mRNA_M-pyrifera_M_contig107888.1676.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107888.1676.1
Unique NamemRNA_M-pyrifera_M_contig107888.1676.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107888.1676.1 vs. uniprot
Match: A0A293LTN2_ORNER (Mitochondrial brown fat uncoupling protein 1 (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LTN2_ORNER)

HSP 1 Score: 111 bits (278), Expect = 2.240e-28
Identity = 60/121 (49.59%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 QRSLRLSAVAAGTAACVAEALTMPFDTAKVRLQMQGVGVRTGGPKKYRNVLQTMRTVAFEEGATRLYAGLPAALARQACFTTLRLGLYDPVRDRVSAAL--DAPGASPSVATRVVAGVVTG 357
            Q SL +  V AGTAAC+A+ +T P D AKVRLQ+QG G++ G  K+YR V  T+ T+A +EG   LY GL   L RQACF T+R+GLYD VRD  +  L     GA+  +  R++AG+ TG
Sbjct:    8 QHSLTVKLVGAGTAACIADVITFPLDVAKVRLQIQGEGLKAGAAKQYRGVFGTIATIAKKEGPRCLYNGLVPGLQRQACFATVRIGLYDGVRDSYTRVLLSSNSGAASILGVRILAGITTG 128          
BLAST of mRNA_M-pyrifera_M_contig107888.1676.1 vs. uniprot
Match: A0A293LEH4_ORNER (Oxoglutarate/malate carrier protein (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A293LEH4_ORNER)

HSP 1 Score: 111 bits (278), Expect = 4.050e-27
Identity = 60/121 (49.59%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 QRSLRLSAVAAGTAACVAEALTMPFDTAKVRLQMQGVGVRTGGPKKYRNVLQTMRTVAFEEGATRLYAGLPAALARQACFTTLRLGLYDPVRDRVSAAL--DAPGASPSVATRVVAGVVTG 357
            Q SL +  V AGTAAC+A+ +T P D AKVRLQ+QG G++ G  K+YR V  T+ T+A +EG   LY GL   L RQACF T+R+GLYD VRD  +  L     GA+  +  R++AG+ TG
Sbjct:    8 QHSLTVKLVGAGTAACIADVITFPLDVAKVRLQIQGEGLKAGAAKQYRGVFGTIATIAKKEGPRCLYNGLVPGLQRQACFATVRIGLYDGVRDSYTRVLLSSNSGAASILGVRILAGITTG 128          
BLAST of mRNA_M-pyrifera_M_contig107888.1676.1 vs. uniprot
Match: B7PD13_IXOSC (Mitochondrial brown fat uncoupling protein 1 n=7 Tax=Ixodes TaxID=6944 RepID=B7PD13_IXOSC)

HSP 1 Score: 107 bits (267), Expect = 1.120e-25
Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   25 VAAGTAACVAEALTMPFDTAKVRLQMQGVGVRTGGPKKYRNVLQTMRTVAFEEGATRLYAGLPAALARQACFTTLRLGLYDPVRDRVSAALDAPGASPSVATRVVAGVVTG 357
            V AG+AAC+A+A+T P D AKVRLQ+QG G ++G  K+YR VL T+ T+A +EG +RLY GL   L RQACF T+R+G YD V+D  S A+ A      +  R++A V TG
Sbjct:   16 VGAGSAACIADAITFPLDVAKVRLQLQGEGAQSGAVKQYRGVLGTVVTIAKQEGPSRLYGGLGPGLQRQACFATVRIGFYDSVKDAYSKAILAA----MMGVRILAAVTTG 122          
BLAST of mRNA_M-pyrifera_M_contig107888.1676.1 vs. uniprot
Match: A0A078ANY6_STYLE (Uncharacterized protein n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A078ANY6_STYLE)

HSP 1 Score: 100 bits (248), Expect = 5.030e-23
Identity = 54/111 (48.65%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   25 VAAGTAACVAEALTMPFDTAKVRLQMQGVGVRTGGPKKYRNVLQTMRTVAFEEGATRLYAGLPAALARQACFTTLRLGLYDPVRDRVSAALDAPGASPSVATRVVAGVVTG 357
            +AA TA CVAE  T+P DTAKVRLQ+QG  +      KY+  + TM+T+  EEG   LY GL A L RQ  F  LR+GLY PVR+ ++  L  PG +P++ T+++AG+ TG
Sbjct:   20 LAASTAGCVAEIATIPIDTAKVRLQIQGKNIDPSIKPKYQGFMGTMKTITAEEGPRALYNGLAAGLQRQVLFAGLRIGLYIPVRNMIAGELK-PGENPTLKTKILAGLCTG 129          
BLAST of mRNA_M-pyrifera_M_contig107888.1676.1 vs. uniprot
Match: A0A1Z5L9H8_ORNMO (Mitochondrial brown fat uncoupling protein 1 (Fragment) n=2 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L9H8_ORNMO)

HSP 1 Score: 100 bits (249), Expect = 6.170e-23
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 QRSLRLSAVAAGTAACVAEALTMPFDTAKVRLQMQGVGVRTGGPKKYRNVLQTMRTVAFEEGATRLYAGLPAALARQACFTTLRLGLYDPVRD---RVSAALDAPGASPSVATRVVAGVVTG 357
            Q S+ +  ++AG+AAC+A+ +T P D AKVRLQ+QG G++    K+Y  V  T+ T+A  EG   LY GL   L RQACF T+R+GLYD VRD   RV  + D+ GAS  +A R++AG+ TG
Sbjct:    8 QHSVIVKLISAGSAACIADLMTFPLDVAKVRLQIQGEGLKAS--KQYSGVFGTIATIAKNEGPRCLYNGLIPGLQRQACFATVRIGLYDGVRDSYTRVLLSSDSSGASV-LAVRILAGITTG 126          
BLAST of mRNA_M-pyrifera_M_contig107888.1676.1 vs. uniprot
Match: A0A7J8IEI9_MOLMO (Mitochondrial brown fat uncoupling protein 1 n=2 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8IEI9_MOLMO)

HSP 1 Score: 99.4 bits (246), Expect = 9.540e-23
Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    7 SLRLSAVAAGTAACVAEALTMPFDTAKVRLQMQGVGVRTGGPKKYRNVLQTMRTVAFEEGATRLYAGLPAALARQACFTTLRLGLYDPVRDRVSAALDAPGASPSVATRVVAGVVTG 357
            S+ +   +AG  ACVA+ +T P DTAKVRLQ+QG    +G PK Y+ VL T+ T+A  EG  +LY+GLPA L RQ  F +LR+GLYD V +  +A     G  P++ +R++AG+ TG
Sbjct:   13 SMAIKIFSAGAGACVADVITFPLDTAKVRLQIQGESPASGAPK-YKGVLGTITTLAKTEGPVKLYSGLPAGLQRQISFASLRIGLYDTVGEFFAA-----GKDPTLGSRILAGLSTG 123          
BLAST of mRNA_M-pyrifera_M_contig107888.1676.1 vs. uniprot
Match: A0A8I3S4I6_CANLF (Mitochondrial brown fat uncoupling protein 1 n=2 Tax=Canis lupus familiaris TaxID=9615 RepID=A0A8I3S4I6_CANLF)

HSP 1 Score: 97.1 bits (240), Expect = 7.170e-22
Identity = 60/120 (50.00%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    7 SLRLSAVAAGTAACVAEALTMPFDTAKVRLQMQGVGVRTGGPKK---YRNVLQTMRTVAFEEGATRLYAGLPAALARQACFTTLRLGLYDPVRDRVSAALDAPGASPSVATRVVAGVVTG 357
            +L +   AA  AAC+A+ LT P DTAKVRLQ+QG G   G P +   YR VL T+ T+A  EG  +LY+GLPA L RQ  F +LR+GLYD VR+ +S      GA+ S+ +R+ AGV+TG
Sbjct:   12 TLSVRIAAAAGAACLADLLTFPLDTAKVRLQIQGEG--QGQPPRAPRYRGVLGTVATLARTEGLQKLYSGLPAGLQRQVGFASLRIGLYDSVREWLS---PGQGAAASLGSRISAGVMTG 126          
BLAST of mRNA_M-pyrifera_M_contig107888.1676.1 vs. uniprot
Match: UPI001425558C (mitochondrial uncoupling protein 2-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425558C)

HSP 1 Score: 96.7 bits (239), Expect = 1.210e-21
Identity = 55/122 (45.08%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   25 VAAGTAACVAEALTMPFDTAKVRLQMQGVGVRTG-----------GPKKYRNVLQTMRTVAFEEGATRLYAGLPAALARQACFTTLRLGLYDPVRDRVSAALDAPGASPSVATRVVAGVVTG 357
            V+AGTAAC+A+ +T P DTAKVRLQ+QG G R G              +YR V  T+ T+  +EGA  +Y GL A L RQACF ++R+GLYD V+ + +   D  G   +V  R+ AG+ TG
Sbjct:   20 VSAGTAACMADIITFPLDTAKVRLQIQGEGTRLGKLSIAALSEQRAQFQYRGVYGTLVTIVKQEGARGMYNGLVAGLQRQACFASVRIGLYDSVKQKYT---DFAGGKTNVLVRIAAGITTG 138          
BLAST of mRNA_M-pyrifera_M_contig107888.1676.1 vs. uniprot
Match: UCP1_CANLF (Mitochondrial brown fat uncoupling protein 1 n=6 Tax=Canidae TaxID=9608 RepID=UCP1_CANLF)

HSP 1 Score: 96.3 bits (238), Expect = 1.470e-21
Identity = 59/120 (49.17%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    7 SLRLSAVAAGTAACVAEALTMPFDTAKVRLQMQGVGVRTGGPKK---YRNVLQTMRTVAFEEGATRLYAGLPAALARQACFTTLRLGLYDPVRDRVSAALDAPGASPSVATRVVAGVVTG 357
            +L +   AA  AAC+A+ +T P DTAKVRLQ+QG G   G P +   YR VL T+ T+A  EG  +LY+GLPA L RQ  F +LR+GLYD VR+ +S      GA+ S+ +R+ AGV+TG
Sbjct:   12 TLSVRIAAAAGAACLADMITFPLDTAKVRLQIQGEG--QGQPPRAPRYRGVLGTVATLARTEGLQKLYSGLPAGLQRQVGFASLRIGLYDSVREWLS---PGQGAAASLGSRISAGVMTG 126          
BLAST of mRNA_M-pyrifera_M_contig107888.1676.1 vs. uniprot
Match: M1J8L0_ECHTE (Mitochondrial brown fat uncoupling protein 1 n=1 Tax=Echinops telfairi TaxID=9371 RepID=M1J8L0_ECHTE)

HSP 1 Score: 95.5 bits (236), Expect = 2.740e-21
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   31 AGTAACVAEALTMPFDTAKVRLQMQGVGVRTGGPKKYRNVLQTMRTVAFEEGATRLYAGLPAALARQACFTTLRLGLYDPVRDRVSAALDAPGASPSVATRVVAGVVTG 357
            AG +AC+A+ +T P DTAKVRLQ+QG    + G K Y+ VL T++T+A  EG  +LY+GLPA + RQ  F +LR+GLYD V++  +A  DAP    ++  R+ AG+ TG
Sbjct:   20 AGVSACLADLITFPLDTAKVRLQIQGESPTSSGIK-YKGVLGTIKTLARTEGMVKLYSGLPAGIQRQISFASLRIGLYDTVQEYFTAGKDAPA---TLGNRISAGLTTG 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107888.1676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A293LTN2_ORNER2.240e-2849.59Mitochondrial brown fat uncoupling protein 1 (Frag... [more]
A0A293LEH4_ORNER4.050e-2749.59Oxoglutarate/malate carrier protein (Fragment) n=2... [more]
B7PD13_IXOSC1.120e-2551.35Mitochondrial brown fat uncoupling protein 1 n=7 T... [more]
A0A078ANY6_STYLE5.030e-2348.65Uncharacterized protein n=2 Tax=Oxytrichidae TaxID... [more]
A0A1Z5L9H8_ORNMO6.170e-2348.36Mitochondrial brown fat uncoupling protein 1 (Frag... [more]
A0A7J8IEI9_MOLMO9.540e-2347.01Mitochondrial brown fat uncoupling protein 1 n=2 T... [more]
A0A8I3S4I6_CANLF7.170e-2250.00Mitochondrial brown fat uncoupling protein 1 n=2 T... [more]
UPI001425558C1.210e-2145.08mitochondrial uncoupling protein 2-like n=1 Tax=An... [more]
UCP1_CANLF1.470e-2149.17Mitochondrial brown fat uncoupling protein 1 n=6 T... [more]
M1J8L0_ECHTE2.740e-2147.71Mitochondrial brown fat uncoupling protein 1 n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107888contigM-pyrifera_M_contig107888:260..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score99.8
Seed ortholog evalue9.4e-19
Seed eggNOG ortholog126957.SMAR011522-PA
KEGG koko:K15103
KEGG TC2.A.29.3.3,2.A.29.3.4,2.A.29.3.5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGs39BBG@33154,3B9D8@33208,3CX4V@33213,41TC4@6656,KOG0753@2759,KOG0759@1
COG Functional cat.C
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.3250918-CDS-M-pyrifera_M_contig107888:259..6161622815588.3250918-CDS-M-pyrifera_M_contig107888:259..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107888 260..616 +
1692277476.6251757-CDS-M-pyrifera_M_contig107888:259..6161692277476.6251757-CDS-M-pyrifera_M_contig107888:259..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107888 260..616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107888.1676.1prot_M-pyrifera_M_contig107888.1676.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107888 260..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107888.1676.1

>prot_M-pyrifera_M_contig107888.1676.1 ID=prot_M-pyrifera_M_contig107888.1676.1|Name=mRNA_M-pyrifera_M_contig107888.1676.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
QRSLRLSAVAAGTAACVAEALTMPFDTAKVRLQMQGVGVRTGGPKKYRNV
LQTMRTVAFEEGATRLYAGLPAALARQACFTTLRLGLYDPVRDRVSAALD
APGASPSVATRVVAGVVTG
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mRNA from alignment at M-pyrifera_M_contig107888:260..616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107888.1676.1 ID=mRNA_M-pyrifera_M_contig107888.1676.1|Name=mRNA_M-pyrifera_M_contig107888.1676.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig107888:260..616+ (Macrocystis pyrifera P11B4 male)
CAGAGGAGCTTGAGGCTAAGCGCAGTGGCGGCCGGCACAGCCGCATGTGT TGCGGAGGCGTTGACCATGCCTTTCGACACCGCCAAGGTGCGGCTGCAGA TGCAGGGCGTCGGCGTCCGCACCGGAGGACCCAAGAAGTACCGCAATGTG TTGCAGACGATGCGCACTGTGGCGTTCGAAGAAGGGGCCACGCGTTTGTA CGCTGGTCTCCCTGCCGCACTTGCGCGCCAAGCTTGCTTCACAACTCTCC GCCTCGGCCTGTACGACCCAGTTCGAGATCGTGTGTCCGCTGCGCTGGAC GCGCCCGGCGCGTCGCCCAGCGTAGCGACCCGGGTTGTGGCCGGCGTGGT CACCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107888:260..616+

>mRNA_M-pyrifera_M_contig107888.1676.1 ID=mRNA_M-pyrifera_M_contig107888.1676.1|Name=mRNA_M-pyrifera_M_contig107888.1676.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig107888:260..616+ (Macrocystis pyrifera P11B4 male)
CAGAGGAGCTTGAGGCTAAGCGCAGTGGCGGCCGGCACAGCCGCATGTGT
TGCGGAGGCGTTGACCATGCCTTTCGACACCGCCAAGGTGCGGCTGCAGA
TGCAGGGCGTCGGCGTCCGCACCGGAGGACCCAAGAAGTACCGCAATGTG
TTGCAGACGATGCGCACTGTGGCGTTCGAAGAAGGGGCCACGCGTTTGTA
CGCTGGTCTCCCTGCCGCACTTGCGCGCCAAGCTTGCTTCACAACTCTCC
GCCTCGGCCTGTACGACCCAGTTCGAGATCGTGTGTCCGCTGCGCTGGAC
GCGCCCGGCGCGTCGCCCAGCGTAGCGACCCGGGTTGTGGCCGGCGTGGT
CACCGGCCAGAGGAGCTTGAGGCTAAGCGCAGTGGCGGCCGGCACAGCCG
CATGTGTTGCGGAGGCGTTGACCATGCCTTTCGACACCGCCAAGGTGCGG
CTGCAGATGCAGGGCGTCGGCGTCCGCACCGGAGGACCCAAGAAGTACCG
CAATGTGTTGCAGACGATGCGCACTGTGGCGTTCGAAGAAGGGGCCACGC
GTTTGTACGCTGGTCTCCCTGCCGCACTTGCGCGCCAAGCTTGCTTCACA
ACTCTCCGCCTCGGCCTGTACGACCCAGTTCGAGATCGTGTGTCCGCTGC
GCTGGACGCGCCCGGCGCGTCGCCCAGCGTAGCGACCCGGGTTGTGGCCG
GCGTGGTCACCGGC
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