mRNA_M-pyrifera_M_contig107800.1658.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107800.1658.1
Unique NamemRNA_M-pyrifera_M_contig107800.1658.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107800.1658.1 vs. uniprot
Match: F0YFV5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFV5_AURAN)

HSP 1 Score: 69.7 bits (169), Expect = 2.640e-11
Identity = 49/136 (36.03%), Postives = 73/136 (53.68%), Query Frame = 1
Query:    1 ITSLSSSRPYFINVVAVGLGGVSSSAVVPFATTPTTRVP----DAPTLVQSGPIGREALHVRWTAPENDGGEPIHAYKVEWDRSDNFGSSARS-----ITQSASSGTEYTIEGLSSGSTYYVRVFAINARGAGEAS 381
            I+SL+  + Y++ V A    G S     P +T P++  P     AP+ V+ G      L + +  P +DGG+ + +Y+VEWD S +F S + S     +   AS    YTI+ L++ +TYYVRV  INA G G AS
Sbjct: 14770 ISSLTKGQEYYVRVSA----GNSQGYGTPQSTAPSSAAPYEESGAPSDVELGITSDSMLTIGYAYPADDGGDDVSSYRVEWDTSSSFNSLSASPHKGTVDVDASVAMSYTIDELTTSTTYYVRVLPINAAGYGTAS 14901          
BLAST of mRNA_M-pyrifera_M_contig107800.1658.1 vs. uniprot
Match: A0A2D4BES8_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BES8_PYTIN)

HSP 1 Score: 68.6 bits (166), Expect = 6.520e-11
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    1 ITSLSSSRPYFINVVA---VGLGGVSSSAVVPFATTPTTRVPDAPTLVQSGPIGREALHVRWTAPENDGGEPIHAYKVEWDRS---DNFGSSARSITQSASSGTEYTIEGLSSGSTYYVRVFAINARGAG 372
            I++L     YF+ V A    G GG   S+  P +  P T  P APT V  G      L V+W  P+++GG+ I  Y V+WD S   D+ G++A   T +  +   YTI  L+ G+ YYVRVFA+N+ G G
Sbjct: 1983 ISNLVKGTFYFVRVKARNSQGFGGFQISS--PASLNPYT-TPSAPTKVTMGVTSSTMLTVQWNDPDDNGGDAISGYTVQWDISAGFDSIGATATKATITDVTQRSYTITLLTPGTVYYVRVFAMNSGGVG 2109          
BLAST of mRNA_M-pyrifera_M_contig107800.1658.1 vs. uniprot
Match: A0A2D4CCQ8_PYTIN (Similar to titin isoform N2B putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCQ8_PYTIN)

HSP 1 Score: 68.6 bits (166), Expect = 6.600e-11
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    1 ITSLSSSRPYFINVVA---VGLGGVSSSAVVPFATTPTTRVPDAPTLVQSGPIGREALHVRWTAPENDGGEPIHAYKVEWDRS---DNFGSSARSITQSASSGTEYTIEGLSSGSTYYVRVFAINARGAG 372
            I++L     YF+ V A    G GG   S+  P +  P T  P APT V  G      L V+W  P+++GG+ I  Y V+WD S   D+ G++A   T +  +   YTI  L+ G+ YYVRVFA+N+ G G
Sbjct: 3338 ISNLVKGTFYFVRVKARNSQGFGGFQISS--PASLNPYT-TPSAPTKVTMGVTSSTMLTVQWNDPDDNGGDAISGYTVQWDISAGFDSIGATATKATITDVTQRSYTITLLTPGTVYYVRVFAMNSGGVG 3464          
BLAST of mRNA_M-pyrifera_M_contig107800.1658.1 vs. uniprot
Match: A0A2D4CCD6_PYTIN (Similar to titin isoform N2B putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCD6_PYTIN)

HSP 1 Score: 68.6 bits (166), Expect = 6.610e-11
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    1 ITSLSSSRPYFINVVA---VGLGGVSSSAVVPFATTPTTRVPDAPTLVQSGPIGREALHVRWTAPENDGGEPIHAYKVEWDRS---DNFGSSARSITQSASSGTEYTIEGLSSGSTYYVRVFAINARGAG 372
            I++L     YF+ V A    G GG   S+  P +  P T  P APT V  G      L V+W  P+++GG+ I  Y V+WD S   D+ G++A   T +  +   YTI  L+ G+ YYVRVFA+N+ G G
Sbjct: 3776 ISNLVKGTFYFVRVKARNSQGFGGFQISS--PASLNPYT-TPSAPTKVTMGVTSSTMLTVQWNDPDDNGGDAISGYTVQWDISAGFDSIGATATKATITDVTQRSYTITLLTPGTVYYVRVFAMNSGGVG 3902          
BLAST of mRNA_M-pyrifera_M_contig107800.1658.1 vs. uniprot
Match: V6AS92_9ARCH (Uncharacterized protein n=2 Tax=Candidatus Nitrosotenuis uzonensis TaxID=1407055 RepID=V6AS92_9ARCH)

HSP 1 Score: 67.4 bits (163), Expect = 1.600e-10
Identity = 47/134 (35.07%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    1 ITSLSSSRPY-FINVVAVGLGG--VSSSA-VVPFATT------PTTRVPDAPTLVQSGPIGREALHVRWTAPENDGGEPIHAYKVEWDRSDNFGSSARSITQSASSGTEYTIEGLSSGSTYYVRVFAINARGAG 372
            +T L++   Y F+      LGG  +S+ A   P +T+      PTT  P  PT + + PI    +++ WTAP N+GG PI  YK+E  + D       ++T + ++ T+Y+  GL++G+TYY +V AIN+ G G
Sbjct:  587 VTGLTTGNTYTFVVSAYFTLGGSPISNEASATPLSTSTAPQSQPTTSPPGIPTGLSASPILPTQINLSWTAPSNNGGSPITGYKIEVRKGDG---QYETLTSTQNATTKYSHAGLTTGTTYYYKVSAINSAGIG 717          
BLAST of mRNA_M-pyrifera_M_contig107800.1658.1 vs. uniprot
Match: A0A8K1FBC1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBC1_PYTOL)

HSP 1 Score: 66.2 bits (160), Expect = 4.260e-10
Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    1 ITSLSSSRPYFINVVAVGLGGVSSSAVV-PFATTPTTRVPDAPTLVQSGPIGREALHVRWTAPENDGGEPIHAYKVEWDRSDNFGSSARSITQSASSGT---EYTIEGLSSGSTYYVRVFAINARGAG 372
            I++L     Y++ V A    G     +  P +  P T  P APT V  G      L V+W+ P++DGG+ I  Y V+WD S  F S +   T++  +      YTI  L+ G+TYYVRV AIN+ GAG
Sbjct: 4159 ISNLVKGTFYYVRVKAKNSQGYGQYQISSPTSLNPYT-TPSAPTQVLMGVTSSTMLTVQWSIPDDDGGDAISGYLVQWDISAGFDSLSAEATKAKITDVTQRSYTITLLTPGTTYYVRVSAINSGGAG 4285          
BLAST of mRNA_M-pyrifera_M_contig107800.1658.1 vs. uniprot
Match: UPI001CC3F09F (fibronectin type III domain-containing protein n=1 Tax=Ferruginibacter sp. KIS38-8 TaxID=2875540 RepID=UPI001CC3F09F)

HSP 1 Score: 65.5 bits (158), Expect = 7.770e-10
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 1
Query:    1 ITSLSSSRPYFINVVAVGLGGVSSSAVVPFATTPTTRVPDAPTLVQSGPIGREALHVRWTAPENDGGEPIHAYKVEWDRSDNFGSSARSITQSASSGTEYTIEGLSSGSTYYVRVFAINARGAGEAS 381
            ++SL+++  Y  +  AV   GV+ +A   F T     +P+AP +  +  +      V WTAP   GG     Y V++   + F S   SIT  +SS     I GL+ GSTYY RVFA+N  G   AS
Sbjct:  403 LSSLTANTLYHSSAFAVNGAGVALAADASFTT-----LPNAPGIGTTDNVTNGGFTVHWTAPS--GGSASFTYSVDYSTDNTFQSGVSSITNISSSNLSQAISGLTPGSTYYARVFAVNTTGTSGAS 522          
BLAST of mRNA_M-pyrifera_M_contig107800.1658.1 vs. uniprot
Match: K3WLI2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLI2_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 7.800e-10
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 1
Query:    1 ITSLSSSRPYFINVVAVGLGGVSSSAVVPFATTPTTRVPDAPTLVQSGPIGREALHVRWTAPENDGGEPIHAYKVEWDRSDNFGSSARSITQSASSGT---EYTIEGLSSGSTYYVRVFAINARGAG 372
            I+SL   + YF+ V A    G     +   A+      P APT V  G      L V+W  P++DGG+ + AY V+WD S +F S     T++    T    YTI  L+  + Y+VRVFA+N  G G
Sbjct: 2006 ISSLVKGKFYFVRVKAKNSQGYGQYQISSPASLNPYTTPSAPTQVLLGVTSSTMLTVQWNVPDDDGGDAVTAYVVQWDISASFDSLGADATKAKIIDTTQRSYTITLLTPETVYFVRVFAVNTGGLG 2132          
BLAST of mRNA_M-pyrifera_M_contig107800.1658.1 vs. uniprot
Match: A0A5D6XPZ3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPZ3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.020e-9
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 1
Query:    1 ITSLSSSRPYFINVVAVGLGGVSSSAVVPFATTPTTRVPDAPTLVQSGPIGREALHVRWTAPENDGGEPIHAYKVEWDRS---DNFGSSARSITQSASSGTEYTIEGLSSGSTYYVRVFAINARGAG 372
            I+SL     YF+ V A    G     +   A+      P APT V  G      L V+W  P++DGG+ I AY V+WD S   D+ G+ A  +  + ++   YTI  L+  + Y+VRV A+NA G G
Sbjct: 7067 ISSLVKGSFYFVRVKAANSQGYGQYQISSPASLNPYTTPSAPTKVALGVTCSTMLTVQWDKPDDDGGDTITAYVVQWDISASFDSLGAEATKVKIADTAQRSYTITLLTPDTVYFVRVLAMNAGGLG 7193          
BLAST of mRNA_M-pyrifera_M_contig107800.1658.1 vs. uniprot
Match: A0A8J2SQT3_9STRA (Hypothetical protein n=13 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQT3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.030e-9
Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 ITSLSSSRPYFINVVAVGLGGVSSSAVVPFATTPTTRVP----DAPTLVQSGPIGREALHVRWTAPENDGGEPIHAYKVEWDRSDNFGSSARS-----ITQSASSGTEYTIEGLSSGSTYYVRVFAINARGAGEAS 381
            ++ L   + Y++ V A    G  +    P  + P++  P     AP+ V  G      L + +  PE+DGG+ I AY+VEWD S +F S + S     +   A+    YTI+ LS  +TYYV+V AINA G G AS
Sbjct: 18481 VSGLDKGQRYYVRVSACNGQGCGT----PQGSAPSSAAPYEESGAPSNVVLGVTSDSMLTLGYGYPEDDGGDSITAYRVEWDTSSSFNSLSASPHKGTVDVDATVALSYTIDELSPSTTYYVKVSAINAAGYGAAS 18612          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107800.1658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YFV5_AURAN2.640e-1136.03Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A2D4BES8_PYTIN6.520e-1138.46Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A2D4CCQ8_PYTIN6.600e-1138.46Similar to titin isoform N2B putative (Fragment) n... [more]
A0A2D4CCD6_PYTIN6.610e-1138.46Similar to titin isoform N2B putative (Fragment) n... [more]
V6AS92_9ARCH1.600e-1035.07Uncharacterized protein n=2 Tax=Candidatus Nitroso... [more]
A0A8K1FBC1_PYTOL4.260e-1037.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001CC3F09F7.770e-1035.43fibronectin type III domain-containing protein n=1... [more]
K3WLI2_GLOUD7.800e-1035.43Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XPZ3_9STRA2.020e-935.43Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8J2SQT3_9STRA2.030e-935.29Hypothetical protein n=13 Tax=Pelagomonas calceola... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107800contigM-pyrifera_M_contig107800:7..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog67593.Physo137119
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Fibronectin type 3 domain
EggNOG OGs3QH3K@4776,KOG0613@1,KOG0613@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.4135551-CDS-M-pyrifera_M_contig107800:6..3871622815587.4135551-CDS-M-pyrifera_M_contig107800:6..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107800 7..387 +
1692277476.2336035-CDS-M-pyrifera_M_contig107800:6..3871692277476.2336035-CDS-M-pyrifera_M_contig107800:6..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107800 7..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107800.1658.1prot_M-pyrifera_M_contig107800.1658.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107800 7..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107800.1658.1

>prot_M-pyrifera_M_contig107800.1658.1 ID=prot_M-pyrifera_M_contig107800.1658.1|Name=mRNA_M-pyrifera_M_contig107800.1658.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
ITSLSSSRPYFINVVAVGLGGVSSSAVVPFATTPTTRVPDAPTLVQSGPI
GREALHVRWTAPENDGGEPIHAYKVEWDRSDNFGSSARSITQSASSGTEY
TIEGLSSGSTYYVRVFAINARGAGEAS
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mRNA from alignment at M-pyrifera_M_contig107800:7..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107800.1658.1 ID=mRNA_M-pyrifera_M_contig107800.1658.1|Name=mRNA_M-pyrifera_M_contig107800.1658.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig107800:7..387+ (Macrocystis pyrifera P11B4 male)
ATCACATCCCTCTCCTCCTCTCGTCCTTACTTTATCAATGTTGTAGCTGT GGGATTGGGGGGTGTGAGTAGTTCAGCTGTGGTTCCATTTGCAACCACTC CAACCACTCGCGTTCCAGATGCACCCACGTTGGTACAATCTGGTCCAATT GGTCGTGAGGCATTGCATGTTCGTTGGACTGCTCCAGAGAATGATGGTGG TGAGCCAATCCATGCATACAAGGTAGAATGGGACCGCAGTGACAACTTTG GAAGTTCTGCACGTTCTATCACCCAGAGTGCGAGTAGTGGAACGGAATAC ACCATCGAAGGATTGTCTAGTGGATCTACCTACTATGTTCGAGTGTTCGC GATCAATGCCCGTGGTGCTGGTGAAGCATCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107800:7..387+

>mRNA_M-pyrifera_M_contig107800.1658.1 ID=mRNA_M-pyrifera_M_contig107800.1658.1|Name=mRNA_M-pyrifera_M_contig107800.1658.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig107800:7..387+ (Macrocystis pyrifera P11B4 male)
ATCACATCCCTCTCCTCCTCTCGTCCTTACTTTATCAATGTTGTAGCTGT
GGGATTGGGGGGTGTGAGTAGTTCAGCTGTGGTTCCATTTGCAACCACTC
CAACCACTCGCGTTCCAGATGCACCCACGTTGGTACAATCTGGTCCAATT
GGTCGTGAGGCATTGCATGTTCGTTGGACTGCTCCAGAGAATGATGGTGG
TGAGCCAATCCATGCATACAAGGTAGAATGGGACCGCAGTGACAACTTTG
GAAGTTCTGCACGTTCTATCACCCAGAGTGCGAGTAGTGGAACGGAATAC
ACCATCGAAGGATTGTCTAGTGGATCTACCTACTATGTTCGAGTGTTCGC
GATCAATGCCCGTGGTGCTGGTGAAGCATCCATCACATCCCTCTCCTCCT
CTCGTCCTTACTTTATCAATGTTGTAGCTGTGGGATTGGGGGGTGTGAGT
AGTTCAGCTGTGGTTCCATTTGCAACCACTCCAACCACTCGCGTTCCAGA
TGCACCCACGTTGGTACAATCTGGTCCAATTGGTCGTGAGGCATTGCATG
TTCGTTGGACTGCTCCAGAGAATGATGGTGGTGAGCCAATCCATGCATAC
AAGGTAGAATGGGACCGCAGTGACAACTTTGGAAGTTCTGCACGTTCTAT
CACCCAGAGTGCGAGTAGTGGAACGGAATACACCATCGAAGGATTGTCTA
GTGGATCTACCTACTATGTTCGAGTGTTCGCGATCAATGCCCGTGGTGCT
GGTGAAGCATCC
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