mRNA_M-pyrifera_M_contig107792.1656.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107792.1656.1
Unique NamemRNA_M-pyrifera_M_contig107792.1656.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107792.1656.1 vs. uniprot
Match: A0A2D5ZSJ9_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2D5ZSJ9_9BACT)

HSP 1 Score: 120 bits (301), Expect = 1.560e-28
Identity = 63/160 (39.38%), Postives = 89/160 (55.62%), Query Frame = 1
Query:    1 GVEWVHRRAAEKVTAEFSSVRGDWHQVPDPMPRVRCMTKVIAADTPAESLSELAIETTAMVGSHDRVALEDRPPGTAILTEDRPGRMEVETAAPSQQLLVTTERFHPGWNASIAGHATKAIRVNGDFLGCIVPTGTHHVAFRFEPAGQRYGAVISIIALL 480
            GVEWV R  AE+   E +     W ++P+P+ R+R +++      P +S       T+A V   + V L     G A L E+ PGRM V T A S+QLLV  E FHPGW A + G AT  +RVN DF+GC+V  G H +   F+P  +R G V+S + ++
Sbjct:  554 GVEWVSRGYAEEAGLELARNGSPWLRIPNPLARIRMVSEAQPRPDPPDSAPPPDPRTSAWV--EEEVVLGGGAVGQAELREESPGRMLVGTNAQSRQLLVVAESFHPGWTAEVDGRATAVLRVNRDFIGCVVEAGEHEIRLVFDPPSRRLGLVLSALGMV 711          
BLAST of mRNA_M-pyrifera_M_contig107792.1656.1 vs. uniprot
Match: A0A7V2Y010_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y010_9BACT)

HSP 1 Score: 118 bits (295), Expect = 1.000e-27
Identity = 54/146 (36.99%), Postives = 85/146 (58.22%), Query Frame = 1
Query:   67 DWHQVPDPMPRVRCMTKVIAADTPAESLSELAIETTAMVGSHDRVALEDRPPGTAILTEDRPGRMEVETAAPSQQLLVTTERFHPGWNASIAGHATKAIRVNGDFLGCIVPTGTHHVAFRFEP----AGQRYGAVISIIALLVTFG 492
            +W +VPDP+ RVRC+ K IA + PA  + E+ + +T +V   + + L D PPG      +RPGR+ +    PS+Q++  ++R+HPGW A++ GH     R+NGDF+GC+V  G H +   F+P     G+R       +AL+   G
Sbjct:  582 EWLEVPDPVSRVRCVAKAIAGNDPARDIGEIDLLSTVLVD--EPIELSDSPPGHVTAFTERPGRLAISVDVPSRQMVAISDRYHPGWWATVDGHPVPVHRINGDFMGCVVEAGRHTLCLEFDPDDLKTGKRLTLAGKALALIYFLG 725          
BLAST of mRNA_M-pyrifera_M_contig107792.1656.1 vs. uniprot
Match: UPI0019A35407 (Uncharacterized protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=UPI0019A35407)

HSP 1 Score: 108 bits (270), Expect = 1.900e-26
Identity = 57/171 (33.33%), Postives = 97/171 (56.73%), Query Frame = 1
Query:    1 GVEWVHRRAAEKVTAEFSSVRGDWHQVPDPMPRVRCMTKVIAADTPAESLSELAIETTAMVGSHDRVALED--RP--PGTAILTEDRPGRMEVETAAPSQQLLVTTERFHPGWNASIAGHATKAI-RVNGDFLGCIVPTGTHHVAFRFEPAGQRYGAVISIIALLVTFGGC 498
            GV WVH    +   ++  S + +W +VP+P+PRVR +T+ + + + A  L  +    T ++ +   + L++   P  PG A +  ++PG++E+ T AP++QLLV +E +HPGW     G A++ + R  GD+  C+V  G+H V FRF P     G  +++  LL+  G C
Sbjct:   18 GVRWVHSSQWKAPASQAQSPQEEWLEVPNPLPRVRLVTQSVVSASVARDLRGIDPARTVLLEAPVGLELKNVGNPVIPGQARIVSEQPGQIEIATNAPTRQLLVLSESWHPGWTTKQDGDASREVLRAYGDYQACLVEPGSHTVLFRFAPKSFEVGKRVTLFGLLLAAGMC 188          
BLAST of mRNA_M-pyrifera_M_contig107792.1656.1 vs. uniprot
Match: L0DJC8_SINAD (Bacterial membrane protein YfhO n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) TaxID=886293 RepID=L0DJC8_SINAD)

HSP 1 Score: 111 bits (278), Expect = 1.970e-25
Identity = 54/138 (39.13%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   70 WHQVPDPMPRVRCMTKVIAADTPAESLSELAIETTAMVGSHDRVALEDRPPGTAILTEDRPGRMEVETAAPSQQLLVTTERFHPGWNASIAGHATKAIRVNGDFLGCIVPTGTHHVAFRFEPAGQRYGAVISIIALLV 483
            W  +  P+PR R +T+    D P   +  + +  TA+V       L    PG A L  DRPG+++V T   S+QLLV +E  H GW   + G     +RV GDF+GC+VP G HHV FRF P+ QR G  +S++ L++
Sbjct:  581 WIPLFGPLPRARLVTQTQRTDNPDRDIETIDVAMTALVSRDLPQPLPPGTPGVADLVGDRPGKIDVMTTTESKQLLVLSESIHRGWRVKVDGKTQPVLRVYGDFMGCLVPQGRHHVQFRFLPSSQRAGLWLSVLGLVL 718          
BLAST of mRNA_M-pyrifera_M_contig107792.1656.1 vs. uniprot
Match: A0A1Q7GZ87_9BACT (Uncharacterized protein n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A1Q7GZ87_9BACT)

HSP 1 Score: 106 bits (265), Expect = 1.070e-23
Identity = 58/146 (39.73%), Postives = 79/146 (54.11%), Query Frame = 1
Query:   70 WHQVPDPMPRVRCMTKVIAADTPAESLSELAIETTAMVGSHDRVALEDRP-------PGTAILTEDRPGRMEVETAAPSQQLLVTTERFHPGWNASIAGHATKAIRVNGDFLGCIVPTGTHHVAFRFEPAGQRYGAVISIIALLVT 486
            W +V D MPR R ++ V ++D  AE +  + I           +AL DR        PG A +  DRPGR+ ++  AP  QLLV TERFH GW A        A+RV+GD++GC++  GTH V F F PA  R G  ++I  L +T
Sbjct:  529 WVRVEDTMPRARLISNVQSSDRIAEDIRHIDIA---------HMALTDRAVDGLSGEPGQARVVTDRPGRIVIQATAPGTQLLVLTERFHEGWRARDGEREYPALRVDGDYVGCVIDAGTHRVTFTFAPASARNGLWLTIAGLALT 665          
BLAST of mRNA_M-pyrifera_M_contig107792.1656.1 vs. uniprot
Match: UPI0019867926 (Uncharacterized protein n=1 Tax=Fuerstiella sp. TaxID=1936112 RepID=UPI0019867926)

HSP 1 Score: 106 bits (265), Expect = 1.110e-23
Identity = 61/174 (35.06%), Postives = 87/174 (50.00%), Query Frame = 1
Query:    1 GVEWV-----HRRAAEKVTAEFSSVRGDWHQVPDPMPRVRCMTKVIAADTPAESLSELAIETTAMVGSHDRVA-LEDRPPGTAILTEDRPGRMEVETAAPSQQLLVTTERFHPGWNASIAGHATKAIRVNGDFLGCIVPTGTHHVAFRFEPAGQRYGAVISIIALLVT--FGGC 498
            GV W+     H R A     + S     W  VP+P+PR R          P  ++ +L  E   +V     +    D  PG A +  DRPGR+E++T+A S +LLV +ERF  GWNA++ G     +R   DF+GC+ P G H + F F+PA    G +IS + LL+   F  C
Sbjct:  570 GVRWINSGGNHSRIAGLQPTDDSR----WLAVPNPLPRARFTVNTATIADPLAAVRKLQPEGFTVVDRDLEIPQTNDTAPGAATIVVDRPGRIEIQTSADSPRLLVLSERFSDGWNATVDGATVPIVRAEIDFMGCVAPVGDHMIRFTFDPASVHSGRLISTMTLLLLCLFAAC 739          
BLAST of mRNA_M-pyrifera_M_contig107792.1656.1 vs. uniprot
Match: A0A1N6DT31_9BACT (Membrane protein YfhO n=1 Tax=Singulisphaera sp. GP187 TaxID=1882752 RepID=A0A1N6DT31_9BACT)

HSP 1 Score: 105 bits (263), Expect = 2.050e-23
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   70 WHQVPDPMPRVRCMTKVIAADTPAESLSELAIETTAMVGSHDRVALEDRPPGTAILTEDRPGRMEVETAAPSQQLLVTTERFHPGWNASIAGHATKAIRVNGDFLGCIVPTGTHHVAFRFEPAGQRYGAVISIIALLV 483
            W  +  P+PR R +T+   +D P   +  + +  TA+VG    + L    PG A L  DRPG+++V T   S+QLLV +E  H GW   + G     +RV GDF+GC+VP G HHV FRF+ +  R G  +S + L++
Sbjct:  582 WIPLFGPLPRARLVTQTQRSDDPNRDIETIDVAITALVGRD--LPLPPATPGAADLVGDRPGKIDVMTTTESKQLLVLSETNHRGWRVKVDGKTQPILRVYGDFMGCVVPQGRHHVQFRFQSSSVRAGFWLSTLGLVL 717          
BLAST of mRNA_M-pyrifera_M_contig107792.1656.1 vs. uniprot
Match: A0A847YB98_9BACT (YfhO family protein n=1 Tax=Thermogutta sp. TaxID=1962930 RepID=A0A847YB98_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 3.830e-20
Identity = 50/141 (35.46%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   70 WHQVPDPMPRVRCMTKVIAADTPAESLSELAIETTAMVGSHDRVALEDRPPGTAILTEDRPGRMEVETAAPSQQLLVTTERFHPGWNASIAGHATKAIRVNGDFLGCIVPTGTHHVAFRFEPAGQRYGAVISIIALLVTFG 492
            W + PD +PR R + +V+ A      +  L  +  A+V     V +         + +DRPGRM V   A    LLV +E +H GW A++ G  ++ +RVNGDF+GC+VP G H V   F P    +G  IS  AL ++ G
Sbjct:  354 WEKSPDRLPRFRTVGRVVVASPTPAVIERLDPQRAALV--EKAVGVSPEAAARLGVLDDRPGRMAVAVQASGPLLLVVSEAYHSGWGAAVDGRESEVLRVNGDFMGCVVPPGRHRVILAFRPWSLIWGRGISFAALTLSAG 492          
BLAST of mRNA_M-pyrifera_M_contig107792.1656.1 vs. uniprot
Match: A0A3E0N804_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0N804_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 4.070e-19
Identity = 51/152 (33.55%), Postives = 82/152 (53.95%), Query Frame = 1
Query:   25 AAEKVTA-EFSSVRGDWHQVPDPMPRVRCMTKVIAADTPAESLSELAIETTAMVGSHDRVALEDRPPGTAILTEDRPGRMEVETAAPSQQLLVTTERFHPGWNASIAGHATKAIRVNGDFLGCIVPTGTHHVAFRFEPAGQRYGAVISIIAL 477
            + E+V+A   + V G +  +P P PR + +++   ++ PA  +  + +   A+V +   + LE  PPG   +  D+PGR+ + T+  + +LLVT E FH GW   + G   + +RVNGDFLG +VP GT  V   F P    +G  +S   L
Sbjct:  608 SVEEVSAPREADVAGPFVALPVPAPRFQLVSRAFQSERPAWDIRRIDVTRAALVATP--LELEGGPPGMVHVVADKPGRLWLVTSCVAPRLLVTNESFHAGWRVRVDGVDYEPLRVNGDFLGAVVPGGTRRVELEFAPVSLTHGLRMSACGL 757          
BLAST of mRNA_M-pyrifera_M_contig107792.1656.1 vs. uniprot
Match: A0A7Y5U5B8_9BACT (YfhO family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y5U5B8_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 3.530e-15
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  235 LTEDRPGRMEVETAAPSQQLLVTTERFHPGWNASIAGHATKAIRVNGDFLGCIVPTGTHHVAFRFEPAGQRYGAVISIIALLV 483
            L  DRPG++     AP  ++L  TERF  GW+A+I     + +RV  DFLGCIV  G H V  RF P    YG+++S I +++
Sbjct:   14 LVVDRPGQLIARVDAPGTRVLAFTERFDDGWSATIDDVPARTVRVEEDFLGCIVTAGVHRVDLRFMPRSFVYGSIVSAIGVVL 96          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107792.1656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D5ZSJ9_9BACT1.560e-2839.38Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A7V2Y010_9BACT1.000e-2736.99Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
UPI0019A354071.900e-2633.33Uncharacterized protein n=1 Tax=Cytophagales bacte... [more]
L0DJC8_SINAD1.970e-2539.13Bacterial membrane protein YfhO n=1 Tax=Singulisph... [more]
A0A1Q7GZ87_9BACT1.070e-2339.73Uncharacterized protein n=2 Tax=unclassified Acido... [more]
UPI00198679261.110e-2335.06Uncharacterized protein n=1 Tax=Fuerstiella sp. Ta... [more]
A0A1N6DT31_9BACT2.050e-2338.41Membrane protein YfhO n=1 Tax=Singulisphaera sp. G... [more]
A0A847YB98_9BACT3.830e-2035.46YfhO family protein n=1 Tax=Thermogutta sp. TaxID=... [more]
A0A3E0N804_9BACT4.070e-1933.55Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]
A0A7Y5U5B8_9BACT3.530e-1542.17YfhO family protein n=1 Tax=Acidobacteria bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107792contigM-pyrifera_M_contig107792:3..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.5
Seed ortholog evalue2.3e-23
Seed eggNOG ortholog886293.Sinac_4748
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Bacterial membrane protein, YfhO
EggNOG OGsCOG4485@1,COG4485@2
COG Functional cat.M
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.3406508-CDS-M-pyrifera_M_contig107792:2..5001622815587.3406508-CDS-M-pyrifera_M_contig107792:2..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107792 3..500 +
1692277476.2075143-CDS-M-pyrifera_M_contig107792:2..5001692277476.2075143-CDS-M-pyrifera_M_contig107792:2..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107792 3..500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107792.1656.1prot_M-pyrifera_M_contig107792.1656.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107792 3..500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107792.1656.1

>prot_M-pyrifera_M_contig107792.1656.1 ID=prot_M-pyrifera_M_contig107792.1656.1|Name=mRNA_M-pyrifera_M_contig107792.1656.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
GVEWVHRRAAEKVTAEFSSVRGDWHQVPDPMPRVRCMTKVIAADTPAESL
SELAIETTAMVGSHDRVALEDRPPGTAILTEDRPGRMEVETAAPSQQLLV
TTERFHPGWNASIAGHATKAIRVNGDFLGCIVPTGTHHVAFRFEPAGQRY
GAVISIIALLVTFGGC
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mRNA from alignment at M-pyrifera_M_contig107792:3..500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107792.1656.1 ID=mRNA_M-pyrifera_M_contig107792.1656.1|Name=mRNA_M-pyrifera_M_contig107792.1656.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig107792:3..500+ (Macrocystis pyrifera P11B4 male)
GGCGTCGAATGGGTCCACCGTCGGGCGGCTGAAAAGGTCACCGCAGAGTT CAGCTCCGTACGCGGTGACTGGCATCAAGTTCCCGATCCGATGCCGCGTG TTCGTTGCATGACGAAGGTCATTGCGGCCGATACTCCAGCCGAATCGCTG TCGGAGCTTGCGATTGAAACAACCGCCATGGTTGGTTCGCATGATCGGGT CGCACTCGAAGATCGCCCCCCTGGCACGGCGATACTCACCGAAGACCGTC CAGGGCGAATGGAAGTTGAAACAGCCGCCCCGTCGCAACAGCTCTTGGTT ACCACTGAACGGTTCCATCCCGGGTGGAACGCCTCGATCGCAGGTCATGC AACGAAAGCGATCCGTGTGAATGGCGACTTCCTCGGTTGCATCGTCCCGA CCGGAACGCACCATGTCGCGTTTCGATTTGAACCCGCCGGCCAACGTTAC GGTGCAGTGATTTCGATCATCGCCCTGTTGGTCACGTTCGGCGGATGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107792:3..500+

>mRNA_M-pyrifera_M_contig107792.1656.1 ID=mRNA_M-pyrifera_M_contig107792.1656.1|Name=mRNA_M-pyrifera_M_contig107792.1656.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig107792:3..500+ (Macrocystis pyrifera P11B4 male)
GGCGTCGAATGGGTCCACCGTCGGGCGGCTGAAAAGGTCACCGCAGAGTT
CAGCTCCGTACGCGGTGACTGGCATCAAGTTCCCGATCCGATGCCGCGTG
TTCGTTGCATGACGAAGGTCATTGCGGCCGATACTCCAGCCGAATCGCTG
TCGGAGCTTGCGATTGAAACAACCGCCATGGTTGGTTCGCATGATCGGGT
CGCACTCGAAGATCGCCCCCCTGGCACGGCGATACTCACCGAAGACCGTC
CAGGGCGAATGGAAGTTGAAACAGCCGCCCCGTCGCAACAGCTCTTGGTT
ACCACTGAACGGTTCCATCCCGGGTGGAACGCCTCGATCGCAGGTCATGC
AACGAAAGCGATCCGTGTGAATGGCGACTTCCTCGGTTGCATCGTCCCGA
CCGGAACGCACCATGTCGCGTTTCGATTTGAACCCGCCGGCCAACGTTAC
GGTGCAGTGATTTCGATCATCGCCCTGTTGGTCACGTTCGGCGGATGCGG
CGTCGAATGGGTCCACCGTCGGGCGGCTGAAAAGGTCACCGCAGAGTTCA
GCTCCGTACGCGGTGACTGGCATCAAGTTCCCGATCCGATGCCGCGTGTT
CGTTGCATGACGAAGGTCATTGCGGCCGATACTCCAGCCGAATCGCTGTC
GGAGCTTGCGATTGAAACAACCGCCATGGTTGGTTCGCATGATCGGGTCG
CACTCGAAGATCGCCCCCCTGGCACGGCGATACTCACCGAAGACCGTCCA
GGGCGAATGGAAGTTGAAACAGCCGCCCCGTCGCAACAGCTCTTGGTTAC
CACTGAACGGTTCCATCCCGGGTGGAACGCCTCGATCGCAGGTCATGCAA
CGAAAGCGATCCGTGTGAATGGCGACTTCCTCGGTTGCATCGTCCCGACC
GGAACGCACCATGTCGCGTTTCGATTTGAACCCGCCGGCCAACGTTACGG
TGCAGTGATTTCGATCATCGCCCTGTTGGTCACGTTCGGCGGATGC
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