mRNA_M-pyrifera_M_contig107908.1683.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107908.1683.1
Unique NamemRNA_M-pyrifera_M_contig107908.1683.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107908.1683.1 vs. uniprot
Match: A0A0U9HIL5_KLENI (RNA recognition motif domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HIL5_KLENI)

HSP 1 Score: 59.7 bits (143), Expect = 2.800e-8
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   70 AEGVSGS----HRIFVRGVPASMPASAVRAHFEQYGVVHDVYFPKVHAMNGRVPTQKRKGFCFVTMGSETQVRDAIASS 294
            AEG   S    HRIFV GVP  +  + ++AHFE+YG V DVYFP V        + +R+GFCFV   +     +A A S
Sbjct:  496 AEGSGSSDGKGHRIFVGGVPDQITEAQMKAHFERYGRVEDVYFPLVKG------SDRRRGFCFVRFETRRAAENAAARS 568
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BLAST of mRNA_M-pyrifera_M_contig107908.1683.1 vs. uniprot
Match: A0A176W8E9_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W8E9_MARPO)

HSP 1 Score: 55.1 bits (131), Expect = 1.060e-6
Identity = 30/73 (41.10%), Postives = 39/73 (53.42%), Query Frame = 1 
Query:   76 GVSGSHRIFVRGVPASMPASAVRAHFEQYGVVHDVYFPKVHAMNGRVPTQKRKGFCFVTMGSETQVRDAIASS 294
            G+  S R+FV G+P  +    +R HF++YG V DVYFP+         T KR+GFCFV   S      A A S
Sbjct:  192 GLPRSARVFVGGIPDVLVERHIRVHFQKYGNVEDVYFPR------EKHTGKRRGFCFVRFDSPRTAEVAAARS 258
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BLAST of mRNA_M-pyrifera_M_contig107908.1683.1 vs. uniprot
Match: A9RVN6_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RVN6_PHYPA)

HSP 1 Score: 54.3 bits (129), Expect = 1.350e-6
Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:   94 RIFVRGVPASMPASAVRAHFEQYGVVHDVYFPKVHAMNGRVPTQKRKGFCFVTMGSETQVRDAIASS 294
            RIFV GVP  +    ++ HFE+YG V DVYFPK         T+KR+GFC+V   +      A A S
Sbjct:  103 RIFVGGVPDVLSEEDLKVHFEKYGKVEDVYFPK------EKETRKRRGFCYVRFDNPKAADAAAARS 163
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BLAST of mRNA_M-pyrifera_M_contig107908.1683.1 vs. uniprot
Match: A0A2K1JVI5_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JVI5_PHYPA)

HSP 1 Score: 54.3 bits (129), Expect = 2.080e-6
Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:   94 RIFVRGVPASMPASAVRAHFEQYGVVHDVYFPKVHAMNGRVPTQKRKGFCFVTMGSETQVRDAIASS 294
            RIFV GVP  +    ++ HFE+YG V DVYFPK         T+KR+GFC+V   +      A A S
Sbjct:  257 RIFVGGVPDVLSEEDLKVHFEKYGKVEDVYFPK------EKETRKRRGFCYVRFDNPKAADAAAARS 317
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BLAST of mRNA_M-pyrifera_M_contig107908.1683.1 vs. uniprot
Match: A0A388LJA3_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LJA3_CHABU)

HSP 1 Score: 52.8 bits (125), Expect = 6.980e-6
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   94 RIFVRGVPASMPASAVRAHFEQYGVVHDVYFPKVHAMNGRVPTQKRKGFCFVTMGSETQVRDAIASS 294
            RIFV GVP ++  S ++AHFE+YG V DVYFP    ++GR     R+GFC+V   +      A A S
Sbjct:  194 RIFVGGVPDAITESDMKAHFERYGQVKDVYFP-TDRVSGR-----RRGFCYVRFTTMHSAEAAAARS 254
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107908.1683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0U9HIL5_KLENI2.800e-843.04RNA recognition motif domain containing protein n=... [more]
A0A176W8E9_MARPO1.060e-641.10Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A9RVN6_PHYPA1.350e-643.28Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A2K1JVI5_PHYPA2.080e-643.28Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A388LJA3_CHABU6.980e-644.78Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107908contigM-pyrifera_M_contig107908:6..299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA-binding protein
Ec32 orthologEc-16_000660.1
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.7812314-CDS-M-pyrifera_M_contig107908:5..2991622815588.7812314-CDS-M-pyrifera_M_contig107908:5..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107908 6..299 -
1692277476.860277-CDS-M-pyrifera_M_contig107908:5..2991692277476.860277-CDS-M-pyrifera_M_contig107908:5..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107908 6..299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107908.1683.1prot_M-pyrifera_M_contig107908.1683.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107908 6..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107908.1683.1

>prot_M-pyrifera_M_contig107908.1683.1 ID=prot_M-pyrifera_M_contig107908.1683.1|Name=mRNA_M-pyrifera_M_contig107908.1683.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
AGGGGGGGGGGGGGVVGERYDRVAEGVSGSHRIFVRGVPASMPASAVRAH
FEQYGVVHDVYFPKVHAMNGRVPTQKRKGFCFVTMGSETQVRDAIASS
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mRNA from alignment at M-pyrifera_M_contig107908:6..299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107908.1683.1 ID=mRNA_M-pyrifera_M_contig107908.1683.1|Name=mRNA_M-pyrifera_M_contig107908.1683.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig107908:6..299- (Macrocystis pyrifera P11B4 male)
GCAGGAGGTGGGGGTGGTGGGGGTGGTGGGGGAGGAGGTGGGGTGGTGGG
AGAGAGGTATGATAGGGTGGCAGAAGGGGTTTCTGGATCACATCGCATCT
TTGTGAGAGGGGTACCAGCGTCAATGCCTGCTTCCGCTGTTCGTGCACAC
TTTGAGCAGTATGGAGTGGTGCATGACGTGTACTTTCCAAAGGTGCATGC
CATGAATGGCAGAGTGCCTACACAGAAACGGAAAGGGTTTTGTTTCGTGA
CAATGGGATCGGAAACACAAGTGAGAGATGCCATTGCATCATCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107908:6..299-

>mRNA_M-pyrifera_M_contig107908.1683.1 ID=mRNA_M-pyrifera_M_contig107908.1683.1|Name=mRNA_M-pyrifera_M_contig107908.1683.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig107908:6..299- (Macrocystis pyrifera P11B4 male)
GCAGGAGGTGGGGGTGGTGGGGGTGGTGGGGGAGGAGGTGGGGTGGTGGG
AGAGAGGTATGATAGGGTGGCAGAAGGGGTTTCTGGATCACATCGCATCT
TTGTGAGAGGGGTACCAGCGTCAATGCCTGCTTCCGCTGTTCGTGCACAC
TTTGAGCAGTATGGAGTGGTGCATGACGTGTACTTTCCAAAGGTGCATGC
CATGAATGGCAGAGTGCCTACACAGAAACGGAAAGGGTTTTGTTTCGTGA
CAATGGGATCGGAAACACAAGTGAGAGATGCCATTGCATCATCGGCAGGA
GGTGGGGGTGGTGGGGGTGGTGGGGGAGGAGGTGGGGTGGTGGGAGAGAG
GTATGATAGGGTGGCAGAAGGGGTTTCTGGATCACATCGCATCTTTGTGA
GAGGGGTACCAGCGTCAATGCCTGCTTCCGCTGTTCGTGCACACTTTGAG
CAGTATGGAGTGGTGCATGACGTGTACTTTCCAAAGGTGCATGCCATGAA
TGGCAGAGTGCCTACACAGAAACGGAAAGGGTTTTGTTTCGTGACAATGG
GATCGGAAACACAAGTGAGAGATGCCATTGCATCATCG
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