIARARDAGDARALLGSFLSARKFDACIEDAGMECVHVGDGVVTCTMQVSDALANNFGSLHGGAISTLVDVVGTLALLSKDPLRPGVSVEMNQSFCSSARVGERLRIQGSVLRYGRTLGFTEVRILVDQPAISGTVETQRSVDGALPAHSGAASARLVAVGRHTKA 193          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107912.1685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812WER6_9DINO4.070e-4554.23ACOT13 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A5A8CH71_CAFRO1.210e-4254.174HBT domain-containing protein n=2 Tax=Cafeteria r... [more]
A0A812HBD2_9DINO7.220e-4152.86ACOT13 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
F2UN84_SALR51.210e-3645.394HBT domain-containing protein n=1 Tax=Salpingoeca... [more]
A0A7S3B200_9EUKA2.550e-3553.85Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A1Q9D5U8_SYMMI3.000e-3452.59Acyl-coenzyme A thioesterase 13 n=2 Tax=Symbiodini... [more]
A0A7S2DMB6_9EUKA3.840e-3450.70Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
R1B4M4_EMIHU2.440e-3254.13Thioesterase superfamily member 2 n=1 Tax=Emiliani... [more]
A0A7S3WHX7_EMIHU2.820e-3254.55Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S0LRW5_9EUKA8.200e-3243.11Hypothetical protein n=2 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107912contigM-pyrifera_M_contig107912:63..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score130.6
Seed ortholog evalue5.9e-28
Seed eggNOG ortholog946362.XP_004989532.1
KEGG koko:K17362
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009987,GO:0016043,GO:0016289,GO:0016787,GO:0016788,GO:0016790,GO:0022607,GO:0042802,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0047617,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0065003,GO:0071840
EggNOG free text desc.acyl-CoA hydrolase activity
EggNOG OGs39ZWT@33154,COG2050@1,KOG3328@2759
COG Functional cat.Q
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01004
Exons1
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.857384-CDS-M-pyrifera_M_contig107912:62..4881622815588.857384-CDS-M-pyrifera_M_contig107912:62..488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107912 63..488 +
1692277476.8850174-CDS-M-pyrifera_M_contig107912:62..4881692277476.8850174-CDS-M-pyrifera_M_contig107912:62..488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107912 63..488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107912.1685.1prot_M-pyrifera_M_contig107912.1685.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107912 63..488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107912.1685.1

>prot_M-pyrifera_M_contig107912.1685.1 ID=prot_M-pyrifera_M_contig107912.1685.1|Name=mRNA_M-pyrifera_M_contig107912.1685.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
SFIDVAKREGAGALLGWFQTTKRFDRTLRGMEITSLGSGEVECVLEVGER
VMNAFGTLHGGAIATIVDVVGTLALLSSSPTTPGVSIDLNVSFARAAPGG
SKVRIEGKLLKLGKKLAFTEVSLYDKDSGKLIATGRHTKSL*
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mRNA from alignment at M-pyrifera_M_contig107912:63..488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107912.1685.1 ID=mRNA_M-pyrifera_M_contig107912.1685.1|Name=mRNA_M-pyrifera_M_contig107912.1685.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig107912:63..488+ (Macrocystis pyrifera P11B4 male)
AGTTTCATTGATGTAGCGAAGCGAGAGGGGGCAGGGGCTCTGCTAGGATG GTTCCAAACTACGAAACGGTTTGATCGGACGTTGCGAGGCATGGAGATCA CTTCGTTGGGCTCTGGGGAAGTGGAGTGTGTGTTGGAAGTTGGGGAGCGG GTGATGAATGCGTTTGGAACGTTGCATGGAGGTGCCATTGCTACTATCGT CGACGTCGTTGGTACTCTCGCTCTCCTCTCCTCCTCACCCACCACTCCGG GAGTCAGCATCGACCTCAACGTTTCTTTTGCCAGAGCTGCCCCTGGAGGG AGCAAAGTGAGAATCGAGGGCAAACTCCTCAAGCTAGGCAAGAAGCTCGC CTTCACAGAGGTTTCCCTTTACGACAAAGACTCTGGCAAGCTCATTGCCA CCGGCAGACACACCAAGTCCTTGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107912:63..488+

>mRNA_M-pyrifera_M_contig107912.1685.1 ID=mRNA_M-pyrifera_M_contig107912.1685.1|Name=mRNA_M-pyrifera_M_contig107912.1685.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig107912:63..488+ (Macrocystis pyrifera P11B4 male)
AGTTTCATTGATGTAGCGAAGCGAGAGGGGGCAGGGGCTCTGCTAGGATG
GTTCCAAACTACGAAACGGTTTGATCGGACGTTGCGAGGCATGGAGATCA
CTTCGTTGGGCTCTGGGGAAGTGGAGTGTGTGTTGGAAGTTGGGGAGCGG
GTGATGAATGCGTTTGGAACGTTGCATGGAGGTGCCATTGCTACTATCGT
CGACGTCGTTGGTACTCTCGCTCTCCTCTCCTCCTCACCCACCACTCCGG
GAGTCAGCATCGACCTCAACGTTTCTTTTGCCAGAGCTGCCCCTGGAGGG
AGCAAAGTGAGAATCGAGGGCAAACTCCTCAAGCTAGGCAAGAAGCTCGC
CTTCACAGAGGTTTCCCTTTACGACAAAGACTCTGGCAAGCTCATTGCCA
CCGGCAGACACACCAAGTCCTTGTAGAGTTTCATTGATGTAGCGAAGCGA
GAGGGGGCAGGGGCTCTGCTAGGATGGTTCCAAACTACGAAACGGTTTGA
TCGGACGTTGCGAGGCATGGAGATCACTTCGTTGGGCTCTGGGGAAGTGG
AGTGTGTGTTGGAAGTTGGGGAGCGGGTGATGAATGCGTTTGGAACGTTG
CATGGAGGTGCCATTGCTACTATCGTCGACGTCGTTGGTACTCTCGCTCT
CCTCTCCTCCTCACCCACCACTCCGGGAGTCAGCATCGACCTCAACGTTT
CTTTTGCCAGAGCTGCCCCTGGAGGGAGCAAAGTGAGAATCGAGGGCAAA
CTCCTCAAGCTAGGCAAGAAGCTCGCCTTCACAGAGGTTTCCCTTTACGA
CAAAGACTCTGGCAAGCTCATTGCCACCGGCAGACACACCAAGTCCTTGT
AG
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