mRNA_M-pyrifera_M_contig107795.1657.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107795.1657.1
Unique NamemRNA_M-pyrifera_M_contig107795.1657.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107795.1657.1 vs. uniprot
Match: A0A0C9SCQ4_AMBAM (Putative endonuclease (Fragment) n=1 Tax=Amblyomma americanum TaxID=6943 RepID=A0A0C9SCQ4_AMBAM)

HSP 1 Score: 105 bits (263), Expect = 1.610e-26
Identity = 57/118 (48.31%), Postives = 79/118 (66.95%), Query Frame = 1 
Query:    7 AAELAEVEALIKSVSFYRNKAKALKDMARRVNSGEWDGDIPNTLAGLKDLKGVGPKIAALALQTAWGTEAADVSIGVDVHLHNVSNRLGWVDDGI-SDDAARRQLESWLPIELWAEVS 357
            AA+  ++E LI  VSFY+NKAK LK  A+ V   ++DGDIP+++ GL  L GVGPK+A LA+   WG     V IGVD H+H ++NRLGW+     + +  R+ LE+WLP +LW EV+
Sbjct:   54 AADEKQIEELIYPVSFYKNKAKHLKQTAQ-VLLEQYDGDIPDSVEGLCKLPGVGPKMAYLAMSCGWGRT---VGIGVDTHVHRIANRLGWLPAPTKTPEQTRKGLEAWLPRDLWDEVN 167
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BLAST of mRNA_M-pyrifera_M_contig107795.1657.1 vs. uniprot
Match: UPI001899DB22 (endonuclease III-like protein 1 n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI001899DB22)

HSP 1 Score: 108 bits (271), Expect = 4.570e-26
Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 1 
Query:    7 AAELAEVEALIKSVSFYRNKAKALKDMARRVNSGEWDGDIPNTLAGLKDLKGVGPKIAALALQTAWGTEAADVSIGVDVHLHNVSNRLGWVDDGI-SDDAARRQLESWLPIELWAEVS 357
            AA+  ++E LI  VSFY+NKAK LK  A+ V   ++DGDIP+++ GL  L GVGPK+A LA+   WG     V IGVD H+H +SNRLGW+     + +  R+ LE+WLP ELW EV+
Sbjct:  203 AADEKQIEQLIYPVSFYKNKAKHLKQTAK-VLLEKYDGDIPDSVEGLCSLPGVGPKMAYLAMSCGWGHT---VGIGVDTHVHRISNRLGWLPTPTKTPEETRKALEAWLPRELWDEVN 316
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BLAST of mRNA_M-pyrifera_M_contig107795.1657.1 vs. uniprot
Match: A0A6M2CJQ6_RHIMP (Endonuclease III homolog n=3 Tax=Rhipicephalus TaxID=34630 RepID=A0A6M2CJQ6_RHIMP)

HSP 1 Score: 107 bits (267), Expect = 7.150e-26
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:   10 AELAEVEALIKSVSFYRNKAKALKDMARRVNSGEWDGDIPNTLAGLKDLKGVGPKIAALALQTAWGTEAADVSIGVDVHLHNVSNRLGWVDDGISD-DAARRQLESWLPIELWAEVS 357
            A+  ++E LI  VSFY+NKAK LK  A+ V   ++DGDIP+++ GL  L GVGPK+A LA+   WG     V IGVD H+H +SNRLGW+       +  R+ LE+WLP ELW EV+
Sbjct:  151 ADEKQIERLIYPVSFYKNKAKHLKQTAK-VLLEKYDGDIPDSVEGLCSLPGVGPKMAYLAMSCGWGRT---VGIGVDTHVHRISNRLGWLPAPTKTAEQTRKALEAWLPRELWDEVN 263
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BLAST of mRNA_M-pyrifera_M_contig107795.1657.1 vs. uniprot
Match: L7LQV4_RHIPC (Endonuclease III homolog n=3 Tax=Rhipicephalus TaxID=426455 RepID=L7LQV4_RHIPC)

HSP 1 Score: 107 bits (268), Expect = 7.350e-26
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 1 
Query:   10 AELAEVEALIKSVSFYRNKAKALKDMARRVNSGEWDGDIPNTLAGLKDLKGVGPKIAALALQTAWGTEAADVSIGVDVHLHNVSNRLGWVDDGI-SDDAARRQLESWLPIELWAEVS 357
            A+  ++E LI  VSFY+NKAK LK  A+ V   ++DGDIP+++ GL  L GVGPK+A LA+   WG     V IGVD H+H +SNRLGW+     + +  R+ LE+WLP ELW EV+
Sbjct:  172 ADEKQIELLIYPVSFYKNKAKHLKQTAK-VLLEKYDGDIPDSVEGLCSLPGVGPKMAYLAMSCGWGRT---VGIGVDTHVHRISNRLGWLPAPTKTPEQTRKALEAWLPRELWDEVN 284
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BLAST of mRNA_M-pyrifera_M_contig107795.1657.1 vs. uniprot
Match: A0A131XDA0_9ACAR (Endonuclease III homolog n=1 Tax=Hyalomma excavatum TaxID=257692 RepID=A0A131XDA0_9ACAR)

HSP 1 Score: 107 bits (267), Expect = 8.840e-26
Identity = 57/117 (48.72%), Postives = 78/117 (66.67%), Query Frame = 1 
Query:   10 AELAEVEALIKSVSFYRNKAKALKDMARRVNSGEWDGDIPNTLAGLKDLKGVGPKIAALALQTAWGTEAADVSIGVDVHLHNVSNRLGWVDDGI-SDDAARRQLESWLPIELWAEVS 357
            A+  ++E LI  VSFY+NKAK LK  A+ +   ++DGDIP+++ GL  L GVGPK+A LA+   WG     V IGVD H+H +SNRLGW+     + +  R+ LE+WLP ELW EV+
Sbjct:  163 ADEKQIEELIYPVSFYKNKAKHLKQTAK-ILLEKYDGDIPDSVEGLCSLPGVGPKMAYLAMSCGWGRT---VGIGVDTHVHRISNRLGWLPAPTKTPEQTRKALEAWLPRELWDEVN 275
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BLAST of mRNA_M-pyrifera_M_contig107795.1657.1 vs. uniprot
Match: A0A1Y2D2X4_9FUNG (Endonuclease III homolog n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2D2X4_9FUNG)

HSP 1 Score: 104 bits (260), Expect = 3.100e-25
Identity = 52/118 (44.07%), Postives = 79/118 (66.95%), Query Frame = 1 
Query:    7 AAELAEVEALIKSVSFYRNKAKALKDMARRVNSGEWDGDIPNTLAGLKDLKGVGPKIAALALQTAWGTEAADVSIGVDVHLHNVSNRLGWVDDGISD-DAARRQLESWLPIELWAEVS 357
            A E   +E +++ VSF++ KA  LK+ A+ V   +++GD+PNTL GL +  GVGPK+A LALQ  W      V IGVD H+H ++N+LGWV    ++ ++ R++LE WLP + WAE++
Sbjct:  106 ATETQTLEDILRGVSFHKRKAVYLKETAKMVLD-KFEGDVPNTLEGLLEFPGVGPKMAYLALQCCWDIS---VGIGVDTHVHRIANKLGWVSTKKTEPESTRKELEDWLPKKYWAEIN 219
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BLAST of mRNA_M-pyrifera_M_contig107795.1657.1 vs. uniprot
Match: A0A1B6J9Y1_9HEMI (Endonuclease III homolog n=2 Tax=Proconiini TaxID=565685 RepID=A0A1B6J9Y1_9HEMI)

HSP 1 Score: 103 bits (256), Expect = 6.950e-25
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:   34 LIKSVSFYRNKAKALKDMARRVNSGEWDGDIPNTLAGLKDLKGVGPKIAALALQTAWGTEAADVSIGVDVHLHNVSNRLGWVDDGISDDAARRQLESWLPIELWAEVS 357
            LI  V F+++K K +K  A R+   E+DGDIP+++  L  L GVGPK+A L +   WGT      IGVD H+H +SNRLGWV D  + +  R QLE WLP  LW+EV+
Sbjct:   74 LIYPVGFWKSKVKYIK-AATRILKDEYDGDIPDSVEKLCKLPGVGPKMAHLCMNVGWGTVTG---IGVDTHVHRISNRLGWVRDTKTPEKTRAQLEDWLPQSLWSEVN 177
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BLAST of mRNA_M-pyrifera_M_contig107795.1657.1 vs. uniprot
Match: A0A2P6NR77_9EUKA (Endonuclease III homolog n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NR77_9EUKA)

HSP 1 Score: 107 bits (268), Expect = 8.040e-25
Identity = 53/119 (44.54%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:    1 MDAAELAEVEALIKSVSFYRNKAKALKDMARRVNSGEWDGDIPNTLAGLKDLKGVGPKIAALALQTAWGTEAADVSIGVDVHLHNVSNRLGWVDDGISDDAARRQLESWLPIELWAEVS 357
            M AA+++ ++ LIK V F++ KA+ +KD  + +   +++GDIP +L GL +L G+GPK+A L +Q AW      V IGVDVH+H +SNRL WV +  S +  R++LESWLP E W +++
Sbjct:  582 MLAADISVIDGLIKKVGFHQRKAQYIKDTTKILKE-KYEGDIPESLDGLLELPGIGPKMAFLIMQCAWDKS---VGIGVDVHVHRISNRLRWVKNTKSPEDTRKELESWLPEEHWNQIN 696
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BLAST of mRNA_M-pyrifera_M_contig107795.1657.1 vs. uniprot
Match: A0A8H7S7S6_9FUNG (Endonuclease III homolog n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S7S6_9FUNG)

HSP 1 Score: 105 bits (262), Expect = 9.780e-25
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:   25 VEALIKSVSFYRNKAKALKDMARRVNSGEWDGDIPNTLAGLKDLKGVGPKIAALALQTAWGTEAADVSIGVDVHLHNVSNRLGWVD--DGISDDAARRQLESWLPIELWAEVS 357
            ++  IKSV F+  KAK +KD A  +   +++GDIP+T+ GL  L GVGPK+  LALQ AW   A    IGVDVH+H +SNRLGW D  +G  +D  R+QLESWLP E W  ++
Sbjct:  166 LDTYIKSVGFHNRKAKYIKDTAIILRD-KYNGDIPDTIEGLTSLPGVGPKMGYLALQCAWKINAG---IGVDVHVHRISNRLGWCDTVNGQPEDT-RKQLESWLPKEYWRPIN 273
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BLAST of mRNA_M-pyrifera_M_contig107795.1657.1 vs. uniprot
Match: A0A2Z6R1U1_9GLOM (Endonuclease III homolog n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6R1U1_9GLOM)

HSP 1 Score: 104 bits (259), Expect = 1.020e-24
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:   37 IKSVSFYRNKAKALKDMARRVNSGEWDGDIPNTLAGLKDLKGVGPKIAALALQTAWGTEAADVSIGVDVHLHNVSNRLGWVD-DGISDDAARRQLESWLPIELWAEVS 357
            I  V F+R KA  LK  A++    E+DGDIPNT+ GL  L GVGPK+A L +Q AW     +  IGVDVH+H ++NRLGW + +    +A R+ LESWLP  LW E++
Sbjct:  162 ISKVGFHRKKATYLKQSAKKCKE-EYDGDIPNTVEGLMKLPGVGPKMAYLCMQVAW---KQNEGIGVDVHVHRITNRLGWCNTEQAGPEATRKVLESWLPRSLWREIN 265
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107795.1657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C9SCQ4_AMBAM1.610e-2648.31Putative endonuclease (Fragment) n=1 Tax=Amblyomma... [more]
UPI001899DB224.570e-2650.00endonuclease III-like protein 1 n=1 Tax=Dermacento... [more]
A0A6M2CJQ6_RHIMP7.150e-2649.57Endonuclease III homolog n=3 Tax=Rhipicephalus Tax... [more]
L7LQV4_RHIPC7.350e-2649.57Endonuclease III homolog n=3 Tax=Rhipicephalus Tax... [more]
A0A131XDA0_9ACAR8.840e-2648.72Endonuclease III homolog n=1 Tax=Hyalomma excavatu... [more]
A0A1Y2D2X4_9FUNG3.100e-2544.07Endonuclease III homolog n=1 Tax=Rhizoclosmatium g... [more]
A0A1B6J9Y1_9HEMI6.950e-2548.15Endonuclease III homolog n=2 Tax=Proconiini TaxID=... [more]
A0A2P6NR77_9EUKA8.040e-2544.54Endonuclease III homolog n=1 Tax=Planoprotostelium... [more]
A0A8H7S7S6_9FUNG9.780e-2550.44Endonuclease III homolog n=1 Tax=Mucor circinatus ... [more]
A0A2Z6R1U1_9GLOM1.020e-2449.07Endonuclease III homolog n=2 Tax=Rhizophagus claru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107795contigM-pyrifera_M_contig107795:24..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog227086.JGI_V11_50850
Preferred nameNTHL1
KEGG koko:K10773,ko:K13123
KEGG Pathwayko03410,map03410
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006304,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0008534,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009636,GO:0009987,GO:0010035,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0016829,GO:0016835,GO:0018130,GO:0019104,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0031974,GO:0031981,GO:0033554,GO:0033683,GO:0034042,GO:0034043,GO:0034404,GO:0034599,GO:0034614,GO:0034641,GO:0034654,GO:0034655,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045008,GO:0046386,GO:0046434,GO:0046483,GO:0046677,GO:0046700,GO:0050896,GO:0051716,GO:0055086,GO:0070013,GO:0070301,GO:0070887,GO:0071236,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:0090305,GO:0097159,GO:0097237,GO:0140078,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901700,GO:1901701
EggNOG free text desc.oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
EggNOG OGsCOG0177@1,KOG1921@2759
EC4.2.99.18
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Exons1
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.3763993-CDS-M-pyrifera_M_contig107795:23..3801622815587.3763993-CDS-M-pyrifera_M_contig107795:23..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107795 24..380 +
1692277476.220338-CDS-M-pyrifera_M_contig107795:23..3801692277476.220338-CDS-M-pyrifera_M_contig107795:23..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107795 24..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107795.1657.1prot_M-pyrifera_M_contig107795.1657.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107795 24..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107795.1657.1

>prot_M-pyrifera_M_contig107795.1657.1 ID=prot_M-pyrifera_M_contig107795.1657.1|Name=mRNA_M-pyrifera_M_contig107795.1657.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MDAAELAEVEALIKSVSFYRNKAKALKDMARRVNSGEWDGDIPNTLAGLK
DLKGVGPKIAALALQTAWGTEAADVSIGVDVHLHNVSNRLGWVDDGISDD
AARRQLESWLPIELWAEVS
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mRNA from alignment at M-pyrifera_M_contig107795:24..380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107795.1657.1 ID=mRNA_M-pyrifera_M_contig107795.1657.1|Name=mRNA_M-pyrifera_M_contig107795.1657.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig107795:24..380+ (Macrocystis pyrifera P11B4 male)
ATGGACGCCGCTGAACTGGCCGAAGTTGAAGCGCTTATTAAATCTGTTTC
CTTCTATCGAAATAAAGCCAAGGCCCTCAAGGACATGGCAAGACGCGTGA
ATAGTGGGGAGTGGGATGGGGATATTCCAAATACTCTTGCTGGTTTGAAA
GATTTGAAAGGAGTTGGACCTAAAATTGCTGCATTGGCACTTCAAACCGC
TTGGGGTACGGAGGCTGCCGATGTGAGCATTGGTGTTGATGTGCACCTTC
ACAACGTCTCAAACCGACTTGGATGGGTTGATGATGGAATCAGTGACGAT
GCAGCGCGACGTCAATTGGAATCGTGGCTCCCAATTGAACTGTGGGCAGA
AGTGAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107795:24..380+

>mRNA_M-pyrifera_M_contig107795.1657.1 ID=mRNA_M-pyrifera_M_contig107795.1657.1|Name=mRNA_M-pyrifera_M_contig107795.1657.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig107795:24..380+ (Macrocystis pyrifera P11B4 male)
ATGGACGCCGCTGAACTGGCCGAAGTTGAAGCGCTTATTAAATCTGTTTC
CTTCTATCGAAATAAAGCCAAGGCCCTCAAGGACATGGCAAGACGCGTGA
ATAGTGGGGAGTGGGATGGGGATATTCCAAATACTCTTGCTGGTTTGAAA
GATTTGAAAGGAGTTGGACCTAAAATTGCTGCATTGGCACTTCAAACCGC
TTGGGGTACGGAGGCTGCCGATGTGAGCATTGGTGTTGATGTGCACCTTC
ACAACGTCTCAAACCGACTTGGATGGGTTGATGATGGAATCAGTGACGAT
GCAGCGCGACGTCAATTGGAATCGTGGCTCCCAATTGAACTGTGGGCAGA
AGTGAGTATGGACGCCGCTGAACTGGCCGAAGTTGAAGCGCTTATTAAAT
CTGTTTCCTTCTATCGAAATAAAGCCAAGGCCCTCAAGGACATGGCAAGA
CGCGTGAATAGTGGGGAGTGGGATGGGGATATTCCAAATACTCTTGCTGG
TTTGAAAGATTTGAAAGGAGTTGGACCTAAAATTGCTGCATTGGCACTTC
AAACCGCTTGGGGTACGGAGGCTGCCGATGTGAGCATTGGTGTTGATGTG
CACCTTCACAACGTCTCAAACCGACTTGGATGGGTTGATGATGGAATCAG
TGACGATGCAGCGCGACGTCAATTGGAATCGTGGCTCCCAATTGAACTGT
GGGCAGAAGTGAGT
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