mRNA_M-pyrifera_M_contig10784.1664.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10784.1664.1
Unique NamemRNA_M-pyrifera_M_contig10784.1664.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10784.1664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10784contigM-pyrifera_M_contig10784:4714..5122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size409
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10784.1664.1prot_M-pyrifera_M_contig10784.1664.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10784 4754..5107 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.6383066-UTR-M-pyrifera_M_contig10784:4713..47531622815587.6383066-UTR-M-pyrifera_M_contig10784:4713..4753Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10784 4714..4753 +
1692277476.357911-UTR-M-pyrifera_M_contig10784:4713..47531692277476.357911-UTR-M-pyrifera_M_contig10784:4713..4753Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10784 4714..4753 +
1622815587.6621737-UTR-M-pyrifera_M_contig10784:5107..51221622815587.6621737-UTR-M-pyrifera_M_contig10784:5107..5122Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10784 5108..5122 +
1692277476.3801339-UTR-M-pyrifera_M_contig10784:5107..51221692277476.3801339-UTR-M-pyrifera_M_contig10784:5107..5122Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10784 5108..5122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.651018-CDS-M-pyrifera_M_contig10784:4753..51071622815587.651018-CDS-M-pyrifera_M_contig10784:4753..5107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10784 4754..5107 +
1692277476.3673832-CDS-M-pyrifera_M_contig10784:4753..51071692277476.3673832-CDS-M-pyrifera_M_contig10784:4753..5107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10784 4754..5107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10784.1664.1

>prot_M-pyrifera_M_contig10784.1664.1 ID=prot_M-pyrifera_M_contig10784.1664.1|Name=mRNA_M-pyrifera_M_contig10784.1664.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MGCLRVRRWARASCTRRLKPNAVVWDDKADHIYVYISREARCPFAAFPWP
AGTKRTRSRATVVVHLRGWGENQPQRLARDCVGLNRLGGTAATACGLPGY
QNVVADDMRGGVWGVRG*
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mRNA from alignment at M-pyrifera_M_contig10784:4714..5122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10784.1664.1 ID=mRNA_M-pyrifera_M_contig10784.1664.1|Name=mRNA_M-pyrifera_M_contig10784.1664.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=409bp|location=Sequence derived from alignment at M-pyrifera_M_contig10784:4714..5122+ (Macrocystis pyrifera P11B4 male)
GGCGAAGTGTAGACGGTTCTTCACGAAATAGTGGTACTTCATGGGATGCT
TGCGGGTTCGGAGGTGGGCGCGCGCCTCGTGCACGCGCCGCCTCAAGCCG
AACGCTGTTGTGTGGGACGACAAGGCAGACCACATTTACGTGTACATTTC
CCGAGAGGCCAGGTGTCCCTTCGCAGCCTTTCCCTGGCCAGCGGGAACCA
AGCGGACAAGATCAAGGGCAACCGTAGTTGTGCACCTACGCGGGTGGGGG
GAAAACCAACCGCAGCGGCTGGCACGTGACTGCGTAGGACTAAATAGGCT
TGGGGGAACGGCAGCAACGGCGTGCGGCTTGCCGGGGTACCAAAATGTTG
TGGCCGATGACATGCGAGGCGGAGTTTGGGGTGTTCGGGGTTGACACCTC
GACCACAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10784:4714..5122+

>mRNA_M-pyrifera_M_contig10784.1664.1 ID=mRNA_M-pyrifera_M_contig10784.1664.1|Name=mRNA_M-pyrifera_M_contig10784.1664.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig10784:4714..5122+ (Macrocystis pyrifera P11B4 male)
ATGGGATGCTTGCGGGTTCGGAGGTGGGCGCGCGCCTCGTGCACGCGCCG
CCTCAAGCCGAACGCTGTTGTGTGGGACGACAAGGCAGACCACATTTACG
TGTACATTTCCCGAGAGGCCAGGTGTCCCTTCGCAGCCTTTCCCTGGCCA
GCGGGAACCAAGCGGACAAGATCAAGGGCAACCGTAGTTGTGCACCTACG
CGGGTGGGGGGAAAACCAACCGCAGCGGCTGGCACGTGACTGCGTAGGAC
TAAATAGGCTTGGGGGAACGGCAGCAACGGCGTGCGGCTTGCCGGGGTAC
CAAAATGTTGTGGCCGATGACATGCGAGGCGGAGTTTGGGGTGTTCGGGG
TTGAATGGGATGCTTGCGGGTTCGGAGGTGGGCGCGCGCCTCGTGCACGC
GCCGCCTCAAGCCGAACGCTGTTGTGTGGGACGACAAGGCAGACCACATT
TACGTGTACATTTCCCGAGAGGCCAGGTGTCCCTTCGCAGCCTTTCCCTG
GCCAGCGGGAACCAAGCGGACAAGATCAAGGGCAACCGTAGTTGTGCACC
TACGCGGGTGGGGGGAAAACCAACCGCAGCGGCTGGCACGTGACTGCGTA
GGACTAAATAGGCTTGGGGGAACGGCAGCAACGGCGTGCGGCTTGCCGGG
GTACCAAAATGTTGTGGCCGATGACATGCGAGGCGGAGTTTGGGGTGTTC
GGGGTTGA
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