mRNA_M-pyrifera_M_contig107873.1670.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107873.1670.1
Unique NamemRNA_M-pyrifera_M_contig107873.1670.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107873.1670.1 vs. uniprot
Match: A0A8J9S4B7_9CHLO (Acyl-CoA-binding domain-containing protein 4 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S4B7_9CHLO)

HSP 1 Score: 87.4 bits (215), Expect = 7.290e-17
Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 1
Query:   13 GASPSCRWGHSATVLGPFLVVVGGRVGSKPQPLNEAFVLHVPSCTWQRFPTSGTAPKNRYGHSSCLLPSRTAVVLCLGGHGGRSRYYADLHSLNLETWTWRQVETTGEPPCKRCGHSTTLVNDTAIVLGG 402
            G  P+CR GHSAT++G  + + GG   S+ +P+ E  VL + S  W R  TSG  P  R  H++    +R  VV    G G  +  Y D+  L+ +T  W   +T G PP  R GH+  L+ D   ++GG
Sbjct:  275 GTPPTCRGGHSATLVGSNVYIFGGEDSSR-RPMGELLVLDLVSMAWVRPDTSGLPPAARSAHTALAYKNRFLVVF---GGGSVANCYNDVTLLDTKTNEWSCPQTEGTPPTPRAGHAAALLGDRLYIVGG 400          
BLAST of mRNA_M-pyrifera_M_contig107873.1670.1 vs. uniprot
Match: A0A7S1Z436_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z436_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-15
Identity = 52/159 (32.70%), Postives = 79/159 (49.69%), Query Frame = 1
Query:    4 TQKGASPSCRWGHSATVL----------------GPFLVVVGGRVGSKPQPLNEAFVLHVPS----CTWQRFPTSGTAPKNRYGHSSCLLPSRTAVVLCLGGHGGRSRYYADLHSLNLETWTWRQVETTGEPPCKRCGHSTTLVNDTA--IVLGGYDGR 414
            T  G  P  R GH+AT+                 G  + V+GG +GS P   ++  VL +        W + P  GT P     HS+  +PSR  V +  GG+G    Y  DLH+L++ T+TWR VETTG  P +R  HS+ ++++     + GG++G+
Sbjct:  113 TVGGTPPPGRNGHTATLATSNRDGTNPNPNDEDDGARIFVIGGWLGSGPLAASDMHVLDISGGLEGLRWYQPPVRGTPPGPCNMHSADFVPSRNEVYVFRGGNG--REYLNDLHALDVNTYTWRNVETTGASPQQRANHSSAVLDELEELFIFGGWNGK 269          
BLAST of mRNA_M-pyrifera_M_contig107873.1670.1 vs. uniprot
Match: A0A7S2HWT1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HWT1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.400e-14
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   67 LVVVGGRVGSKPQPLNEAFVLH----VPSCTWQRFPTSGTAPKNRYGHSSCLLPSRTAVVLCLGGHGGRSRYYADLHSLNLETWTWRQVETTGEPPCKRCGHSTTLVNDTA--IVLGGYDGR 414
            + V+GG +GS P   ++  VL     V    W + P  GT P     HS+  +P+R  V +  GG+G    Y  DLH+L++ T+TWR VETTG  P +R  HS+ ++ +     + GG++G+
Sbjct:  152 IFVIGGWLGSGPLAASDMHVLDISGGVEGLRWYQPPVRGTPPGPCNMHSADFVPTRNEVYVFRGGNG--REYLNDLHALDVNTYTWRAVETTGAAPQQRANHSSAVLEELEELFIFGGWNGK 271          
BLAST of mRNA_M-pyrifera_M_contig107873.1670.1 vs. uniprot
Match: F0Y0Z0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0Z0_AURAN)

HSP 1 Score: 79.0 bits (193), Expect = 7.490e-14
Identity = 50/151 (33.11%), Postives = 74/151 (49.01%), Query Frame = 1
Query:   13 GASPSCRWGHSATVLGP-FLVVVGGRVGSK-PQPLNEAFVLHVPSCTWQRFPTSGTAPKN----------------RYGHSSCLLPSRTAVVLCLGGHGGRSRYYADLHSLNLETWTWRQVETTGEPPCKRCGHSTTLVNDTAI-VLGGYD 408
            GA+P+ RW H+A +     ++V GG    K  +  N+ ++    S  W + P + T P                  R  H+S L+ S   +    GG G   R +ADLHSL++ET  W +VETTGEPP  R GH    + D  + V+GG++
Sbjct:   64 GAAPAPRWHHTAHMYNDRTMLVFGGFSADKVSRYFNDLWLYDTKSEKWSQPPPAETVPDQSGLPSLKRPWAGVPQPRGAHASTLVGSALMIFGGYGGSGFSRRDFADLHSLDMETMEWEEVETTGEPPEARSGHQLLSIEDRQLYVMGGWN 214          
BLAST of mRNA_M-pyrifera_M_contig107873.1670.1 vs. uniprot
Match: A0A0V0YHT4_TRIPS (Kelch domain-containing protein 3 (Fragment) n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0YHT4_TRIPS)

HSP 1 Score: 74.7 bits (182), Expect = 1.300e-12
Identity = 43/132 (32.58%), Postives = 65/132 (49.24%), Query Frame = 1
Query:   40 HSATVLGPFLVVVGGRVGSKPQPLNEAFVLHVPSCTWQRFPTSGTAPKNRYGHSSCLLPSRTAVVLCLGG--------HGGRSRYYADLHSLNLETWTWRQVETTGEPPCKRCGHSTTLVNDTAIVLGGYDG 411
            H+  V G  +++ GG V    Q  N+ F+L + +  W++   +GT P  R  H++ ++  R  V    GG        H    RY  DL  L+L T+TW +V+TTGE P  R  HS    +    + GGY+G
Sbjct:  183 HTCCVYGSMMIIFGGFVEYTQQFSNDVFILDLDTFIWRKPNVTGTPPIWRDFHTATVIGDRMYVF---GGRSDEAAPYHSNVERYPTDLFYLDLSTFTWHEVQTTGERPTGRRSHSAWEHSGCLYIFGGYNG 311          
BLAST of mRNA_M-pyrifera_M_contig107873.1670.1 vs. uniprot
Match: A0A8J4G1R6_9CHLO (ACB domain-containing protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4G1R6_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 1.380e-12
Identity = 42/134 (31.34%), Postives = 69/134 (51.49%), Query Frame = 1
Query:    1 PTQKGASPSCRWGHSATVLGPFLVVVGGRVGSKPQPLNEAFVLHVPSCTWQRFPTSGTAPKNRYGHSSCLLPSRTAVVLCLGGHGGRSRYYADLHSLNLETWTWRQVETTGEPPCKRCGHSTTLVNDTAIVLGG 402
            P   G +P+ R GH+AT+LG  L ++GG   ++ + L++  VL + + TW     SG AP  R   +SC    +   ++  GG G  +  ++DL  L+ +  TW Q+   G     R GHS  ++ D   ++GG
Sbjct:  252 PEASGQAPTSRGGHTATLLGNKLWIIGGEDSAR-RALSDVHVLDLETMTWSTPQISGKAPLGR--SASCATSLQDRYIILFGG-GSVATCFSDLQMLDTQELTWSQLAQAGAKVTPRAGHSGAVLGDIWYIVGG 381          
BLAST of mRNA_M-pyrifera_M_contig107873.1670.1 vs. uniprot
Match: A0A7S0N5L7_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N5L7_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 1.390e-12
Identity = 48/141 (34.04%), Postives = 70/141 (49.65%), Query Frame = 1
Query:    4 TQKGASPSCRWGHSATVLGPFLVVVGGRVGSKPQPLNEAFVLHVPSCTWQRFPTSGTAPKNRY-----GHSSCLLPSRTAVVLCLGGHGGRSRYYA---DLHSLNLETWTWRQVETTGEPPCKRCGHSTTLVNDTAIVLGG 402
            T  G  P  R+ H+  ++G  L+VVGG   S  +  ++  VL + + TW R  TSG +  +       GH      S+   VL +GGH  RS   +   ++  LN + +TW  +ET GE P  R GHS  +  DT +V GG
Sbjct:  154 TLSGKRPRPRYQHATVIVGNSLLVVGGN--SWGRYFSDTQVLDLDTFTWSRAETSGASTSSSALPPCAGHKLVTWASK---VLLVGGHAKRSDLPSAKLEVRVLNADNFTWTVMETNGEAPSARGGHSAAVFGDTLVVFGG 289          
BLAST of mRNA_M-pyrifera_M_contig107873.1670.1 vs. uniprot
Match: D8TZR5_VOLCA (ACB domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TZR5_VOLCA)

HSP 1 Score: 74.3 bits (181), Expect = 2.530e-12
Identity = 42/134 (31.34%), Postives = 68/134 (50.75%), Query Frame = 1
Query:    1 PTQKGASPSCRWGHSATVLGPFLVVVGGRVGSKPQPLNEAFVLHVPSCTWQRFPTSGTAPKNRYGHSSCLLPSRTAVVLCLGGHGGRSRYYADLHSLNLETWTWRQVETTGEPPCKRCGHSTTLVNDTAIVLGG 402
            P   G +PS R GH+AT+LG  L V+GG   ++ + L++  VL + + +W     SG AP  R   +SC    +   ++  GG G  +  ++DLH L+    TW Q+   G     R GH+  ++     ++GG
Sbjct:  254 PVTSGQAPSARGGHTATLLGNKLWVIGGEDSAR-RALSDVHVLDLDTLSWSTPEISGKAPLGR--SASCATAHQDRYIVIFGG-GSVATCFSDLHMLDTHELTWTQLAQAGAKVTPRAGHAGAVLGGIWYIVGG 383          
BLAST of mRNA_M-pyrifera_M_contig107873.1670.1 vs. uniprot
Match: D8SE67_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SE67_SELML)

HSP 1 Score: 70.9 bits (172), Expect = 4.850e-12
Identity = 43/123 (34.96%), Postives = 61/123 (49.59%), Query Frame = 1
Query:   55 LGPFLVVVGGRVGSKPQPLNEAFVLHVPSCTWQRFPTSGTAPKNRYGHSSCLLPSRTAVVLCLGGHGGRS-----RYYADLHSLNLETWTWRQVETTGEPPCKRCGHSTTLVNDTAIVLGGYD 408
            +G  L V GG  G+    L++ FVL   + TW +    G  P  R GHS+ L+     V    GG G  S      YY DLH LN+ T+ W+++ TTG  P  R  H+ +   +  +V+GG D
Sbjct:    3 VGSKLYVFGGTNGTST--LDDLFVLDNATNTWGKPDVFGDVPAPREGHSASLIGDNLFVF---GGCGKSSDPSEEEYYNDLHVLNMNTFVWKKISTTGVSPIPRDSHTCSSYKNCFVVMGGED 120          
BLAST of mRNA_M-pyrifera_M_contig107873.1670.1 vs. uniprot
Match: A0A0V1MVF4_9BILA (Kelch domain-containing protein 3 (Fragment) n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1MVF4_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 5.700e-12
Identity = 42/132 (31.82%), Postives = 64/132 (48.48%), Query Frame = 1
Query:   40 HSATVLGPFLVVVGGRVGSKPQPLNEAFVLHVPSCTWQRFPTSGTAPKNRYGHSSCLLPSRTAVVLCLGG--------HGGRSRYYADLHSLNLETWTWRQVETTGEPPCKRCGHSTTLVNDTAIVLGGYDG 411
            H+  V G  +++ GG V    Q  N+ F+L + +  W++   +GT P  R  H++ ++  R  V    GG        H    RY  DL  L+L T+ W +V+TTGE P  R  HS    +    + GGY+G
Sbjct:  185 HTCCVYGNMMIIFGGFVEYTQQFSNDVFILDLDTFIWRKPNVTGTPPVWRDFHTATVIGDRMYVF---GGRSDEAAPYHSNVERYPTDLFYLDLSTFKWHEVQTTGERPTGRRSHSAWEYSGCLYIFGGYNG 313          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107873.1670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9S4B7_9CHLO7.290e-1736.15Acyl-CoA-binding domain-containing protein 4 n=1 T... [more]
A0A7S1Z436_9STRA1.170e-1532.70Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S2HWT1_9STRA6.400e-1435.25Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
F0Y0Z0_AURAN7.490e-1433.11Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A0V0YHT4_TRIPS1.300e-1232.58Kelch domain-containing protein 3 (Fragment) n=1 T... [more]
A0A8J4G1R6_9CHLO1.380e-1231.34ACB domain-containing protein n=2 Tax=Volvox TaxID... [more]
A0A7S0N5L7_9CHLO1.390e-1234.04Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
D8TZR5_VOLCA2.530e-1231.34ACB domain-containing protein n=1 Tax=Volvox carte... [more]
D8SE67_SELML4.850e-1234.96Uncharacterized protein n=1 Tax=Selaginella moelle... [more]
A0A0V1MVF4_9BILA5.700e-1231.82Kelch domain-containing protein 3 (Fragment) n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107873contigM-pyrifera_M_contig107873:31..612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score93.2
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog29176.XP_003880639.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Kelch motif
EggNOG OGs3YDQH@5794,3YQBN@5796,3YWH2@5809,KOG0379@1,KOG0379@2759
COG Functional cat.S
Best tax levelSarcocystidae
Best eggNOG OGNA|NA|NA
Exons2
Model size525
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.0513442-CDS-M-pyrifera_M_contig107873:30..3241622815588.0513442-CDS-M-pyrifera_M_contig107873:30..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107873 31..324 -
1692277476.531029-CDS-M-pyrifera_M_contig107873:30..3241692277476.531029-CDS-M-pyrifera_M_contig107873:30..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107873 31..324 -
1622815588.0667837-CDS-M-pyrifera_M_contig107873:381..6121622815588.0667837-CDS-M-pyrifera_M_contig107873:381..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107873 382..612 -
1692277476.5405312-CDS-M-pyrifera_M_contig107873:381..6121692277476.5405312-CDS-M-pyrifera_M_contig107873:381..612Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107873 382..612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107873.1670.1prot_M-pyrifera_M_contig107873.1670.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107873 31..612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107873.1670.1

>prot_M-pyrifera_M_contig107873.1670.1 ID=prot_M-pyrifera_M_contig107873.1670.1|Name=mRNA_M-pyrifera_M_contig107873.1670.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
PTQKGASPSCRWGHSATVLGPFLVVVGGRVGSKPQPLNEAFVLHVPSCTW
QRFPTSGTAPKNRYGHSSCLLPSRTAVVLCLGGHGGRSRYYADLHSLNLE
TWTWRQVETTGEPPCKRCGHSTTLVNDTAIVLGGYDGRHYFSDFHCLNVT
VWAWSRPRAVAAAPTPLHGHSASAV
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mRNA from alignment at M-pyrifera_M_contig107873:31..612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107873.1670.1 ID=mRNA_M-pyrifera_M_contig107873.1670.1|Name=mRNA_M-pyrifera_M_contig107873.1670.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig107873:31..612- (Macrocystis pyrifera P11B4 male)
CCGACACAGAAAGGCGCAAGTCCTTCGTGCAGGTGGGGCCACTCGGCCAC CGTGCTCGGGCCGTTCTTGGTCGTGGTAGGCGGCCGCGTCGGCTCCAAGC CGCAGCCGCTGAACGAGGCGTTTGTGCTGCACGTCCCCAGCTGCACCTGG CAGCGCTTCCCCACCTCGGGGACTGCGCCCAAGAATCGATACGGCCACTC CTCCTGCCTCCTGCCGTCCCGAACCGCGGTTGTGACGTCTCCAGCCTCCG CCGCGCCGCCAGCCTCGTCGTTTCGTCTCTCCGGCCAGGTCCTGTGCCTC GGCGGCCACGGCGGCCGGTCGCGGTACTATGCAGACCTGCACTCGCTGAA CCTGGAGACGTGGACGTGGCGCCAGGTGGAGACGACCGGCGAGCCGCCGT GCAAGCGCTGCGGCCACTCGACCACGCTGGTGAACGACACCGCGATCGTG CTGGGCGGCTACGACGGCCGCCACTACTTCTCCGACTTCCACTGCCTGAA CGTCACCGTCTGGGCCTGGTCCCGCCCCAGGGCGGTGGCCGCCGCGCCCA CCCCGCTCCACGGCCACTCCGCCAGCGCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107873:31..612-

>mRNA_M-pyrifera_M_contig107873.1670.1 ID=mRNA_M-pyrifera_M_contig107873.1670.1|Name=mRNA_M-pyrifera_M_contig107873.1670.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig107873:31..612- (Macrocystis pyrifera P11B4 male)
CCGACACAGAAAGGCGCAAGTCCTTCGTGCAGGTGGGGCCACTCGGCCAC
CGTGCTCGGGCCGTTCTTGGTCGTGGTAGGCGGCCGCGTCGGCTCCAAGC
CGCAGCCGCTGAACGAGGCGTTTGTGCTGCACGTCCCCAGCTGCACCTGG
CAGCGCTTCCCCACCTCGGGGACTGCGCCCAAGAATCGATACGGCCACTC
CTCCTGCCTCCTGCCGTCCCGAACCGCGGTTCCGACACAGAAAGGCGCAA
GTCCTTCGTGCAGGTGGGGCCACTCGGCCACCGTGCTCGGGCCGTTCTTG
GTCGTGGTAGGCGGCCGCGTCGGCTCCAAGCCGCAGCCGCTGAACGAGGC
GTTTGTGCTGCACGTCCCCAGCTGCACCTGGCAGCGCTTCCCCACCTCGG
GGACTGCGCCCAAGAATCGATACGGCCACTCCTCCTGCCTCCTGCCGTCC
CGAACCGCGGTTGTCCTGTGCCTCGGCGGCCACGGCGGCCGGTCGCGGTA
CTATGCAGACCTGCACTCGCTGAACCTGGAGACGTGGACGTGGCGCCAGG
TGGAGACGACCGGCGAGCCGCCGTGCAAGCGCTGCGGCCACTCGACCACG
CTGGTGAACGACACCGCGATCGTGCTGGGCGGCTACGACGGCCGCCACTA
CTTCTCCGACTTCCACTGCCTGAACGTCACCGTCTGGGCCTGGTCCCGCC
CCAGGGCGGTGGCCGCCGCGCCCACCCCGCTCCACGGCCACTCCGCCAGC
GCCGTCGTCCTGTGCCTCGGCGGCCACGGCGGCCGGTCGCGGTACTATGC
AGACCTGCACTCGCTGAACCTGGAGACGTGGACGTGGCGCCAGGTGGAGA
CGACCGGCGAGCCGCCGTGCAAGCGCTGCGGCCACTCGACCACGCTGGTG
AACGACACCGCGATCGTGCTGGGCGGCTACGACGGCCGCCACTACTTCTC
CGACTTCCACTGCCTGAACGTCACCGTCTGGGCCTGGTCCCGCCCCAGGG
CGGTGGCCGCCGCGCCCACCCCGCTCCACGGCCACTCCGCCAGCGCCGTC
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