mRNA_M-pyrifera_M_contig10783.1662.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10783.1662.1
Unique NamemRNA_M-pyrifera_M_contig10783.1662.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10783.1662.1 vs. uniprot
Match: D7FIB1_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIB1_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 5.140e-34
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 2 
Query:    2 RYKKLMIPGSIYHLKKLGPESKAACAAAMLGGTPSEMRSRMYWMERERAEEFARLLMVDTAIVDHLPAAYEDALHALYGDGLPQR 256
            RY +L+IPG+IYH++KLGPES AA +A +    P  +RS++YWMER++ EEFARLLMVDTAIVDHLP AYEDALHALYGDGLP++
Sbjct:  374 RYTRLLIPGTIYHIRKLGPESAAAASAGVCSANPLGLRSKLYWMERQQPEEFARLLMVDTAIVDHLPLAYEDALHALYGDGLPRK 458
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BLAST of mRNA_M-pyrifera_M_contig10783.1662.1 vs. uniprot
Match: A0A6H5JNB4_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.190e-33
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 2 
Query:    2 RYKKLMIPGSIYHLKKLGPESKAACAAAMLGGTPSEMRSRMYWMERERAEEFARLLMVDTAIVDHLPAAYEDALHALYGDGLPQR 256
            RY +L+IPG+IYH++KLGPES AA +A +    P  +RS++YWMER++ EEF RLLMVDTAIVDHLP AYEDALHALYGDGLP+R
Sbjct:  499 RYTRLLIPGTIYHIRKLGPESAAAASAGVCSENPVGLRSKLYWMERQQPEEFERLLMVDTAIVDHLPLAYEDALHALYGDGLPRR 583
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10783.1662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIB1_ECTSI5.140e-3469.41Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JNB4_9PHAE6.190e-3369.41Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10783contigM-pyrifera_M_contig10783:3775..5784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue5.3e-27
Seed eggNOG ortholog2880.D7FIB1
KEGG koko:K13806
KEGG Pathwayko04723,ko04745,ko04925,map04723,map04745,map04925
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrograde trans-synaptic signaling by lipid
EggNOG OGsKOG2088@1,KOG2088@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size304
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10783.1662.1prot_M-pyrifera_M_contig10783.1662.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10783 3799..5768 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.578368-UTR-M-pyrifera_M_contig10783:3774..37981622815587.578368-UTR-M-pyrifera_M_contig10783:3774..3798Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10783 3775..3798 -
1692277476.3055089-UTR-M-pyrifera_M_contig10783:3774..37981692277476.3055089-UTR-M-pyrifera_M_contig10783:3774..3798Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10783 3775..3798 -
1622815587.6082191-UTR-M-pyrifera_M_contig10783:5768..57841622815587.6082191-UTR-M-pyrifera_M_contig10783:5768..5784Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10783 5769..5784 -
1692277476.349059-UTR-M-pyrifera_M_contig10783:5768..57841692277476.349059-UTR-M-pyrifera_M_contig10783:5768..5784Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10783 5769..5784 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.5879552-CDS-M-pyrifera_M_contig10783:3798..39241622815587.5879552-CDS-M-pyrifera_M_contig10783:3798..3924Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10783 3799..3924 -
1692277476.3172452-CDS-M-pyrifera_M_contig10783:3798..39241692277476.3172452-CDS-M-pyrifera_M_contig10783:3798..3924Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10783 3799..3924 -
1622815587.5972955-CDS-M-pyrifera_M_contig10783:5630..57681622815587.5972955-CDS-M-pyrifera_M_contig10783:5630..5768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10783 5631..5768 -
1692277476.336155-CDS-M-pyrifera_M_contig10783:5630..57681692277476.336155-CDS-M-pyrifera_M_contig10783:5630..5768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10783 5631..5768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10783.1662.1

>prot_M-pyrifera_M_contig10783.1662.1 ID=prot_M-pyrifera_M_contig10783.1662.1|Name=mRNA_M-pyrifera_M_contig10783.1662.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
MIPGSIYHLKKLGPESKAACAAAMLGGTPSEMRSRMYWMERERAEEFARL
LMVDTAIVDHLPAAYEDALHALYGDGLPQREQEQDEE*
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mRNA from alignment at M-pyrifera_M_contig10783:3775..5784-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10783.1662.1 ID=mRNA_M-pyrifera_M_contig10783.1662.1|Name=mRNA_M-pyrifera_M_contig10783.1662.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at M-pyrifera_M_contig10783:3775..5784- (Macrocystis pyrifera P11B4 male)
CAGATACAAGAAGCTGATGATCCCGGGAAGTATTTACCACTTGAAGAAGC
TCGGGCCGGAGAGCAAGGCCGCATGTGCCGCCGCCATGCTTGGTGGAACT
CCCTCGGAGATGCGCTCGCGGATGTACTGGATGGAGAGAGAACGCGCGGA
AGAGGTGGGAGTGGGAGAGGTTTGGGGAGGGGGTGGGTGGGGGTGGGGGT
TGGGAGAAGAGGTTGAGGGAGGGTGAGAGTGGAAGTGGGGGGTTGGGGAG
GGAGGGACAGCAGCGTTTGTTGAGATGGGGCGGGGGGGGGGGGTGGGGGG
GGTACTCCTTTGTTGCTTTCCTCAGTTATTTGACCATTGACCACGCACCC
CTTTCGAGACGGAGCACCGTTCCTAGCACCGTTCCTACTCCTAATAGAGA
CACCTCCAGCATTTGGGCGCTCATTTCGTTGTTTCTATATAGTACGTAGT
TTTGTTTTTGTAAATCTTGTCCCCTTCCTGTTTCGCCGCCTGTGGCCACC
ATCTATCTCGTAGAATAGCGATCGTTTTAACACTGCTCTCTAGTACACCA
AACTCCTTTATGCCACGTTCGTCTATTTGTCCCATCTCCTGTTCTAAGAC
ATCCCGTTTCTCTTTGTGCGATTCTCCTACTATGTGAGTTCTACGCTCTA
TTGCTTTGCCACACGGGGACATCTGTGCGTCTACTTCCTTCTCCCGGCTA
CTGGTATACCTATTTCTTCTTTCTGGCAGATCCAGGTCACCTACACGAAA
TCGCAGGTTCAGCGTTTTCTATAATACGTTTTCGTTCGTACCCCTTCGCT
CAATCCCCCTTATATTTCTTAAGTGTTTCTCCGATTTCACCCTGTTCCTT
AGGGCTAGCCTTTCCCTTCTTTCTATCATTTCTTCTGCTTCTGTCTCGTA
CGTCCCAAACTTCTCTGCGGACAATATCTCTTCTTGGGTTCCTCCTTTAT
CCTTCCATTCTTTCTCAACGACGCTATCCCACCTTGTTCCAGCTTTCGCC
CTTTTGTTACTTTTTCCCATACGGTTCTATCAACTATGGCTGGCAAACTC
TTTTTTGGCCTGTTCCTTACTTGTATGTTGCTGTTTCAACCTTCTCGTGT
CTCTACTTGTCTTGAGTGGGCACATTCCCAGTTCTGCTATTAACACTGTA
TTACTCGTCGTACTTGAGCATCTTAGTTTTTTTTTTTCAGCTGCTGTCAC
CTGTACTGTTTCCGACTGGTTCACGAACTGAGGTGGGGGGAAGGGGGGGG
GGCTTGCTTACTGGGCTAGGGAGCAGGGGGGCGCGAGGGGGTCGGCGGTG
CTCACTGAGCTATACGATGGGTAACCCTGCATGCTCAACAGAGTGGTGTT
TGTGTCGCGACTATTGCAGCATAATACAGTACAGCATTCTTCACTGAAGT
GCCAGGACAGTCTTGGCACAACGAGAGCCTTGTGGCACGTTGTCCGGAGC
AGGTCGCCGAATGCAGCGCTTATTCTCGGTCGACGCCATAAAAGAGGCAT
TCTGTGCCGGGGGAGAGGGTCGGCCAGTACCGTACTGTAGTAATAGCCTT
CACCGATCATTCACCGCCTTTTCGTCCTTGTTACTTTGTGGGAAAATGAG
GCTTTTCACAGATTGGTAGTGGAACACGGCAGTCAGGCCGTGCCCTTTCT
ATGTTTCCCTCCAACGTACGTGTTTTTTACTCTCGTTCCCCCCTCCCGAG
ACATTGGCGAGCTTTACTTTTCTGACTTATTTCCTTCCTTACTGCCTTCT
TTCGTCTGTTGCCCCCCCCCCCTCCCCGTCCCCCCCCCCTTTGCTCCCCT
CTCCCCCCCCCTCCTCACCCCCTTCCTCTGCTCCCGGCGGCGTGCTTGCC
GAAACCAAAGTTCGCGCGTCTTCTCATGGTCGACACGGCGATAGTAGACC
ATCTTCCAGCAGCATACGAGGATGCGCTGCATGCTTTGTACGGTGACGGT
CTCCCTCAGCGAGAGCAAGAACAGGATGAAGAATAATAAAAACGACATTT
TAAGAACTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10783:3775..5784-

>mRNA_M-pyrifera_M_contig10783.1662.1 ID=mRNA_M-pyrifera_M_contig10783.1662.1|Name=mRNA_M-pyrifera_M_contig10783.1662.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig10783:3775..5784- (Macrocystis pyrifera P11B4 male)
ATGATCCCGGGAAGTATTTACCACTTGAAGAAGCTCGGGCCGGAGAGCAA
GGCCGCATGTGCCGCCGCCATGCTTGGTGGAACTCCCTCGGAGATGCGCT
CGCGGATGTACTGGATGGAGAGAGAACGCGCGGAAGAGATGATCCCGGGA
AGTATTTACCACTTGAAGAAGCTCGGGCCGGAGAGCAAGGCCGCATGTGC
CGCCGCCATGCTTGGTGGAACTCCCTCGGAGATGCGCTCGCGGATGTACT
GGATGGAGAGAGAACGCGCGGAAGAGTTCGCGCGTCTTCTCATGGTCGAC
ACGGCGATAGTAGACCATCTTCCAGCAGCATACGAGGATGCGCTGCATGC
TTTGTACGGTGACGGTCTCCCTCAGCGAGAGCAAGAACAGGATGAAGAAT
AATTCGCGCGTCTTCTCATGGTCGACACGGCGATAGTAGACCATCTTCCA
GCAGCATACGAGGATGCGCTGCATGCTTTGTACGGTGACGGTCTCCCTCA
GCGAGAGCAAGAACAGGATGAAGAATAA
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