mRNA_M-pyrifera_M_contig107904.1682.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107904.1682.1
Unique NamemRNA_M-pyrifera_M_contig107904.1682.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107904.1682.1 vs. uniprot
Match: A0A2A9MBY8_9APIC (Putative kelch repeat protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MBY8_9APIC)

HSP 1 Score: 68.9 bits (167), Expect = 1.250e-11
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 PGARSGHAMVMLGRFLALIGGRHKRGRHNDVHLLDTELMQWTPVHPSGT--PPMQRKTHAVVRLGGGDSKTILMFGGHDGSEWLGDFHVLN 267
            PG R+ H+  ++G  + + GG + +   ND+++LD + ++WT V P     PP  R  H    +G      I + GGHDGS+WL D HVL+
Sbjct:  545 PGPRAAHSCDVIGTKMFIFGGWNGKFALNDLYVLDLQALRWTRVEPDAASPPPDARNNHTTTTVG----DRIFVHGGHDGSQWLADLHVLD 631          
BLAST of mRNA_M-pyrifera_M_contig107904.1682.1 vs. uniprot
Match: S8FBJ8_TOXGM (Kelch repeat protein, putative n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S8FBJ8_TOXGM)

HSP 1 Score: 67.4 bits (163), Expect = 4.220e-11
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    1 PGARSGHAMVMLGRFLALIGGRHKRGRHNDVHLLDTELMQWTPVHPSG-TPPMQRKTHAVVRLGGGDSKTILMFGGHDGSEWLGDFHVLN 267
            PG R+ H+  ++G  + + GG + +   ND+ +LD + ++WT V   G +PP  R  H    +G      I + GGHDG++WL D HVL+
Sbjct:  105 PGPRAAHSCDVIGTKMFIFGGWNGKFALNDLFILDVQSLRWTRVEQDGCSPPEARNNHTTAAVG----DRIFVHGGHDGTQWLADLHVLD 190          
BLAST of mRNA_M-pyrifera_M_contig107904.1682.1 vs. uniprot
Match: A0A2C6KLV4_9APIC (Kelch repeat protein n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KLV4_9APIC)

HSP 1 Score: 63.9 bits (154), Expect = 7.090e-10
Identity = 31/93 (33.33%), Postives = 50/93 (53.76%), Query Frame = 1
Query:    1 PGARSGHAMVMLGRFLALIGGRHKRGRHNDVHLLDTELMQWTPVHPS----GTPPMQRKTHAVVRLGGGDSKTILMFGGHDGSEWLGDFHVLN 267
            PG R+ H+  ++G  L L GG + +    D+++ DT+ ++W  +       G PP  R  HA   +G      I + GGHDG++WL D H+L+
Sbjct:  334 PGPRAAHSCDVIGTKLFLFGGWNGKCALGDLYVFDTQKLRWYHIKQDPETCGRPPKARNNHATATVG----DKIFIHGGHDGTQWLSDLHILD 422          
BLAST of mRNA_M-pyrifera_M_contig107904.1682.1 vs. uniprot
Match: A0A7S4VGI6_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VGI6_9DINO)

HSP 1 Score: 61.2 bits (147), Expect = 6.240e-9
Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 1
Query:    1 PGARSGHAMVMLGRFLALIGGRHKRGR-HNDVHLLDTELMQWTPVHPSGTPPMQRKTHAVVRLGGGDSKTILMFGGHDGSEWLGDFHVLNL 270
            P  R GHA V +GR + ++GG  +  R H+DVH+ DT+ ++WT     G  P  R  H    +    S  + +FGG +  E  GD H L+L
Sbjct:   43 PSGRQGHASVEVGRRIYVVGGCSQDIRCHSDVHVFDTDALEWTQEAMKGEAPEPRGGHTASLV----STDVFVFGGANSEETFGDVHCLDL 129          
BLAST of mRNA_M-pyrifera_M_contig107904.1682.1 vs. uniprot
Match: A0A8K1CPK7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPK7_PYTOL)

HSP 1 Score: 53.9 bits (128), Expect = 2.340e-6
Identity = 31/93 (33.33%), Postives = 49/93 (52.69%), Query Frame = 1
Query:    1 PGARSGHAMVMLGRFLALIGGRHKRG--RHNDVHLLDTELMQWTPVHPSGTPPMQRKTHAVVRLGGGDSKTILMFGGHDGSEWLGDFHVLNLE 273
            P  R+GH+  +  R + +IGG    G    +D+H+LD + M+W      GTPP     H    +     ++IL+F G DG E+L D H L+++
Sbjct:   68 PAGRNGHSATLADRKVFVIGGWLGSGPLAADDMHVLDLDAMEWKQPPVLGTPPGPCNMHTADYIP--HLRSILLFRGGDGREYLNDLHRLDVD 158          
BLAST of mRNA_M-pyrifera_M_contig107904.1682.1 vs. uniprot
Match: L8GJR6_ACACA (AcylCoA binding protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GJR6_ACACA)

HSP 1 Score: 53.5 bits (127), Expect = 2.480e-6
Identity = 31/88 (35.23%), Postives = 43/88 (48.86%), Query Frame = 1
Query:    1 PGARSGHAMVMLGRFLALIGGRHKRGRHNDVHLLDTELMQWTPVHPSGTPPMQRKTHAVVRLGGGDSKTILMFGGHDGSEWLGDFHVL 264
            P  R  H+  ++GR L + GG       +D+HLLDT+ MQW  V   G  P  R     V L       +L++GG D S+   D H+L
Sbjct:  118 PKGRFLHSTCVVGRGLLVWGGHDDEDVFDDLHLLDTDTMQWRRVECEGESPGPRYAAESVTLA---DDLVLVYGGKDDSKAFNDLHLL 202          
BLAST of mRNA_M-pyrifera_M_contig107904.1682.1 vs. uniprot
Match: UPI001CF56505 (actin-fragmin kinase-like isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF56505)

HSP 1 Score: 53.1 bits (126), Expect = 4.290e-6
Identity = 27/85 (31.76%), Postives = 44/85 (51.76%), Query Frame = 1
Query:   16 GHAMVMLGRFLALIGGRHKRGRHNDVHLLDTELMQWTPVHPSGTPPMQRKTHAVVRLGGGDSKTILMFGGHDGSE-WLGDFHVLN 267
            GH+  ++G  L + GG +     ND+++L+T  + WTP+  SG PP  R  HA   +G    +   + GG+ G + W  D H  +
Sbjct:  139 GHSTAVVGDTLYIFGGIYHGEAKNDLYMLNTGNLTWTPLRASGKPPSPRCDHASAVVG----ERFYILGGNGGQKLWYNDLHFFD 219          
BLAST of mRNA_M-pyrifera_M_contig107904.1682.1 vs. uniprot
Match: UPI0018D7C2DC (LOW QUALITY PROTEIN: rho GTPase-activating protein gacHH-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7C2DC)

HSP 1 Score: 52.0 bits (123), Expect = 1.070e-5
Identity = 33/95 (34.74%), Postives = 46/95 (48.42%), Query Frame = 1
Query:    1 PGARSGHAMVMLGRFLALIGGRHKRGR-HNDVHLLDTELMQWTPVHPSGTPPMQRKTHAVVRLGGGDSKTILMFGGHD----GSEWLGDFHVLNL 270
            P  R  H +V +G  + L GG     +  ND+H+ DTE +QW+     G PP  R  H++        K I +FGG +    G   LGD H L+L
Sbjct:  181 PAPRCDHRLVPVGHKIYLFGGCGGXNKCFNDLHVFDTESLQWSSPPVRGDPPPPRGCHSLTLHA---DKDIYVFGGSNDGLKGKTTLGDLHKLSL 272          
BLAST of mRNA_M-pyrifera_M_contig107904.1682.1 vs. uniprot
Match: UPI001C4FEB2B (rab9 effector protein with kelch motifs-like isoform X1 n=2 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4FEB2B)

HSP 1 Score: 50.8 bits (120), Expect = 2.810e-5
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 1
Query:   82 HNDVHLLDTELMQWTPVHPSGTPPMQRKTHAVVRLGGGDSKTILMFGGHDGSE-WLGDFHVLNLE 273
            +ND+H+LDTE ++W  V  SG PP  R +H         +  I++ GG D S+ +L D H+L+ +
Sbjct:  168 YNDLHILDTESLEWQKVVTSGNPPSARDSHTCSSW----TNKIIVIGGEDSSDCYLSDVHILDTD 228          
BLAST of mRNA_M-pyrifera_M_contig107904.1682.1 vs. uniprot
Match: A0A6G0XP51_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP51_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.120e-5
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 1
Query:   10 RSGHAMVMLGRFLALIGGRHKR-GR-HNDVHLLDTELMQWTPVHPSGTPPMQRKTHAVVRLGGGDSKTILMFGG 225
            RSGH  + +G  + + GG + R G+ +ND+H+L+T+ M+WT     G  P  R +H  V L  G    +L+FGG
Sbjct:  103 RSGHTSIAIGACIYVFGGANLREGKVYNDLHILNTDTMEWTSPCADGDIPPPRSSHIAVALPQG----MLIFGG 172          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107904.1682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2A9MBY8_9APIC1.250e-1136.26Putative kelch repeat protein n=1 Tax=Besnoitia be... [more]
S8FBJ8_TOXGM4.220e-1135.56Kelch repeat protein, putative n=15 Tax=Toxoplasma... [more]
A0A2C6KLV4_9APIC7.090e-1033.33Kelch repeat protein n=1 Tax=Cystoisospora suis Ta... [more]
A0A7S4VGI6_9DINO6.240e-936.26Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A8K1CPK7_PYTOL2.340e-633.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
L8GJR6_ACACA2.480e-635.23AcylCoA binding protein, putative n=1 Tax=Acantham... [more]
UPI001CF565054.290e-631.76actin-fragmin kinase-like isoform X1 n=2 Tax=Acrop... [more]
UPI0018D7C2DC1.070e-534.74LOW QUALITY PROTEIN: rho GTPase-activating protein... [more]
UPI001C4FEB2B2.810e-536.92rab9 effector protein with kelch motifs-like isofo... [more]
A0A6G0XP51_9STRA4.120e-537.84Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107904contigM-pyrifera_M_contig107904:127..399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size249
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.7369432-UTR-M-pyrifera_M_contig107904:126..1501622815588.7369432-UTR-M-pyrifera_M_contig107904:126..150Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107904 127..150 +
1692277476.8351538-UTR-M-pyrifera_M_contig107904:126..1501692277476.8351538-UTR-M-pyrifera_M_contig107904:126..150Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig107904 127..150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.7468703-CDS-M-pyrifera_M_contig107904:150..3991622815588.7468703-CDS-M-pyrifera_M_contig107904:150..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107904 151..399 +
1692277476.8494914-CDS-M-pyrifera_M_contig107904:150..3991692277476.8494914-CDS-M-pyrifera_M_contig107904:150..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107904 151..399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107904.1682.1prot_M-pyrifera_M_contig107904.1682.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107904 151..399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107904.1682.1

>prot_M-pyrifera_M_contig107904.1682.1 ID=prot_M-pyrifera_M_contig107904.1682.1|Name=mRNA_M-pyrifera_M_contig107904.1682.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
MVMLGRFLALIGGRHKRGRHNDVHLLDTELMQWTPVHPSGTPPMQRKTHA
VVRLGGGDSKTILMFGGHDGSEWLGDFHVLNLE
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mRNA from alignment at M-pyrifera_M_contig107904:127..399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107904.1682.1 ID=mRNA_M-pyrifera_M_contig107904.1682.1|Name=mRNA_M-pyrifera_M_contig107904.1682.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig107904:127..399+ (Macrocystis pyrifera P11B4 male)
CCAGGCGCACGTTCTGGACATGCGATGGTGATGCTAGGGAGATTTCTTGC CTTGATTGGTGGAAGACATAAACGTGGACGCCACAATGATGTGCATTTAC TTGATACGGAACTGATGCAATGGACACCAGTTCATCCTAGTGGCACACCA CCAATGCAAAGGAAAACACATGCGGTAGTTCGTCTTGGTGGAGGAGACAG CAAGACAATCCTCATGTTTGGAGGGCACGATGGAAGTGAATGGCTGGGTG ATTTTCATGTCTTAAATCTTGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107904:127..399+

>mRNA_M-pyrifera_M_contig107904.1682.1 ID=mRNA_M-pyrifera_M_contig107904.1682.1|Name=mRNA_M-pyrifera_M_contig107904.1682.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig107904:127..399+ (Macrocystis pyrifera P11B4 male)
ATGGTGATGCTAGGGAGATTTCTTGCCTTGATTGGTGGAAGACATAAACG
TGGACGCCACAATGATGTGCATTTACTTGATACGGAACTGATGCAATGGA
CACCAGTTCATCCTAGTGGCACACCACCAATGCAAAGGAAAACACATGCG
GTAGTTCGTCTTGGTGGAGGAGACAGCAAGACAATCCTCATGTTTGGAGG
GCACGATGGAAGTGAATGGCTGGGTGATTTTCATGTCTTAAATCTTGAAA
TGGTGATGCTAGGGAGATTTCTTGCCTTGATTGGTGGAAGACATAAACGT
GGACGCCACAATGATGTGCATTTACTTGATACGGAACTGATGCAATGGAC
ACCAGTTCATCCTAGTGGCACACCACCAATGCAAAGGAAAACACATGCGG
TAGTTCGTCTTGGTGGAGGAGACAGCAAGACAATCCTCATGTTTGGAGGG
CACGATGGAAGTGAATGGCTGGGTGATTTTCATGTCTTAAATCTTGAA
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