mRNA_M-pyrifera_M_contig107890.1677.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107890.1677.1
Unique NamemRNA_M-pyrifera_M_contig107890.1677.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107890.1677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107890contigM-pyrifera_M_contig107890:298..609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.3683739-CDS-M-pyrifera_M_contig107890:297..6091622815588.3683739-CDS-M-pyrifera_M_contig107890:297..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107890 298..609 -
1692277476.6469514-CDS-M-pyrifera_M_contig107890:297..6091692277476.6469514-CDS-M-pyrifera_M_contig107890:297..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107890 298..609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107890.1677.1prot_M-pyrifera_M_contig107890.1677.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107890 298..609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107890.1677.1

>prot_M-pyrifera_M_contig107890.1677.1 ID=prot_M-pyrifera_M_contig107890.1677.1|Name=mRNA_M-pyrifera_M_contig107890.1677.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
SPDLGQSFTLTATPSFAPGGFLAICSQQADFPLFGGQALVDPTKQLFALK
FAVLSGGSSTWTLDVPTTPTLAGLVVYTQALALDPAQAGGYALSNGVEIT
LCP*
back to top

mRNA from alignment at M-pyrifera_M_contig107890:298..609-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107890.1677.1 ID=mRNA_M-pyrifera_M_contig107890.1677.1|Name=mRNA_M-pyrifera_M_contig107890.1677.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig107890:298..609- (Macrocystis pyrifera P11B4 male)
TCCCCCGACCTCGGCCAGAGCTTCACGCTGACCGCGACCCCGAGCTTCGC
GCCGGGCGGCTTCCTTGCGATCTGCTCCCAGCAGGCCGACTTCCCGCTGT
TCGGCGGCCAGGCGCTGGTCGACCCGACCAAGCAGCTCTTCGCGCTGAAG
TTCGCGGTGCTGTCCGGCGGCAGCTCGACCTGGACCCTCGACGTGCCGAC
GACGCCGACCCTGGCCGGCCTGGTGGTCTACACCCAGGCGCTGGCGCTCG
ACCCGGCCCAGGCGGGCGGCTACGCGCTGTCGAACGGCGTCGAGATCACG
CTCTGCCCCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig107890:298..609-

>mRNA_M-pyrifera_M_contig107890.1677.1 ID=mRNA_M-pyrifera_M_contig107890.1677.1|Name=mRNA_M-pyrifera_M_contig107890.1677.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig107890:298..609- (Macrocystis pyrifera P11B4 male)
TCCCCCGACCTCGGCCAGAGCTTCACGCTGACCGCGACCCCGAGCTTCGC
GCCGGGCGGCTTCCTTGCGATCTGCTCCCAGCAGGCCGACTTCCCGCTGT
TCGGCGGCCAGGCGCTGGTCGACCCGACCAAGCAGCTCTTCGCGCTGAAG
TTCGCGGTGCTGTCCGGCGGCAGCTCGACCTGGACCCTCGACGTGCCGAC
GACGCCGACCCTGGCCGGCCTGGTGGTCTACACCCAGGCGCTGGCGCTCG
ACCCGGCCCAGGCGGGCGGCTACGCGCTGTCGAACGGCGTCGAGATCACG
CTCTGCCCCTGATCCCCCGACCTCGGCCAGAGCTTCACGCTGACCGCGAC
CCCGAGCTTCGCGCCGGGCGGCTTCCTTGCGATCTGCTCCCAGCAGGCCG
ACTTCCCGCTGTTCGGCGGCCAGGCGCTGGTCGACCCGACCAAGCAGCTC
TTCGCGCTGAAGTTCGCGGTGCTGTCCGGCGGCAGCTCGACCTGGACCCT
CGACGTGCCGACGACGCCGACCCTGGCCGGCCTGGTGGTCTACACCCAGG
CGCTGGCGCTCGACCCGGCCCAGGCGGGCGGCTACGCGCTGTCGAACGGC
GTCGAGATCACGCTCTGCCCCTGA
back to top