mRNA_M-pyrifera_M_contig1079.1678.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1079.1678.1
Unique NamemRNA_M-pyrifera_M_contig1079.1678.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1079.1678.1 vs. uniprot
Match: D7FNM1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM1_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.420e-29
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 KEEQRLCVVCQENERGVLLLPCRHLCVCRGCSERQELKLCPLCRNNITETLVVYS 165
            KEEQRLCVVCQENER VLLLPCRHLCVCRGCSERQEL LCPLCR++ITE+LVVYS
Sbjct:  135 KEEQRLCVVCQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS 189          
BLAST of mRNA_M-pyrifera_M_contig1079.1678.1 vs. uniprot
Match: A0A7S4DHZ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHZ0_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 9.550e-19
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    4 EEQRLCVVCQENERGVLLLPCRHLCVCRGCSERQELKLCPLCRNNITETLVVYS 165
            +EQ  CV+CQEN + +L+LPCRHLC+C+ CSE   LK CPLCRN+I ETL V+S
Sbjct:  147 DEQNQCVICQENAKSILILPCRHLCLCQSCSENPRLKSCPLCRNDIKETLQVFS 200          
BLAST of mRNA_M-pyrifera_M_contig1079.1678.1 vs. uniprot
Match: A0A7S2G914_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G914_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.020e-17
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 KEEQRLCVVCQENERGVLLLPCRHLCVCRGCSERQELKLCPLCRNNITETLVVYS 165
            + EQRLCVVCQE E+  L+LPCRHLC+C+ CS R ELK CPLCR  I + + VY+
Sbjct:  144 EREQRLCVVCQEREKSCLILPCRHLCLCKDCSRRSELKSCPLCRKPIEQKIDVYA 198          
BLAST of mRNA_M-pyrifera_M_contig1079.1678.1 vs. uniprot
Match: A0A7S2C4Y0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C4Y0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.390e-17
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 KEEQRLCVVCQENERGVLLLPCRHLCVCRGCSERQELKLCPLCRNNITETLVVYS 165
            + +QRLCV+CQENE+  LLLPCRHLC+C+ CS R+EL  CPLCR  I + + V++
Sbjct:  126 ERDQRLCVICQENEKNTLLLPCRHLCLCKECSRREELDKCPLCRKGIDQKIDVFA 180          
BLAST of mRNA_M-pyrifera_M_contig1079.1678.1 vs. uniprot
Match: A0A482S6W3_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6W3_9ARCH)

HSP 1 Score: 79.3 bits (194), Expect = 1.450e-17
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 KEEQRLCVVCQENERGVLLLPCRHLCVCRGCSERQELKLCPLCRNNITETLVVYS 165
            ++EQRLCV+CQENE+ V+LLPCRHLC+C GCS    L +CPLCR  I   + V+S
Sbjct:   83 QKEQRLCVICQENEKTVVLLPCRHLCLCDGCSVHSALDMCPLCREAIVHKISVFS 137          
BLAST of mRNA_M-pyrifera_M_contig1079.1678.1 vs. uniprot
Match: A0A482S078_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S078_9ARCH)

HSP 1 Score: 76.3 bits (186), Expect = 3.690e-17
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    7 EQRLCVVCQENERGVLLLPCRHLCVCRGCSERQELKLCPLCRNNITETLVVY 162
            +QRLC +C E++R VLL+PCRHLC+C  CSE+  L+LCP+CRN I E + V+
Sbjct:   13 QQRLCTICMEDDRTVLLMPCRHLCLCSKCSEQSMLQLCPICRNRIQEKVTVF 64          
BLAST of mRNA_M-pyrifera_M_contig1079.1678.1 vs. uniprot
Match: A0A7S3H223_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H223_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.090e-16
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 KEEQRLCVVCQENERGVLLLPCRHLCVCRGCSERQELKLCPLCRNNITETLVVYS 165
            ++EQR+CVVCQE+E+ V+LLPCRHLCVC  CS    LK+CPLCR  I   + V+S
Sbjct:   80 QKEQRVCVVCQEHEKSVVLLPCRHLCVCDVCSTHDLLKMCPLCREPIAHKISVFS 134          
BLAST of mRNA_M-pyrifera_M_contig1079.1678.1 vs. uniprot
Match: A0A7S3XJT7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJT7_HETAK)

HSP 1 Score: 74.3 bits (181), Expect = 3.310e-15
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    4 EEQRLCVVCQENERGVLLLPCRHLCVCRGCSERQELKLCPLCRNNITETLVVY 162
            E   +CVVCQE+ + VL+LPCRHLC+C+GCSE Q L+ CPLCR NI   +  +
Sbjct:  125 EASTVCVVCQEHAKSVLILPCRHLCLCQGCSENQLLRTCPLCRENIESKIQTF 177          
BLAST of mRNA_M-pyrifera_M_contig1079.1678.1 vs. uniprot
Match: M4BY57_HYAAE (RING-type domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BY57_HYAAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.450e-15
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 KEEQRLCVVCQENERGVLLLPCRHLCVCRGCSERQELKLCPLCRNNITETLVVYS 165
            + E +LCV+C  NE+ +L LPCRHLC+C  C+ RQE+  CP+CR  I E L VYS
Sbjct:   79 QNELKLCVICLANEKRILCLPCRHLCLCETCAYRQEVTKCPICRLEIAEVLAVYS 133          
BLAST of mRNA_M-pyrifera_M_contig1079.1678.1 vs. uniprot
Match: A0A4W6D907_LATCA (RING-type domain-containing protein n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6D907_LATCA)

HSP 1 Score: 72.0 bits (175), Expect = 3.530e-15
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 KEEQRLCVVCQENERGVLLLPCRHLCVCRGCSE--RQELKLCPLCRNNITETLVVY 162
            +EE++ CVVCQ+  + VLLLPCRHLC+CR C++   Q  + CPLCR NIT+TL V+
Sbjct:   36 QEERKKCVVCQDLSKTVLLLPCRHLCLCRHCADILTQRRRCCPLCRQNITQTLDVF 91          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1079.1678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNM1_ECTSI4.420e-2990.91RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S4DHZ0_HETAK9.550e-1962.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G914_9STRA1.020e-1761.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C4Y0_9STRA1.390e-1758.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482S6W3_9ARCH1.450e-1760.00RING-type domain-containing protein n=1 Tax=archae... [more]
A0A482S078_9ARCH3.690e-1757.69RING-type domain-containing protein n=1 Tax=archae... [more]
A0A7S3H223_9STRA1.090e-1660.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3XJT7_HETAK3.310e-1556.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
M4BY57_HYAAE3.450e-1554.55RING-type domain-containing protein n=1 Tax=Hyalop... [more]
A0A4W6D907_LATCA3.530e-1557.14RING-type domain-containing protein n=1 Tax=Lates ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1079contigM-pyrifera_M_contig1079:438..1210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D7FNM1
KEGG koko:K15693
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0008270,GO:0043167,GO:0043169,GO:0046872,GO:0046914
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG4265@1,KOG4265@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons2
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.4146225-CDS-M-pyrifera_M_contig1079:437..5721622815588.4146225-CDS-M-pyrifera_M_contig1079:437..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1079 438..572 -
1692277476.669455-CDS-M-pyrifera_M_contig1079:437..5721692277476.669455-CDS-M-pyrifera_M_contig1079:437..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1079 438..572 -
1622815588.427067-CDS-M-pyrifera_M_contig1079:1177..12101622815588.427067-CDS-M-pyrifera_M_contig1079:1177..1210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1079 1178..1210 -
1692277476.6822083-CDS-M-pyrifera_M_contig1079:1177..12101692277476.6822083-CDS-M-pyrifera_M_contig1079:1177..1210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1079 1178..1210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1079.1678.1prot_M-pyrifera_M_contig1079.1678.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1079 438..1210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1079.1678.1

>prot_M-pyrifera_M_contig1079.1678.1 ID=prot_M-pyrifera_M_contig1079.1678.1|Name=mRNA_M-pyrifera_M_contig1079.1678.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
KEEQRLCVVCQENERGVLLLPCRHLCVCRGCSERQELKLCPLCRNNITET
LVVYS*
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mRNA from alignment at M-pyrifera_M_contig1079:438..1210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1079.1678.1 ID=mRNA_M-pyrifera_M_contig1079.1678.1|Name=mRNA_M-pyrifera_M_contig1079.1678.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=773bp|location=Sequence derived from alignment at M-pyrifera_M_contig1079:438..1210- (Macrocystis pyrifera P11B4 male)
AAGGAAGAGCAAAGACTCTGTGTCGTGTGCCAGGTAAAAATGACGCCGGC TAGTCAGACGCCCTTAAGATTGCATCGGTTTAATATCGCAACGGTGCGAA TGCAGCAATCGAACCATGGAATTTTCTCTCGAAGGACTGGGTTTTGTTTG CGAATGTCACTGGAGAGGGGAAAGGGGAGGGTGGGGCGGGGCGGGGCGGG GGGGAGTACTTGAGGACGTTGTGCGGAACTTTCACAATAGGCGTGAGAGG GCATAGATGTGAGCATTAAAACAACGCACGCTTCCTGCGTTCTCGCGACC GACCGCGCGGCGGCTATCCACCAGCCGGCCTGCGACCGACAGCATTTTTC TTTTCTTCTTGTTACTCCCCCCCCCCCCCTTTCCTTATGGGCGTCATGAA TATAATTGAAAAGTGTTGCCACCAGTTCTTTAAACAACCACCTTATACAC TTGTATCCAGCCTGTACGACAGTAGTAAACCCACACTCCATTCAATGTTC AGAAACAACCTTTGCGAACTCGAAAGACGATTTGGACGACTTTTTGGCTG GACCACACTCGTTGCTGCCCTATGCCGCTGTCGACGAAAGGCGCCCCCCC CTCCACCCCCACCATCCTACCTCCCGCTTACCCGACAGGAGAACGAGCGA GGGGTGTTGCTCTTGCCTTGCCGACACCTGTGCGTCTGTAGGGGATGCTC CGAGCGACAAGAGCTGAAGCTGTGTCCGCTTTGCCGAAACAACATCACCG AGACCCTCGTCGTGTACTCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1079:438..1210-

>mRNA_M-pyrifera_M_contig1079.1678.1 ID=mRNA_M-pyrifera_M_contig1079.1678.1|Name=mRNA_M-pyrifera_M_contig1079.1678.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig1079:438..1210- (Macrocystis pyrifera P11B4 male)
AAGGAAGAGCAAAGACTCTGTGTCGTGTGCCAGAAGGAAGAGCAAAGACT
CTGTGTCGTGTGCCAGGAGAACGAGCGAGGGGTGTTGCTCTTGCCTTGCC
GACACCTGTGCGTCTGTAGGGGATGCTCCGAGCGACAAGAGCTGAAGCTG
TGTCCGCTTTGCCGAAACAACATCACCGAGACCCTCGTCGTGTACTCTTA
GGAGAACGAGCGAGGGGTGTTGCTCTTGCCTTGCCGACACCTGTGCGTCT
GTAGGGGATGCTCCGAGCGACAAGAGCTGAAGCTGTGTCCGCTTTGCCGA
AACAACATCACCGAGACCCTCGTCGTGTACTCTTAG
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