mRNA_M-pyrifera_M_contig107881.1673.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107881.1673.1
Unique NamemRNA_M-pyrifera_M_contig107881.1673.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107881.1673.1 vs. uniprot
Match: A0A8J2LKU2_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2LKU2_9HEXA)

HSP 1 Score: 74.7 bits (182), Expect = 4.190e-14
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   10 LEVFIIAHSHCDPGWLMSYESYYRTRVKNILDSVLVHL-KHGDRKFNWSESSFLQRWYTGGYP 195
            L+VF+I HSH DPGWL ++E Y+ +  KNILD+ +  L +H +  F WSE SFL +W+ G +P
Sbjct:  161 LKVFVIPHSHNDPGWLKTFEGYFHSHTKNILDNAVDKLTEHRNMTFLWSEISFLSKWWNGAHP 223          
BLAST of mRNA_M-pyrifera_M_contig107881.1673.1 vs. uniprot
Match: A0A0N4Y813_NIPBR (Glyco_hydro_38N domain-containing protein n=1 Tax=Nippostrongylus brasiliensis TaxID=27835 RepID=A0A0N4Y813_NIPBR)

HSP 1 Score: 72.0 bits (175), Expect = 1.080e-13
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 EGELEVFIIAHSHCDPGWLMSYESYYRTRVKNILDSVLVHL--KHGDRKFNWSESSFLQRWY 180
            E  LEV +I HSHCDPGWL ++E YY ++ KNIL+ ++ HL  K  D +F ++E SF + W+
Sbjct:  165 ENTLEVIVIPHSHCDPGWLKTFEEYYHSQAKNILNGMVNHLGEKQKDMRFIYAEMSFFEMWW 226          
BLAST of mRNA_M-pyrifera_M_contig107881.1673.1 vs. uniprot
Match: A0A6A4JEA7_APOLU (Glyco_hydro_38N domain-containing protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4JEA7_APOLU)

HSP 1 Score: 70.9 bits (172), Expect = 1.280e-13
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 EGELEVFIIAHSHCDPGWLMSYESYYRTRVKNILDSVLVHLKHG-DRKFNWSESSFLQRWYT 183
            E +L VF++ HSH DPGWL ++E+YY TR +NIL+++++ L+     KF W+E SF   W+T
Sbjct:  113 EHKLRVFVVPHSHNDPGWLKTFENYYETRTRNILENMVLKLEENRSMKFIWAEISFFALWWT 174          
BLAST of mRNA_M-pyrifera_M_contig107881.1673.1 vs. uniprot
Match: A0A2K1IIR4_PHYPA (Alpha-mannosidase n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IIR4_PHYPA)

HSP 1 Score: 72.8 bits (177), Expect = 1.990e-13
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 EGELEVFIIAHSHCDPGWLMSYESYYRTRVKNILDSVLVHL-KHGDRKFNWSESSFLQRWYTGGYP 195
            E +L+VF++ HSH DPGW+ + E YY+ R ++ILD+V+  L K   RKF W E S+L+RW+    P
Sbjct:  147 EEKLKVFVVPHSHNDPGWIRTVEEYYQERTRHILDTVVASLLKDPRRKFIWEEMSYLERWWRDATP 212          
BLAST of mRNA_M-pyrifera_M_contig107881.1673.1 vs. uniprot
Match: A0A7R9B9B4_TIMSH (Hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9B9B4_TIMSH)

HSP 1 Score: 70.9 bits (172), Expect = 2.260e-13
Identity = 28/59 (47.46%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    7 ELEVFIIAHSHCDPGWLMSYESYYRTRVKNILDSVLVHLKHGDR-KFNWSESSFLQRWY 180
            +L VF++ HSH DPGW+ +YE YY ++ +NIL++++  L+  DR KF W+E+SFL  W+
Sbjct:  149 KLRVFVVPHSHNDPGWIKTYEDYYHSQTRNILNNMIKKLREDDRRKFIWAETSFLALWW 207          
BLAST of mRNA_M-pyrifera_M_contig107881.1673.1 vs. uniprot
Match: A0A336L7N9_CULSO (Alpha-mannosidase (Fragment) n=2 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336L7N9_CULSO)

HSP 1 Score: 72.0 bits (175), Expect = 3.710e-13
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 EGELEVFIIAHSHCDPGWLMSYESYYRTRVKNILDSVLVHL-KHGDRKFNWSESSFLQRWYTG 186
            E +L VF++ HSH DPGWL +++ YY    ++IL+++L +L  H + KF W+E SF  RWY G
Sbjct:   75 ENKLHVFVVPHSHNDPGWLRTFDEYYHYATRHILNNMLTNLHNHKEMKFIWAEISFFSRWYEG 137          
BLAST of mRNA_M-pyrifera_M_contig107881.1673.1 vs. uniprot
Match: A0A0L0DWA8_THETB (Alpha-mannosidase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DWA8_THETB)

HSP 1 Score: 72.0 bits (175), Expect = 3.720e-13
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    7 ELEVFIIAHSHCDPGWLMSYESYYRTRVKNILDSVLVHLKH-GDRKFNWSESSFLQRWYT 183
            EL VFI+AHSHCDPGWL ++E Y++  V  IL +V+  L+    R+F W+E SF  RWY+
Sbjct:   43 ELNVFILAHSHCDPGWLNTFEGYFQRDVNAILSNVVTALQQDARRRFIWAEISFFSRWYS 102          
BLAST of mRNA_M-pyrifera_M_contig107881.1673.1 vs. uniprot
Match: A0A0H5RPJ4_9EUKA (Alpha-mannosidase n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RPJ4_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 3.720e-13
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   16 VFIIAHSHCDPGWLMSYESYYRTRVKNILDSVLVHLKHGD-RKFNWSESSFLQRWY 180
            V I+ HSHCDPGWL +YE+Y+R  V  IL  V   LK  D RKF WSE+SF   WY
Sbjct:   28 VHILPHSHCDPGWLETYETYFRQDVSTILSDVFDQLKRNDARKFVWSETSFFSTWY 83          
BLAST of mRNA_M-pyrifera_M_contig107881.1673.1 vs. uniprot
Match: A0A811L3B1_9BILA (Alpha-mannosidase n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811L3B1_9BILA)

HSP 1 Score: 72.0 bits (175), Expect = 3.720e-13
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 EGELEVFIIAHSHCDPGWLMSYESYYRTRVKNILDSVLVHL-KHGDRKFNWSESSFLQRWYT 183
            E +LEV +I HSHCDPGWL ++E YY+ + KNILD +  +L +  D KF ++E SF + W++
Sbjct:  170 EKKLEVVVIPHSHCDPGWLQTFEGYYKAQTKNILDGMATNLAEKPDMKFIYAEMSFFELWWS 231          
BLAST of mRNA_M-pyrifera_M_contig107881.1673.1 vs. uniprot
Match: A0A2P6N5N2_9EUKA (Alpha-mannosidase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N5N2_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 5.080e-13
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 EGELEVFIIAHSHCDPGWLMSYESYYRTRVKNILDSVLVHL-KHGDRKFNWSESSFLQRWY 180
            E  L++ II HSHCDPGWL S++ YY+  VK+IL++VL  L +   R FNW+E SF   W+
Sbjct:   42 EERLDIHIIPHSHCDPGWLKSFDGYYQESVKHILNNVLDTLSRDSSRTFNWAEISFFNMWW 102          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107881.1673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2LKU2_9HEXA4.190e-1449.21Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A0N4Y813_NIPBR1.080e-1348.39Glyco_hydro_38N domain-containing protein n=1 Tax=... [more]
A0A6A4JEA7_APOLU1.280e-1346.77Glyco_hydro_38N domain-containing protein n=1 Tax=... [more]
A0A2K1IIR4_PHYPA1.990e-1346.97Alpha-mannosidase n=3 Tax=Physcomitrium patens Tax... [more]
A0A7R9B9B4_TIMSH2.260e-1347.46Hypothetical protein n=2 Tax=Timema TaxID=61471 Re... [more]
A0A336L7N9_CULSO3.710e-1346.03Alpha-mannosidase (Fragment) n=2 Tax=Culicoides so... [more]
A0A0L0DWA8_THETB3.720e-1351.67Alpha-mannosidase n=1 Tax=Thecamonas trahens ATCC ... [more]
A0A0H5RPJ4_9EUKA3.720e-1357.14Alpha-mannosidase n=1 Tax=Spongospora subterranea ... [more]
A0A811L3B1_9BILA3.720e-1348.39Alpha-mannosidase n=1 Tax=Bursaphelenchus okinawae... [more]
A0A2P6N5N2_9EUKA5.080e-1350.82Alpha-mannosidase n=1 Tax=Planoprotostelium fungiv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107881contigM-pyrifera_M_contig107881:280..477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.2
Seed ortholog evalue2e-10
Seed eggNOG ortholog3218.PP1S10_34V6.1
Preferred nameMAN2A2
KEGG koko:K01231
KEGG ReactionR05984
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004572,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005996,GO:0006013,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006517,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009628,GO:0009651,GO:0009987,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016787,GO:0016798,GO:0019318,GO:0019538,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0034645,GO:0036211,GO:0042538,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0070085,GO:0071704,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.alpha-mannosidase
EggNOG OGs37N3I@33090,3GARU@35493,KOG1958@2759,KOG1959@1
EC3.2.1.114
COG Functional cat.G
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.1774218-CDS-M-pyrifera_M_contig107881:279..4771622815588.1774218-CDS-M-pyrifera_M_contig107881:279..477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107881 280..477 +
1692277476.5702815-CDS-M-pyrifera_M_contig107881:279..4771692277476.5702815-CDS-M-pyrifera_M_contig107881:279..477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107881 280..477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107881.1673.1prot_M-pyrifera_M_contig107881.1673.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107881 280..477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107881.1673.1

>prot_M-pyrifera_M_contig107881.1673.1 ID=prot_M-pyrifera_M_contig107881.1673.1|Name=mRNA_M-pyrifera_M_contig107881.1673.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
EGELEVFIIAHSHCDPGWLMSYESYYRTRVKNILDSVLVHLKHGDRKFNW
SESSFLQRWYTGGYP*
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mRNA from alignment at M-pyrifera_M_contig107881:280..477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107881.1673.1 ID=mRNA_M-pyrifera_M_contig107881.1673.1|Name=mRNA_M-pyrifera_M_contig107881.1673.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig107881:280..477+ (Macrocystis pyrifera P11B4 male)
GAGGGTGAACTGGAGGTGTTCATTATCGCCCACTCGCACTGTGACCCGGG ATGGCTGATGAGCTACGAGAGCTACTACCGCACTCGCGTCAAGAACATCC TTGACTCAGTCCTCGTCCACCTCAAGCACGGCGATAGGAAGTTCAATTGG TCCGAGTCTTCTTTCCTCCAGCGATGGTACACAGGTGGGTACCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107881:280..477+

>mRNA_M-pyrifera_M_contig107881.1673.1 ID=mRNA_M-pyrifera_M_contig107881.1673.1|Name=mRNA_M-pyrifera_M_contig107881.1673.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig107881:280..477+ (Macrocystis pyrifera P11B4 male)
GAGGGTGAACTGGAGGTGTTCATTATCGCCCACTCGCACTGTGACCCGGG
ATGGCTGATGAGCTACGAGAGCTACTACCGCACTCGCGTCAAGAACATCC
TTGACTCAGTCCTCGTCCACCTCAAGCACGGCGATAGGAAGTTCAATTGG
TCCGAGTCTTCTTTCCTCCAGCGATGGTACACAGGTGGGTACCCCTGAGA
GGGTGAACTGGAGGTGTTCATTATCGCCCACTCGCACTGTGACCCGGGAT
GGCTGATGAGCTACGAGAGCTACTACCGCACTCGCGTCAAGAACATCCTT
GACTCAGTCCTCGTCCACCTCAAGCACGGCGATAGGAAGTTCAATTGGTC
CGAGTCTTCTTTCCTCCAGCGATGGTACACAGGTGGGTACCCCTGA
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