mRNA_M-pyrifera_M_contig107773.1653.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107773.1653.1
Unique NamemRNA_M-pyrifera_M_contig107773.1653.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107773.1653.1 vs. uniprot
Match: A0A6B1B3G9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B3G9_9ACTN)

HSP 1 Score: 249 bits (635), Expect = 1.770e-79
Identity = 120/156 (76.92%), Postives = 136/156 (87.18%), Query Frame = 1
Query:    1 KQRDDVGYDLADYYGRVETQLATMEQELDPLVETGFTDDAEVVVVAFGTPGKFVRYCVQELRAEGVRVGFVRPISLLPFPSDALRAAVAGSRGVAVYENSAGQLVDDVRLAVLGDAPVDFIGGLTMDASAFGIGPDIQIPVIKERILAACERAGYD 468
            KQRDDVGYDLADYY RVE  L+ ME +  PLVETGF DDAEVVVVAFGTPGKFVRYCVQELRAEGV+VGFVRPISL PFP++AL+ A    RGVAVYEN AGQ++DDVRLAVLG  PV+FIGGLTMD+SAFGIGPD+Q+P++K+RI+ AC RAG D
Sbjct:  215 KQRDDVGYDLADYYARVEVDLSAMETDFAPLVETGFVDDAEVVVVAFGTPGKFVRYCVQELRAEGVKVGFVRPISLYPFPTEALQDATRAVRGVAVYENCAGQMIDDVRLAVLGRVPVEFIGGLTMDSSAFGIGPDLQVPILKQRIVDACRRAGCD 370          
BLAST of mRNA_M-pyrifera_M_contig107773.1653.1 vs. uniprot
Match: A0A538DET5_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DET5_9ACTN)

HSP 1 Score: 194 bits (493), Expect = 2.740e-58
Identity = 91/154 (59.09%), Postives = 120/154 (77.92%), Query Frame = 1
Query:    1 KQRDDVGYDLADYYGRVETQLATMEQELDPLVETGFTDDAEVVVVAFGTPGKFVRYCVQELRAEGVRVGFVRPISLLPFPSDALRAAVAGSRGVAVYENSAGQLVDDVRLAVLGDAPVDFIGGLTMDASAFGIGPDIQIPVIKERILAACERAG 462
            KQRDDVGYDL+DYY R   + A M   ++P+++ G+ DDAEVVVVAFGT GK++RY V ++RA+G+RVG+ RPI+L PFPS AL  A AG+R +AVYEN+ GQ+VDDVRLAVLG  PVDFIGGL++D+S FGI PD  + +++ +I A  E +G
Sbjct:  206 KQRDDVGYDLSDYYLRCAAKTAAMVAGVEPMIDIGYVDDAEVVVVAFGTAGKYIRYTVAQMRADGLRVGYARPITLFPFPSAALVQATAGARRIAVYENNMGQMVDDVRLAVLGRTPVDFIGGLSLDSSGFGIAPDYNVDILRSKITAVMEASG 359          
BLAST of mRNA_M-pyrifera_M_contig107773.1653.1 vs. uniprot
Match: A0A6J7ARA4_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7ARA4_9ZZZZ)

HSP 1 Score: 181 bits (459), Expect = 4.890e-55
Identity = 91/157 (57.96%), Postives = 114/157 (72.61%), Query Frame = 1
Query:    1 KQRDDVGYDLADYYGRVETQLATMEQELDPLVETGFTDDAEVVVVAFGTPGKFVRYCVQELRAEGVRVGFVRPISLLPFPSDALRAAVAGSRGVAVYENSAGQLVDDVRLAVLGDAPVDFIGGLTMDASAFGIGPDIQIPVIKERILAACERAGYDP 471
            KQRD+VGYDL+DYY R   +   M + LD LV+ G  DDA++VVVAFGT GK+VRY V +LRAEG RVG+VRPISL PFP  ALR A  G++ VAVYEN+ GQ++DDVRL++ G  PV FIGGL++D+S FGI PD  + V++ RI A     G  P
Sbjct:   52 KQRDNVGYDLSDYYMRAAAKTTAMIEGLDRLVDIGHCDDADLVVVAFGTAGKYVRYAVDQLRAEGHRVGYVRPISLFPFPDAALRDAATGAKLVAVYENNQGQMIDDVRLSLEGAVPVRFIGGLSLDSSGFGIAPDFDVEVLRRRIDAVLTDLGGTP 208          
BLAST of mRNA_M-pyrifera_M_contig107773.1653.1 vs. uniprot
Match: A0A6I2YGQ8_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I2YGQ8_9ACTN)

HSP 1 Score: 181 bits (459), Expect = 3.730e-53
Identity = 91/157 (57.96%), Postives = 114/157 (72.61%), Query Frame = 1
Query:    1 KQRDDVGYDLADYYGRVETQLATMEQELDPLVETGFTDDAEVVVVAFGTPGKFVRYCVQELRAEGVRVGFVRPISLLPFPSDALRAAVAGSRGVAVYENSAGQLVDDVRLAVLGDAPVDFIGGLTMDASAFGIGPDIQIPVIKERILAACERAGYDP 471
            KQRD+VGYDL+DYY R   +   M + LD LV+ G  DDA++VVVAFGT GK+VRY V +LRAEG RVG+VRPISL PFP  ALR A  G++ VAVYEN+ GQ++DDVRL++ G  PV FIGGL++D+S FGI PD  + V++ RI A     G  P
Sbjct:  206 KQRDNVGYDLSDYYMRAAAKTTAMIEGLDRLVDIGHCDDADLVVVAFGTAGKYVRYAVDQLRAEGHRVGYVRPISLFPFPDAALRDAATGAKLVAVYENNQGQMIDDVRLSLEGAVPVRFIGGLSLDSSGFGIAPDFDVEVLRRRIDAVLTDLGGTP 362          
BLAST of mRNA_M-pyrifera_M_contig107773.1653.1 vs. uniprot
Match: UPI001F362E8F (hypothetical protein n=1 Tax=Yinghuangia sp. KLBMP8922 TaxID=2908204 RepID=UPI001F362E8F)

HSP 1 Score: 180 bits (456), Expect = 2.020e-52
Identity = 92/151 (60.93%), Postives = 113/151 (74.83%), Query Frame = 1
Query:    7 RDDVGYDLADYYGRVETQLATMEQELDPLVETGFTDDAEVVVVAFGTPGKFVRYCVQELRAEGVRVGFVRPISLLPFPSDALRAAVAGSRGVAVYENSAGQLVDDVRLAVLGDAPVDFIGGLTMDASAFGIGPDIQIPVIKERILAACERA 459
            R D GYDLA++Y R    +  M  E  P  ET F +DAEVVVVA+GTPG +VR  V+ELRAEG RVG+VRPI+L+PFPS+ + AA AG R VAVYEN+ GQ++DDVRLAVLG APV FIGGL++DAS FGI PD+ + V+K RI A  + A
Sbjct:  224 RADAGYDLAEFYHRHVAVMERMVAEEPPRAETEFVEDAEVVVVAYGTPGAYVRQAVRELRAEGRRVGYVRPITLVPFPSEIVAAAAAGGRTVAVYENNQGQMLDDVRLAVLGAAPVRFIGGLSLDASGFGIAPDLDVAVLKARIAAVHDAA 374          
BLAST of mRNA_M-pyrifera_M_contig107773.1653.1 vs. uniprot
Match: A0A1T3NQA1_9ACTN (Uncharacterized protein n=1 Tax=Embleya scabrispora TaxID=159449 RepID=A0A1T3NQA1_9ACTN)

HSP 1 Score: 175 bits (443), Expect = 1.490e-50
Identity = 91/157 (57.96%), Postives = 112/157 (71.34%), Query Frame = 1
Query:    7 RDDVGYDLADYYGRVETQLATMEQELDPLVETGFTDDAEVVVVAFGTPGKFVRYCVQELRAEGVRVGFVRPISLLPFPSDALRAAVAGSRGVAVYENSAGQLVDDVRLAVLGDAPVDFIGGLTMDASAFGIGPDIQIPVIKERILAACERAGYDPSK 477
            R D GYDLA++Y R    L  M  E +P  ETGF  DAEVVV+A+GTP  +VR  V +LRA G RVG+VRPI+L+PFPSD +RAA A +R VAVYENS GQ+VDDVRLAVLG APV FIG L++D S FGI PD+ +  ++ R+ A  E A   PS+
Sbjct:  226 RADAGYDLAEFYVRRGAALERMVAETEPRAETGFLADAEVVVIAYGTPALYVRQAVSDLRALGRRVGYVRPITLVPFPSDIVRAAAADARVVAVYENSGGQMVDDVRLAVLGAAPVRFIGRLSLDPSGFGIAPDLDVGAMRHRVEALFEPAHETPSR 382          
BLAST of mRNA_M-pyrifera_M_contig107773.1653.1 vs. uniprot
Match: A0A7Y5XEM7_9ACTN (Uncharacterized protein n=2 Tax=Streptomycetaceae bacterium TaxID=2021369 RepID=A0A7Y5XEM7_9ACTN)

HSP 1 Score: 174 bits (441), Expect = 2.460e-50
Identity = 84/151 (55.63%), Postives = 112/151 (74.17%), Query Frame = 1
Query:    7 RDDVGYDLADYYGRVETQLATMEQELDPLVETGFTDDAEVVVVAFGTPGKFVRYCVQELRAEGVRVGFVRPISLLPFPSDALRAAVAGSRGVAVYENSAGQLVDDVRLAVLGDAPVDFIGGLTMDASAFGIGPDIQIPVIKERILAACERA 459
            R D GYDLA++Y R    +  M  E  PL E  FTDDA+VVV+A+GTPG ++R  V+ELRAEG R+G++RPI+L+PFP++A+  A   +R VAVYEN+ GQ++DDVRLAVLG APV FIGGL++D S FGI PD+ + V++ RI A  + A
Sbjct:  213 RADAGYDLAEFYHRHVDAMERMVAEETPLAEDAFTDDADVVVIAYGTPGTYIRQAVRELRAEGRRIGYIRPITLVPFPAEAVAEAARRARAVAVYENNRGQMLDDVRLAVLGAAPVHFIGGLSLDPSGFGIAPDLDVAVLRRRITAVHDAA 363          
BLAST of mRNA_M-pyrifera_M_contig107773.1653.1 vs. uniprot
Match: UPI0003722C55 (hypothetical protein n=1 Tax=Embleya scabrispora TaxID=159449 RepID=UPI0003722C55)

HSP 1 Score: 174 bits (441), Expect = 3.830e-50
Identity = 88/152 (57.89%), Postives = 114/152 (75.00%), Query Frame = 1
Query:    7 RDDVGYDLADYYGRVETQLATMEQELDPLVETGFTDDAEVVVVAFGTPGKFVRYCVQELRAEGVRVGFVRPISLLPFPSDALRAAVAGSRGVAVYENSAGQLVDDVRLAVLGDAPVDFIGGLTMDASAFGIGPDIQIPVIKERILAACERAG 462
            R D  YDLA++Y R    +  M  E +P  ETGF  DAEVVVVA+GTP  +VR  V++LR +G+RVG+VRPI+L+PFPS+ +RAA +G+R VAVYENS GQ+VDDVRLAVLG APV FIG L++D+S FGI PD+++  ++ RI AA   AG
Sbjct:  218 RTDASYDLAEFYTRHGGAMERMVAETEPRAETGFLADAEVVVVAYGTPALYVRQAVRDLREQGLRVGYVRPITLVPFPSEIVRAAASGARVVAVYENSGGQMVDDVRLAVLGAAPVRFIGRLSLDSSGFGIAPDLEVGAMRRRIEAAFGPAG 369          
BLAST of mRNA_M-pyrifera_M_contig107773.1653.1 vs. uniprot
Match: A0A538IN34_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538IN34_9ACTN)

HSP 1 Score: 172 bits (435), Expect = 1.250e-49
Identity = 83/146 (56.85%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 KQRDDVGYDLADYYGRVETQLATMEQELDPLVETGFTDDAEVVVVAFGTPGKFVRYCVQELRAEGVRVGFVRPISLLPFPSDALRAAVAGSRGVAVYENSAGQLVDDVRLAVLGDAPVDFIGGLTMDASAFGIGPDIQIPVIKERI 438
            K++D  GY+LA +Y       A M   + PL + GF D AEVVVVAFGTPG++VR  V+ LRA+GV VG+VRP++L PFPS+A+  A  G+R VAVYEN+ GQ++DDVRLAVLG +PVDFIGGL++D+S FGI PD+ + V++ RI
Sbjct:  205 KRKDQSGYNLATHYASCAAATAEMVAGVTPLADVGFIDHAEVVVVAFGTPGRYVRAAVRALRADGVPVGYVRPVTLFPFPSEAVARACEGARRVAVYENNQGQMIDDVRLAVLGRSPVDFIGGLSLDSSGFGIAPDLDVQVLRARI 350          
BLAST of mRNA_M-pyrifera_M_contig107773.1653.1 vs. uniprot
Match: A0A537VU34_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537VU34_9ACTN)

HSP 1 Score: 168 bits (426), Expect = 3.060e-48
Identity = 86/155 (55.48%), Postives = 112/155 (72.26%), Query Frame = 1
Query:    1 KQRDDVGYDLADYYGRVETQLATMEQELDPLVETGFTDDAEVVVVAFGTPGKFVRYCVQELRAEGVRVGFVRPISLLPFPSDALRAAVAGSRGVAVYENSAGQLVDDVRLAVLGDAPVDFIGGLTMDASAFGIGPDIQIPVIK---ERILAACER 456
            K+RD  GY+LAD+Y       A M  E+ PLVE+ F + AE+V VAFGTP K+VR  V+ +R +G+ VGFVRPI+L PFPS A+  A  G+R VAVYEN+ GQ++DDVRLAVLG APV F+GGL++D+S FGI PD+ + VI+   ER+L   ER
Sbjct:  206 KRRDGEGYNLADHYTACAEITARMAAEVTPLVESAFLEGAELVAVAFGTPAKYVRAAVRAMRDDGLPVGFVRPITLFPFPSAAIARACDGARAVAVYENNQGQMIDDVRLAVLGRAPVHFVGGLSLDSSGFGIAPDLDVGVIRGRLERVLREAER 360          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107773.1653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1B3G9_9ACTN1.770e-7976.92Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A538DET5_9ACTN2.740e-5859.09Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A6J7ARA4_9ZZZZ4.890e-5557.96Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A6I2YGQ8_9ACTN3.730e-5357.96Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
UPI001F362E8F2.020e-5260.93hypothetical protein n=1 Tax=Yinghuangia sp. KLBMP... [more]
A0A1T3NQA1_9ACTN1.490e-5057.96Uncharacterized protein n=1 Tax=Embleya scabrispor... [more]
A0A7Y5XEM7_9ACTN2.460e-5055.63Uncharacterized protein n=2 Tax=Streptomycetaceae ... [more]
UPI0003722C553.830e-5057.89hypothetical protein n=1 Tax=Embleya scabrispora T... [more]
A0A538IN34_9ACTN1.250e-4956.85Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A537VU34_9ACTN3.060e-4855.48Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107773contigM-pyrifera_M_contig107773:3..485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score177.9
Seed ortholog evalue3.7e-42
Seed eggNOG ortholog1123320.KB889686_gene725
Preferred namevorB
KEGG rclassRC00004,RC02742,RC02833,RC02856
KEGG koko:K00174,ko:K00186
KEGG ReactionR01196,R01197,R07160,R08566,R08567
KEGG Pathwayko00010,ko00020,ko00280,ko00620,ko00650,ko00720,ko01100,ko01120,ko01130,ko01200,map00010,map00020,map00280,map00620,map00650,map00720,map01100,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00173,M00620
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ferredoxin oxidoreductase
EggNOG OGs2GKXV@201174,COG0674@1,COG0674@2
EC1.2.7.11,1.2.7.3,1.2.7.7
COG Functional cat.C
BiGG ReactioniAF987.Gmet_1307
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Exons1
Model size483
Cds size483
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.2245843-CDS-M-pyrifera_M_contig107773:2..4851622815587.2245843-CDS-M-pyrifera_M_contig107773:2..485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107773 3..485 +
1692277476.1651347-CDS-M-pyrifera_M_contig107773:2..4851692277476.1651347-CDS-M-pyrifera_M_contig107773:2..485Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107773 3..485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107773.1653.1prot_M-pyrifera_M_contig107773.1653.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107773 3..485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107773.1653.1

>prot_M-pyrifera_M_contig107773.1653.1 ID=prot_M-pyrifera_M_contig107773.1653.1|Name=mRNA_M-pyrifera_M_contig107773.1653.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
KQRDDVGYDLADYYGRVETQLATMEQELDPLVETGFTDDAEVVVVAFGTP
GKFVRYCVQELRAEGVRVGFVRPISLLPFPSDALRAAVAGSRGVAVYENS
AGQLVDDVRLAVLGDAPVDFIGGLTMDASAFGIGPDIQIPVIKERILAAC
ERAGYDPSKD*
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mRNA from alignment at M-pyrifera_M_contig107773:3..485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107773.1653.1 ID=mRNA_M-pyrifera_M_contig107773.1653.1|Name=mRNA_M-pyrifera_M_contig107773.1653.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig107773:3..485+ (Macrocystis pyrifera P11B4 male)
AAGCAGCGAGACGACGTCGGCTACGACCTCGCCGACTACTACGGCCGCGT CGAGACGCAGCTCGCAACGATGGAGCAGGAGCTCGACCCCTTGGTCGAGA CCGGCTTCACCGACGACGCCGAAGTGGTGGTCGTCGCCTTCGGTACGCCC GGCAAGTTCGTGCGCTATTGCGTGCAGGAGCTCCGAGCCGAAGGGGTACG CGTCGGCTTCGTTCGCCCGATCTCGTTGTTGCCCTTCCCCAGCGACGCGC TTCGAGCGGCGGTCGCCGGCAGCCGAGGGGTGGCCGTGTACGAGAACAGT GCGGGACAGTTGGTCGACGATGTGCGCCTGGCGGTACTGGGCGATGCGCC CGTCGACTTCATCGGCGGGTTGACGATGGACGCGTCGGCGTTCGGCATCG GCCCCGACATCCAGATCCCGGTCATCAAGGAGCGGATTCTGGCCGCCTGT GAACGAGCGGGCTACGACCCGAGCAAGGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107773:3..485+

>mRNA_M-pyrifera_M_contig107773.1653.1 ID=mRNA_M-pyrifera_M_contig107773.1653.1|Name=mRNA_M-pyrifera_M_contig107773.1653.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig107773:3..485+ (Macrocystis pyrifera P11B4 male)
AAGCAGCGAGACGACGTCGGCTACGACCTCGCCGACTACTACGGCCGCGT
CGAGACGCAGCTCGCAACGATGGAGCAGGAGCTCGACCCCTTGGTCGAGA
CCGGCTTCACCGACGACGCCGAAGTGGTGGTCGTCGCCTTCGGTACGCCC
GGCAAGTTCGTGCGCTATTGCGTGCAGGAGCTCCGAGCCGAAGGGGTACG
CGTCGGCTTCGTTCGCCCGATCTCGTTGTTGCCCTTCCCCAGCGACGCGC
TTCGAGCGGCGGTCGCCGGCAGCCGAGGGGTGGCCGTGTACGAGAACAGT
GCGGGACAGTTGGTCGACGATGTGCGCCTGGCGGTACTGGGCGATGCGCC
CGTCGACTTCATCGGCGGGTTGACGATGGACGCGTCGGCGTTCGGCATCG
GCCCCGACATCCAGATCCCGGTCATCAAGGAGCGGATTCTGGCCGCCTGT
GAACGAGCGGGCTACGACCCGAGCAAGGACTGAAAGCAGCGAGACGACGT
CGGCTACGACCTCGCCGACTACTACGGCCGCGTCGAGACGCAGCTCGCAA
CGATGGAGCAGGAGCTCGACCCCTTGGTCGAGACCGGCTTCACCGACGAC
GCCGAAGTGGTGGTCGTCGCCTTCGGTACGCCCGGCAAGTTCGTGCGCTA
TTGCGTGCAGGAGCTCCGAGCCGAAGGGGTACGCGTCGGCTTCGTTCGCC
CGATCTCGTTGTTGCCCTTCCCCAGCGACGCGCTTCGAGCGGCGGTCGCC
GGCAGCCGAGGGGTGGCCGTGTACGAGAACAGTGCGGGACAGTTGGTCGA
CGATGTGCGCCTGGCGGTACTGGGCGATGCGCCCGTCGACTTCATCGGCG
GGTTGACGATGGACGCGTCGGCGTTCGGCATCGGCCCCGACATCCAGATC
CCGGTCATCAAGGAGCGGATTCTGGCCGCCTGTGAACGAGCGGGCTACGA
CCCGAGCAAGGACTGA
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