mRNA_M-pyrifera_M_contig107861.1666.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107861.1666.1
Unique NamemRNA_M-pyrifera_M_contig107861.1666.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107861.1666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107861contigM-pyrifera_M_contig107861:154..420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.5
Seed ortholog evalue4.7e-07
Seed eggNOG ortholog208960.XP_007261662.1
Preferred nameVPS5
KEGG koko:K17917
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000407,GO:0003006,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005737,GO:0005768,GO:0005829,GO:0006810,GO:0006886,GO:0006897,GO:0006914,GO:0006996,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009653,GO:0009987,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0019898,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030435,GO:0030437,GO:0030904,GO:0030905,GO:0031321,GO:0031410,GO:0031982,GO:0032120,GO:0032258,GO:0032266,GO:0032502,GO:0032505,GO:0032507,GO:0032989,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034293,GO:0034613,GO:0035091,GO:0042147,GO:0042763,GO:0042764,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043934,GO:0043935,GO:0044085,GO:0044091,GO:0044237,GO:0044248,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044703,GO:0045053,GO:0045184,GO:0045185,GO:0046907,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051235,GO:0051321,GO:0051641,GO:0051649,GO:0051651,GO:0051704,GO:0061024,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071709,GO:0071840,GO:0072665,GO:0097708,GO:0098657,GO:0098796,GO:1901981,GO:1903046
EggNOG free text desc.Vps5 C terminal like
EggNOG OGs227QJ@155619,38B4R@33154,3H224@355688,3NUKF@4751,3UZPH@5204,COG5391@1,KOG2273@2759
COG Functional cat.U
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.8516986-CDS-M-pyrifera_M_contig107861:153..4201622815587.8516986-CDS-M-pyrifera_M_contig107861:153..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107861 154..420 -
1692277476.469201-CDS-M-pyrifera_M_contig107861:153..4201692277476.469201-CDS-M-pyrifera_M_contig107861:153..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107861 154..420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107861.1666.1prot_M-pyrifera_M_contig107861.1666.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107861 154..420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107861.1666.1

>prot_M-pyrifera_M_contig107861.1666.1 ID=prot_M-pyrifera_M_contig107861.1666.1|Name=mRNA_M-pyrifera_M_contig107861.1666.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
LTRARAPRKRQSAPGLINVQVVEYRLVSGPLRQHAEFKVETESTLSSFRA
RSASVFRRYSEFTWLVHTLSCRHVGVVIPPLPPAGYRE*
back to top

mRNA from alignment at M-pyrifera_M_contig107861:154..420-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107861.1666.1 ID=mRNA_M-pyrifera_M_contig107861.1666.1|Name=mRNA_M-pyrifera_M_contig107861.1666.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig107861:154..420- (Macrocystis pyrifera P11B4 male)
CTCACACGTGCGCGTGCCCCCCGCAAACGACAGTCCGCACCGGGCCTCAT
CAATGTCCAAGTAGTGGAGTACAGGCTCGTGTCGGGCCCGCTTCGGCAGC
ATGCGGAGTTCAAGGTGGAGACGGAGTCAACTCTGTCTTCGTTCCGTGCG
CGCTCCGCGAGCGTGTTCAGGAGGTACTCTGAGTTCACGTGGCTTGTACA
CACGCTGTCGTGTCGACACGTCGGTGTTGTCATTCCTCCTCTGCCCCCGG
CTGGATATCGTGAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig107861:154..420-

>mRNA_M-pyrifera_M_contig107861.1666.1 ID=mRNA_M-pyrifera_M_contig107861.1666.1|Name=mRNA_M-pyrifera_M_contig107861.1666.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig107861:154..420- (Macrocystis pyrifera P11B4 male)
CTCACACGTGCGCGTGCCCCCCGCAAACGACAGTCCGCACCGGGCCTCAT
CAATGTCCAAGTAGTGGAGTACAGGCTCGTGTCGGGCCCGCTTCGGCAGC
ATGCGGAGTTCAAGGTGGAGACGGAGTCAACTCTGTCTTCGTTCCGTGCG
CGCTCCGCGAGCGTGTTCAGGAGGTACTCTGAGTTCACGTGGCTTGTACA
CACGCTGTCGTGTCGACACGTCGGTGTTGTCATTCCTCCTCTGCCCCCGG
CTGGATATCGTGAGTAGCTCACACGTGCGCGTGCCCCCCGCAAACGACAG
TCCGCACCGGGCCTCATCAATGTCCAAGTAGTGGAGTACAGGCTCGTGTC
GGGCCCGCTTCGGCAGCATGCGGAGTTCAAGGTGGAGACGGAGTCAACTC
TGTCTTCGTTCCGTGCGCGCTCCGCGAGCGTGTTCAGGAGGTACTCTGAG
TTCACGTGGCTTGTACACACGCTGTCGTGTCGACACGTCGGTGTTGTCAT
TCCTCCTCTGCCCCCGGCTGGATATCGTGAGTAG
back to top