mRNA_M-pyrifera_M_contig107878.1672.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107878.1672.1
Unique NamemRNA_M-pyrifera_M_contig107878.1672.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107878.1672.1 vs. uniprot
Match: H3G825_PHYRM (Epimerase domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=H3G825_PHYRM)

HSP 1 Score: 182 bits (461), Expect = 2.490e-54
Identity = 87/142 (61.27%), Postives = 110/142 (77.46%), Query Frame = 1
Query:    4 RVLVTGAAGQVGSELVPYLRTRLGEGSVIASDIRRPDGPRRGRYVHVDVLDADNIARVVLEEDIDTIVHLGAILSASGERNPDLALKVNARGSENVLEVARSQRLRVLIPSTIAAFGPSTPRDNTPDLTLMRPTTMYGVTKV 429
            RVLVTG  GQ+G ELVPY+R   G  +++ SDI+ P GPR  R+V+ DV D D++AR+V E+ +DTIVH+ ++LSA GE NP LAL VN RG +NVLE+A+  +LRV  PSTIA FGPSTP+D TPD T+MRPTTMYG+TKV
Sbjct:    1 RVLVTGGTGQIGMELVPYMRELFGSDAIVNSDIKAPSGPRDSRFVYCDVQDRDSMARIVAEQGVDTIVHMASLLSAVGEANPSLALAVNTRGIQNVLELAKQYQLRVFAPSTIAVFGPSTPQDETPDTTIMRPTTMYGLTKV 142          
BLAST of mRNA_M-pyrifera_M_contig107878.1672.1 vs. uniprot
Match: K3XBE3_GLOUD (Epimerase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBE3_GLOUD)

HSP 1 Score: 180 bits (457), Expect = 7.470e-53
Identity = 87/142 (61.27%), Postives = 109/142 (76.76%), Query Frame = 1
Query:    4 RVLVTGAAGQVGSELVPYLRTRLGEGSVIASDIRRPDGPRRGRYVHVDVLDADNIARVVLEEDIDTIVHLGAILSASGERNPDLALKVNARGSENVLEVARSQRLRVLIPSTIAAFGPSTPRDNTPDLTLMRPTTMYGVTKV 429
            R+L+TG  GQ+G ELVPYLR   GE S++ SDI+       G +V+ DV + D++AR+VLE  IDTIVH+ ++LSA GE+NP LALKVN RG ENVL++A   +LRV  PSTIA FGPSTP+D TPDLT+MRPTTMYG+TKV
Sbjct:   65 RILITGGTGQIGMELVPYLRNIFGENSIVNSDIKSSGKKETGPFVYCDVQNKDSLARIVLENGIDTIVHMASLLSALGEKNPSLALKVNTRGIENVLDIAAQNKLRVFSPSTIAVFGPSTPKDETPDLTIMRPTTMYGITKV 206          
BLAST of mRNA_M-pyrifera_M_contig107878.1672.1 vs. uniprot
Match: A0A3R7HD76_9STRA (Epimerase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HD76_9STRA)

HSP 1 Score: 179 bits (454), Expect = 7.550e-53
Identity = 86/142 (60.56%), Postives = 109/142 (76.76%), Query Frame = 1
Query:    4 RVLVTGAAGQVGSELVPYLRTRLGEGSVIASDIRRPDGPRRGRYVHVDVLDADNIARVVLEEDIDTIVHLGAILSASGERNPDLALKVNARGSENVLEVARSQRLRVLIPSTIAAFGPSTPRDNTPDLTLMRPTTMYGVTKV 429
            R+LVTG  GQ+G ELVPY+R  +G  +++ SDI+ P G R G +V+ DV D D +AR+V E D+DTIVH+ ++LSA GE NP LAL VN RG +NVLE+A+  +LRV  PSTIA FGPSTP D+TPD T+MRPTTMYG+TKV
Sbjct:   20 RILVTGGTGQIGMELVPYMRQLMGNDAIVNSDIKAPAGARDGPFVYCDVQDRDQLARIVTEHDVDTIVHMASLLSAVGETNPTLALSVNTRGIQNVLELAKQYQLRVFAPSTIAVFGPSTPPDDTPDTTIMRPTTMYGLTKV 161          
BLAST of mRNA_M-pyrifera_M_contig107878.1672.1 vs. uniprot
Match: A0A024UM15_9STRA (Epimerase domain-containing protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024UM15_9STRA)

HSP 1 Score: 177 bits (449), Expect = 6.210e-52
Identity = 90/145 (62.07%), Postives = 111/145 (76.55%), Query Frame = 1
Query:    1 KRVLVTGAAGQVGSELVPYLRTRLGEGSVIASDIRRPDGPRR--GRYVHVDVLDADNIARVVLEEDIDTIVHLGAILSASGERNPDLALKVNARGSENVLEVARSQRLRVLIPSTIAAFGPSTPRDNTPDLTLMRPTTMYGVTKV 429
            +R+LVTG  GQ+G ELVPYLR   G  +VI SDI+      +  G +V+ DVL+AD +AR+VLE  IDTI+H  ++LSA GE+NP LALKVN RG ENVLE+AR   LRV  PSTIA +GPSTP+DNTPD+T+MRPTTMYG+TKV
Sbjct:   39 RRILVTGGTGQIGMELVPYLRNLHGRDAVINSDIKMASKAEQKSGPFVYCDVLNADGLARIVLENGIDTIIHNASLLSAIGEKNPQLALKVNTRGLENVLELARLNNLRVFAPSTIAVYGPSTPQDNTPDITIMRPTTMYGITKV 183          
BLAST of mRNA_M-pyrifera_M_contig107878.1672.1 vs. uniprot
Match: A0A067CC85_SAPPC (Epimerase domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CC85_SAPPC)

HSP 1 Score: 176 bits (446), Expect = 1.580e-51
Identity = 90/145 (62.07%), Postives = 112/145 (77.24%), Query Frame = 1
Query:    1 KRVLVTGAAGQVGSELVPYLRTRLGEGSVIASDIRRPDG--PRRGRYVHVDVLDADNIARVVLEEDIDTIVHLGAILSASGERNPDLALKVNARGSENVLEVARSQRLRVLIPSTIAAFGPSTPRDNTPDLTLMRPTTMYGVTKV 429
            +R+LVTG  GQ+G ELVP+LR   G+ +VI SDI+ P     + G +V+ DVL+ D++AR+VLE  IDTI+H  ++LSA GE+NP LALKVN RG ENVLE+AR   LRV  PSTIA FGPSTP+D TPDLT+MRPTTMYG+TKV
Sbjct:   35 RRILVTGGTGQIGMELVPFLRNIHGKDAVINSDIKMPGKGEQKSGTFVYCDVLNYDSLARIVLENGIDTIIHNASLLSAIGEKNPQLALKVNTRGLENVLELARLNNLRVFAPSTIAVFGPSTPKDMTPDLTIMRPTTMYGITKV 179          
BLAST of mRNA_M-pyrifera_M_contig107878.1672.1 vs. uniprot
Match: G5AD89_PHYSP (Epimerase domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=G5AD89_PHYSP)

HSP 1 Score: 174 bits (442), Expect = 4.650e-51
Identity = 87/145 (60.00%), Postives = 110/145 (75.86%), Query Frame = 1
Query:    1 KRVLVTGAAGQVGSELVPYLRTRLGEGSVIASDIRRPDGP--RRGRYVHVDVLDADNIARVVLEEDIDTIVHLGAILSASGERNPDLALKVNARGSENVLEVARSQRLRVLIPSTIAAFGPSTPRDNTPDLTLMRPTTMYGVTKV 429
            +R+LVTG  GQ+G ELVPY+R   G  SV+ SDI+ P G   R G +V+ DV D D++AR+V+E  +DTIVH+ ++LSA GE NP LAL VN RG +NVLE+A+  +LRV  PSTIA FGPSTP+D TPD T+MRPTTMYG+TKV
Sbjct:   18 RRILVTGGTGQIGMELVPYMRQLFGADSVVNSDIKAPAGASARDGAFVYCDVQDRDSMARIVVEHGVDTIVHMASLLSAVGEANPSLALAVNTRGVQNVLELAKQYQLRVFAPSTIAVFGPSTPQDETPDTTIMRPTTMYGLTKV 162          
BLAST of mRNA_M-pyrifera_M_contig107878.1672.1 vs. uniprot
Match: A0A0P1AAJ5_PLAHL (L-threonine 3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAJ5_PLAHL)

HSP 1 Score: 174 bits (442), Expect = 5.280e-51
Identity = 83/142 (58.45%), Postives = 109/142 (76.76%), Query Frame = 1
Query:    4 RVLVTGAAGQVGSELVPYLRTRLGEGSVIASDIRRPDGPRRGRYVHVDVLDADNIARVVLEEDIDTIVHLGAILSASGERNPDLALKVNARGSENVLEVARSQRLRVLIPSTIAAFGPSTPRDNTPDLTLMRPTTMYGVTKV 429
            R+LVTG  GQ+G ELVPY+R   G   ++ SDI+ P GPR   +V+ DV D +++AR+V+E+ +DTIVH+ ++LSA GE NP LAL VN +G +NVLE+A+  +LRV  PSTIA FGPSTP+D TPD T+MRPTTMYG+TKV
Sbjct:   26 RILVTGGTGQIGMELVPYMRQFFGADVIVNSDIKAPTGPRDNYFVYCDVQDRNSMARIVVEQGVDTIVHMASLLSALGEANPSLALSVNTQGIQNVLELAKQYQLRVFAPSTIAVFGPSTPKDETPDTTIMRPTTMYGLTKV 167          
BLAST of mRNA_M-pyrifera_M_contig107878.1672.1 vs. uniprot
Match: A0A3M6VHP2_9STRA (Epimerase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHP2_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.490e-50
Identity = 85/142 (59.86%), Postives = 107/142 (75.35%), Query Frame = 1
Query:    4 RVLVTGAAGQVGSELVPYLRTRLGEGSVIASDIRRPDGPRRGRYVHVDVLDADNIARVVLEEDIDTIVHLGAILSASGERNPDLALKVNARGSENVLEVARSQRLRVLIPSTIAAFGPSTPRDNTPDLTLMRPTTMYGVTKV 429
            R+LVTG  GQ+G ELVPY+R   G+  V+ SDI+ P GPR   +V+ +V D D++AR+V E  I  IVH+ ++LSA GE NP LAL VN RG +NVLE+A+  +LRVL PSTIA FGPSTP+D TPD T+MRPTTMYG+TKV
Sbjct:   26 RILVTGGTGQIGMELVPYMRQLFGKNVVVNSDIKAPSGPRDSNFVYCNVEDRDSMARIVTEHGISMIVHMASLLSAVGEANPALALSVNTRGIQNVLELAKQYQLRVLAPSTIAVFGPSTPQDETPDTTIMRPTTMYGLTKV 167          
BLAST of mRNA_M-pyrifera_M_contig107878.1672.1 vs. uniprot
Match: A0A662WRL0_9STRA (Epimerase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRL0_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.680e-50
Identity = 83/143 (58.04%), Postives = 111/143 (77.62%), Query Frame = 1
Query:    4 RVLVTGAAGQVGSELVPYLRTRLGEGSVIASDIRRPDGPRR-GRYVHVDVLDADNIARVVLEEDIDTIVHLGAILSASGERNPDLALKVNARGSENVLEVARSQRLRVLIPSTIAAFGPSTPRDNTPDLTLMRPTTMYGVTKV 429
            R+LVTG  GQ+G E VPYLR  +GE +++ SDI+ P G +  G +V+ DV D D++AR+V E  +DTI+H+ ++LSA GE NP LAL VN RG +NVLE+A+  +LRV  PSTIA FGP+TP+D+TPD+T+MRPTTMYG+TKV
Sbjct:   28 RILVTGGTGQIGMEFVPYLRQLMGENAIVNSDIKAPAGVQASGPFVYCDVQDRDSLARIVTENGVDTIIHMASLLSAVGEANPTLALSVNTRGIQNVLEIAKQNQLRVFAPSTIAVFGPTTPQDDTPDVTVMRPTTMYGLTKV 170          
BLAST of mRNA_M-pyrifera_M_contig107878.1672.1 vs. uniprot
Match: A0A8K1C1Z7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C1Z7_PYTOL)

HSP 1 Score: 173 bits (438), Expect = 3.870e-50
Identity = 85/143 (59.44%), Postives = 110/143 (76.92%), Query Frame = 1
Query:    4 RVLVTGAAGQVGSELVPYLRTRLGEGSVIASDIRRPDGPR-RGRYVHVDVLDADNIARVVLEEDIDTIVHLGAILSASGERNPDLALKVNARGSENVLEVARSQRLRVLIPSTIAAFGPSTPRDNTPDLTLMRPTTMYGVTKV 429
            RVLVTG  GQ+G ELVPYLR   G+ +++ SDI+   G + +G + + DV D D++AR+VLE  +DTI+HL ++LSA GE+NP LALKVN+RG ENVLE+A    LRV  PSTIA FGP+TP+D TPD T+MRPTT+YG+TKV
Sbjct:   51 RVLVTGGTGQIGMELVPYLREIFGDHAIVNSDIKAISGRKEKGTFAYCDVQDRDSLARIVLENGVDTIIHLASLLSALGEKNPQLALKVNSRGIENVLEIAHQNNLRVFSPSTIAVFGPTTPKDMTPDETIMRPTTIYGITKV 193          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107878.1672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3G825_PHYRM2.490e-5461.27Epimerase domain-containing protein n=5 Tax=Phytop... [more]
K3XBE3_GLOUD7.470e-5361.27Epimerase domain-containing protein n=1 Tax=Globis... [more]
A0A3R7HD76_9STRA7.550e-5360.56Epimerase domain-containing protein n=3 Tax=Phytop... [more]
A0A024UM15_9STRA6.210e-5262.07Epimerase domain-containing protein n=6 Tax=Aphano... [more]
A0A067CC85_SAPPC1.580e-5162.07Epimerase domain-containing protein n=4 Tax=Saprol... [more]
G5AD89_PHYSP4.650e-5160.00Epimerase domain-containing protein n=16 Tax=Phyto... [more]
A0A0P1AAJ5_PLAHL5.280e-5158.45L-threonine 3 n=1 Tax=Plasmopara halstedii TaxID=4... [more]
A0A3M6VHP2_9STRA1.490e-5059.86Epimerase domain-containing protein n=1 Tax=Perono... [more]
A0A662WRL0_9STRA1.680e-5058.04Epimerase domain-containing protein n=2 Tax=Nothop... [more]
A0A8K1C1Z7_PYTOL3.870e-5059.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107878contigM-pyrifera_M_contig107878:35..481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1.6e-44
Seed eggNOG ortholog164328.Phyra54694
Preferred nameTDH
KEGG rclassRC00525
KEGG koko:K15789
KEGG ReactionR01465
KEGG Pathwayko00260,map00260
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006566,GO:0006567,GO:0006807,GO:0008150,GO:0008152,GO:0008743,GO:0009056,GO:0009063,GO:0009066,GO:0009068,GO:0009987,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
EggNOG free text desc.Polysaccharide biosynthesis protein
EggNOG OGs3Q7QE@4776,COG0451@1,KOG2774@2759
EC1.1.1.103
COG Functional cat.GM
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.1441104-CDS-M-pyrifera_M_contig107878:34..4811622815588.1441104-CDS-M-pyrifera_M_contig107878:34..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107878 35..481 -
1692277476.558392-CDS-M-pyrifera_M_contig107878:34..4811692277476.558392-CDS-M-pyrifera_M_contig107878:34..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107878 35..481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107878.1672.1prot_M-pyrifera_M_contig107878.1672.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107878 35..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107878.1672.1

>prot_M-pyrifera_M_contig107878.1672.1 ID=prot_M-pyrifera_M_contig107878.1672.1|Name=mRNA_M-pyrifera_M_contig107878.1672.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
KRVLVTGAAGQVGSELVPYLRTRLGEGSVIASDIRRPDGPRRGRYVHVDV
LDADNIARVVLEEDIDTIVHLGAILSASGERNPDLALKVNARGSENVLEV
ARSQRLRVLIPSTIAAFGPSTPRDNTPDLTLMRPTTMYGVTKVSCAVC*
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mRNA from alignment at M-pyrifera_M_contig107878:35..481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107878.1672.1 ID=mRNA_M-pyrifera_M_contig107878.1672.1|Name=mRNA_M-pyrifera_M_contig107878.1672.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig107878:35..481- (Macrocystis pyrifera P11B4 male)
AAGCGAGTGTTGGTGACTGGAGCTGCTGGCCAGGTGGGGAGTGAGCTTGT TCCGTACCTCCGCACCCGGCTCGGAGAGGGGTCTGTGATTGCATCGGACA TTCGCCGTCCGGACGGGCCGCGTCGGGGCCGGTACGTGCACGTGGACGTG CTGGATGCGGACAACATCGCTCGCGTGGTGCTGGAGGAGGATATCGACAC GATTGTGCACCTGGGCGCTATCCTGTCTGCTTCTGGCGAGCGCAACCCGG ACCTGGCACTCAAGGTCAACGCTCGTGGCTCTGAAAATGTGCTGGAAGTG GCGCGTTCGCAGCGGCTGCGGGTGCTCATCCCGTCCACCATCGCCGCGTT CGGCCCGTCCACTCCGCGCGACAACACGCCGGACCTGACCCTCATGCGGC CCACGACCATGTACGGCGTCACCAAGGTGAGCTGCGCTGTGTGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107878:35..481-

>mRNA_M-pyrifera_M_contig107878.1672.1 ID=mRNA_M-pyrifera_M_contig107878.1672.1|Name=mRNA_M-pyrifera_M_contig107878.1672.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig107878:35..481- (Macrocystis pyrifera P11B4 male)
AAGCGAGTGTTGGTGACTGGAGCTGCTGGCCAGGTGGGGAGTGAGCTTGT
TCCGTACCTCCGCACCCGGCTCGGAGAGGGGTCTGTGATTGCATCGGACA
TTCGCCGTCCGGACGGGCCGCGTCGGGGCCGGTACGTGCACGTGGACGTG
CTGGATGCGGACAACATCGCTCGCGTGGTGCTGGAGGAGGATATCGACAC
GATTGTGCACCTGGGCGCTATCCTGTCTGCTTCTGGCGAGCGCAACCCGG
ACCTGGCACTCAAGGTCAACGCTCGTGGCTCTGAAAATGTGCTGGAAGTG
GCGCGTTCGCAGCGGCTGCGGGTGCTCATCCCGTCCACCATCGCCGCGTT
CGGCCCGTCCACTCCGCGCGACAACACGCCGGACCTGACCCTCATGCGGC
CCACGACCATGTACGGCGTCACCAAGGTGAGCTGCGCTGTGTGCTGAAAG
CGAGTGTTGGTGACTGGAGCTGCTGGCCAGGTGGGGAGTGAGCTTGTTCC
GTACCTCCGCACCCGGCTCGGAGAGGGGTCTGTGATTGCATCGGACATTC
GCCGTCCGGACGGGCCGCGTCGGGGCCGGTACGTGCACGTGGACGTGCTG
GATGCGGACAACATCGCTCGCGTGGTGCTGGAGGAGGATATCGACACGAT
TGTGCACCTGGGCGCTATCCTGTCTGCTTCTGGCGAGCGCAACCCGGACC
TGGCACTCAAGGTCAACGCTCGTGGCTCTGAAAATGTGCTGGAAGTGGCG
CGTTCGCAGCGGCTGCGGGTGCTCATCCCGTCCACCATCGCCGCGTTCGG
CCCGTCCACTCCGCGCGACAACACGCCGGACCTGACCCTCATGCGGCCCA
CGACCATGTACGGCGTCACCAAGGTGAGCTGCGCTGTGTGCTGA
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