mRNA_M-pyrifera_M_contig107787.1655.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107787.1655.1
Unique NamemRNA_M-pyrifera_M_contig107787.1655.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107787.1655.1 vs. uniprot
Match: A0A2E7K8L2_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K8L2_9PLAN)

HSP 1 Score: 215 bits (547), Expect = 1.240e-70
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 1 
Query:    1 MLSRLLRLSGSILHGPSGLCAFLFAFLTGLLLLLNHLIFVDAEGVTLIPANKNIRGMGPVTRELIELTQDIDWAKNPEKKKRVFELNSRLTDPERQNKPSIDPVPYPVQVD 333
            MLSRLLRLSGSILHGPSGLCAFLFAFLTGLLLLLNHLIFVDAEGVTLIPANKNIRGMGPVTRELIELTQDIDWAKNPEKKKRVFELNSRLTDPERQNKP IDPVPYPVQVD
Sbjct:    1 MLSRLLRLSGSILHGPSGLCAFLFAFLTGLLLLLNHLIFVDAEGVTLIPANKNIRGMGPVTRELIELTQDIDWAKNPEKKKRVFELNSRLTDPERQNKPYIDPVPYPVQVD 111
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BLAST of mRNA_M-pyrifera_M_contig107787.1655.1 vs. uniprot
Match: A0A5A8BJ46_9PLAN (Uncharacterized protein n=3 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8BJ46_9PLAN)

HSP 1 Score: 155 bits (393), Expect = 1.420e-47
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:   97 LLNHLIFVDAEGVTLIPANKNIRGMGPVTRELIELTQDIDWAKNPEKKKRVFELNSRLTDPERQNKPSIDPVPYPVQVD 333
            +LNHLIFVDAEGVTLIPANKNIRGMGPVTRELIELTQDI+WAKNPEKKKRVFELNSRLTDPERQNKP IDPVPYPVQVD
Sbjct:    1 MLNHLIFVDAEGVTLIPANKNIRGMGPVTRELIELTQDINWAKNPEKKKRVFELNSRLTDPERQNKPYIDPVPYPVQVD 79
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BLAST of mRNA_M-pyrifera_M_contig107787.1655.1 vs. uniprot
Match: A0A2E2C750_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C750_9PLAN)

HSP 1 Score: 72.0 bits (175), Expect = 4.910e-14
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 MLSRLLRLSGSILHGPSGLCAFLFAFLTGLLLLLNHLIFVDAEGVTLIPANKNIRGMGPVTRELIELTQDIDWAKNPEKKKRVFELNSRL 270
            MLSR+  L GS+L GP  L   LFAFL  +L L +  I +D EGV L P NKN++ M    REL+ L+    W K+PE K RV EL++ +
Sbjct:    1 MLSRVCLLLGSLLSGPITLSLGLFAFLIAILFLTHQEIQIDVEGVPLTPMNKNMQPMSAEMRELLYLSGQTGWKKDPETKARVMELSNSI 90
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BLAST of mRNA_M-pyrifera_M_contig107787.1655.1 vs. uniprot
Match: A0A2E2BWG2_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BWG2_9PLAN)

HSP 1 Score: 62.8 bits (151), Expect = 3.330e-10
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   31 SILHGPSGLCAFLFAFLTGLLLLLNHLIFVDAEGVTLIPANKNIRGMGPVTRELIELTQDIDWAKNPEKKKRVFELNSRLT 273
            S+L  P+GLC  L  F +G LLL NHLI VDA G  L   +  +    P TRELIE+T +++W  +P+   RV EL   LT
Sbjct:   11 SLLLSPAGLCMILVVFFSGSLLLCNHLIHVDASGRPLARKHTVLENH-PTTRELIEVTSELNWQNDPQLLSRVDELCETLT 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107787.1655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7K8L2_9PLAN1.240e-7099.10Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A5A8BJ46_9PLAN1.420e-4796.20Uncharacterized protein n=3 Tax=Gimesia chilikensi... [more]
A0A2E2C750_9PLAN4.910e-1446.67Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A2E2BWG2_9PLAN3.330e-1045.68Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107787contigM-pyrifera_M_contig107787:214..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size336
Cds size336
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.3001451-CDS-M-pyrifera_M_contig107787:213..5491622815587.3001451-CDS-M-pyrifera_M_contig107787:213..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107787 214..549 -
1692277476.1970334-CDS-M-pyrifera_M_contig107787:213..5491692277476.1970334-CDS-M-pyrifera_M_contig107787:213..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107787 214..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107787.1655.1prot_M-pyrifera_M_contig107787.1655.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107787 214..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107787.1655.1

>prot_M-pyrifera_M_contig107787.1655.1 ID=prot_M-pyrifera_M_contig107787.1655.1|Name=mRNA_M-pyrifera_M_contig107787.1655.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MLSRLLRLSGSILHGPSGLCAFLFAFLTGLLLLLNHLIFVDAEGVTLIPA
NKNIRGMGPVTRELIELTQDIDWAKNPEKKKRVFELNSRLTDPERQNKPS
IDPVPYPVQVD*
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mRNA from alignment at M-pyrifera_M_contig107787:214..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107787.1655.1 ID=mRNA_M-pyrifera_M_contig107787.1655.1|Name=mRNA_M-pyrifera_M_contig107787.1655.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig107787:214..549- (Macrocystis pyrifera P11B4 male)
ATGCTTTCGCGTTTGTTACGTTTGTCAGGGTCGATTTTACACGGACCATC
AGGTTTATGCGCGTTTTTATTCGCGTTTCTGACGGGTCTGCTGCTGTTGT
TAAATCACCTGATTTTTGTCGATGCAGAAGGGGTCACGCTCATACCGGCG
AATAAGAACATTCGGGGAATGGGGCCGGTGACACGCGAGCTGATCGAGCT
GACCCAGGATATTGACTGGGCTAAAAATCCGGAAAAGAAGAAACGCGTGT
TTGAGTTAAACTCCCGTCTGACGGATCCGGAGCGACAGAACAAACCTTCT
ATCGATCCGGTCCCCTACCCGGTTCAAGTCGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107787:214..549-

>mRNA_M-pyrifera_M_contig107787.1655.1 ID=mRNA_M-pyrifera_M_contig107787.1655.1|Name=mRNA_M-pyrifera_M_contig107787.1655.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig107787:214..549- (Macrocystis pyrifera P11B4 male)
ATGCTTTCGCGTTTGTTACGTTTGTCAGGGTCGATTTTACACGGACCATC
AGGTTTATGCGCGTTTTTATTCGCGTTTCTGACGGGTCTGCTGCTGTTGT
TAAATCACCTGATTTTTGTCGATGCAGAAGGGGTCACGCTCATACCGGCG
AATAAGAACATTCGGGGAATGGGGCCGGTGACACGCGAGCTGATCGAGCT
GACCCAGGATATTGACTGGGCTAAAAATCCGGAAAAGAAGAAACGCGTGT
TTGAGTTAAACTCCCGTCTGACGGATCCGGAGCGACAGAACAAACCTTCT
ATCGATCCGGTCCCCTACCCGGTTCAAGTCGACTGAATGCTTTCGCGTTT
GTTACGTTTGTCAGGGTCGATTTTACACGGACCATCAGGTTTATGCGCGT
TTTTATTCGCGTTTCTGACGGGTCTGCTGCTGTTGTTAAATCACCTGATT
TTTGTCGATGCAGAAGGGGTCACGCTCATACCGGCGAATAAGAACATTCG
GGGAATGGGGCCGGTGACACGCGAGCTGATCGAGCTGACCCAGGATATTG
ACTGGGCTAAAAATCCGGAAAAGAAGAAACGCGTGTTTGAGTTAAACTCC
CGTCTGACGGATCCGGAGCGACAGAACAAACCTTCTATCGATCCGGTCCC
CTACCCGGTTCAAGTCGACTGA
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