mRNA_M-pyrifera_M_contig107744.1644.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107744.1644.1
Unique NamemRNA_M-pyrifera_M_contig107744.1644.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107744.1644.1 vs. uniprot
Match: B7GC91_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GC91_PHATC)

HSP 1 Score: 142 bits (358), Expect = 4.150e-37
Identity = 70/127 (55.12%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 GADEQLAGYGRHRNAWRKRGEDGIKLELDKDTARLWIRNLGRDDRAISSLGKESRLPYLDCDLMEFLSALDTDMICDFEEPAGVGDKRILRELARR-LRLTQASAFPKRALQFGSRISRLTNSKNGG 378
            GADE + GYGRHR AW+  G + ++ ELD D  RLW RNLGRDDR +S  G+E+R PYLD  +++FLS LD D++CDF+ P G GDKRILR LA + L L  AS   KRA+QFGSRI+ +++ +  G
Sbjct:  447 GADELMGGYGRHRQAWKDGGNEQLRRELDLDLTRLWYRNLGRDDRVLSDTGREARFPYLDTAVVQFLSRLDLDVVCDFKRPPGEGDKRILRVLAAQMLGLEAASTAVKRAIQFGSRIAHVSDKRRFG 573          
BLAST of mRNA_M-pyrifera_M_contig107744.1644.1 vs. uniprot
Match: A0A7S2WG35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WG35_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.200e-35
Identity = 64/128 (50.00%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 GADEQLAGYGRHRNAWRKRGEDGIKLELDKDTARLWIRNLGRDDRAISSLGKESRLPYLDCDLMEFLSALDTDMICDFEEPAGVGDKRILRELARRLRLTQASAFPKRALQFGSRISRLTNSKNGGHV 384
            GADEQLAGY RHR  W+++G  G+  EL+K+  R+  RNLGRDDR IS  G+E+R P+LD  ++ FL+ L  ++I D  +P G+GDK ILR  AR+  L+++S+  KRA+QFGS+I++L+N  + G V
Sbjct:  191 GADEQLAGYSRHRGVWQRQGNQGLAQELEKEMGRIATRNLGRDDRCISDWGREARFPFLDELVVRFLAGLPLELIADLSQPPGIGDKAILRRAARQAGLSRSSSLVKRAIQFGSQIAKLSNVASFGAV 318          
BLAST of mRNA_M-pyrifera_M_contig107744.1644.1 vs. uniprot
Match: W4GZA9_9STRA (Glutamine amidotransferase type-2 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZA9_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.130e-35
Identity = 68/129 (52.71%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 GADEQLAGYGRHRNAWRKRGEDGIKLELDKDTARLWIRNLGRDDRAISSLGKESRLPYLDCDLMEFLSALDTDMICDFEEPAGVGDKRILRELARRLRLTQASAFPKRALQFGSRISRLTNSKNGGHVP 387
            GADEQ+AGYGRH++A+   G DG++ ELDKD  R+W RNLGRDDR I+  G+E+R PYLD D++ +L +L  D + DF +P GVGDK ILR +AR+L L   +A  K+A+QFG+RI++ +N +  G  P
Sbjct:  531 GADEQVAGYGRHKHAYVTGGWDGLRAELDKDMRRIWQRNLGRDDRMIADHGREARFPYLDEDVVAYLRSLPLDHVVDFAQPRGVGDKLILRIVARQLGLKHCTALAKQAIQFGTRIAKQSNERVVGLHP 659          
BLAST of mRNA_M-pyrifera_M_contig107744.1644.1 vs. uniprot
Match: A0A7S2U3U8_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U3U8_9EUKA)

HSP 1 Score: 130 bits (326), Expect = 3.250e-35
Identity = 69/128 (53.91%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    4 ADEQLAGYGRHRNAWRKRGEDGIKLELDKDTARLWIRNLGRDDRAISSLGKESRLPYLDCDLMEFLSALDTDMICDFEEPAGVGDKRILRELARRLRLTQASAFPKRALQFGSRISRLTNSKNGGHVP 387
            ADE LAGYGRHR+ + KRG+D +KLEL KD  RLW RNL RDDR +S  G+E+R P+LD +++E + AL    IC+FE P G G+K ILR +A  L L +A    KRA+QFG+   RL NSK  G  P
Sbjct:    1 ADELLAGYGRHRSTFNKRGQDALKLELQKDIGRLWERNLARDDRVLSECGREARHPFLDRNVLETVKALPVTDICNFELPPGEGEKFILRVIALHLGLHKACVLQKRAMQFGT---RLANSKVPGQQP 125          
BLAST of mRNA_M-pyrifera_M_contig107744.1644.1 vs. uniprot
Match: A0A484KF23_9ASTE (Asparagine synthetase domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KF23_9ASTE)

HSP 1 Score: 132 bits (331), Expect = 8.100e-35
Identity = 68/126 (53.97%), Postives = 88/126 (69.84%), Query Frame = 1
Query:    1 GADEQLAGYGRHRNAWRKRGEDGIKLELDKDTARLWIRNLGRDDRAISSLGKESRLPYLDCDLMEFLSALDTDMICDFEEPAGVGDKRILRELARRLRLTQASAFPKRALQFGSRISRLTNSKNGG 378
            GADEQ AGYGRHR  +R     G+  E+  D  R+W RNLGRDDR I+  GKE+R P+LD D++  L  +    I D  +P+GVGDK ILRE+AR L L++A++ PKRA+QFGSRI+R +N KN G
Sbjct:  184 GADEQCAGYGRHRTKFRNGSWLGLSEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRALLDIPLWEIADLNQPSGVGDKMILREIARSLGLSEAASLPKRAIQFGSRIARESNRKNFG 309          
BLAST of mRNA_M-pyrifera_M_contig107744.1644.1 vs. uniprot
Match: A0A7D9K7D4_PARCT (Asparagine synthetase domain-containing 1-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K7D4_PARCT)

HSP 1 Score: 125 bits (315), Expect = 1.560e-34
Identity = 65/127 (51.18%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 GADEQLAGYGRHRNAWRKRGEDGIKLELDKDTARLWIRNLGRDDRAISSLGKESRLPYLDCDLMEFLSALDTDMICDFEEPAGVGDKRILRELARRLRLTQASAFPKRALQFGSRISRLTNSKNGGH 381
            GADEQL GY RHR+ + K G  G+  E++ +  R+  RNLGRDDR IS  G+ESR P+LD D++ FL+AL   + CD   P G+G+K ILR++A+ L LT +S  PKRA+QFGSRI++L +S   G+
Sbjct:    7 GADEQLGGYARHRSRFNKEGWKGLVDEIEMEVERISERNLGRDDRCISDHGRESRCPFLDEDVVSFLNALPVWIKCDPRLPRGIGEKIILRQVAKSLGLTGSSELPKRAIQFGSRIAKLESSSEKGN 133          
BLAST of mRNA_M-pyrifera_M_contig107744.1644.1 vs. uniprot
Match: A0A024U2Z5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2Z5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.720e-34
Identity = 65/129 (50.39%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 GADEQLAGYGRHRNAWRKRGEDGIKLELDKDTARLWIRNLGRDDRAISSLGKESRLPYLDCDLMEFLSALDTDMICDFEEPAGVGDKRILRELARRLRLTQASAFPKRALQFGSRISRLTNSKNGGHVP 387
            GADEQ+AGY RH+ A+  +G DG++ ELD D +R+W RNLGRDDR I+  G+E+R PYLD D++  L ++  D + DF +P GVGDK ILR +AR+L L   +   K+A+QFG+RI++ +N +  GH P
Sbjct:  487 GADEQVAGYSRHKEAFVTKGWDGLRAELDMDMSRIWQRNLGRDDRMIADHGREARFPYLDEDVIALLRSIPLDHVVDFAQPRGVGDKLILRIVARQLGLIHCTGLAKQAIQFGTRIAKQSNDRVLGHKP 615          
BLAST of mRNA_M-pyrifera_M_contig107744.1644.1 vs. uniprot
Match: T0QWD4_SAPDV (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QWD4_SAPDV)

HSP 1 Score: 134 bits (337), Expect = 2.610e-34
Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 GADEQLAGYGRHRNAWRKRGEDGIKLELDKDTARLWIRNLGRDDRAISSLGKESRLPYLDCDLMEFLSALDTDMICDFEEPAGVGDKRILRELARRLRLTQASAFPKRALQFGSRISRLTNS 366
            GADEQLAGYGRH+ A+ + G DG++ EL  D  RLW+RNLGRDDR IS  G+E+R PYLD  ++ FL+A   D + DF +P GVGDK +LR +AR L L   +  PK+A+QFG+R+++ +N+
Sbjct:  403 GADEQLAGYGRHKAAFERDGYDGLRAELRMDMDRLWLRNLGRDDRMISDHGREARFPYLDEHVVNFLAATPLDDVVDFSQPRGVGDKLLLRVVARGLGLRHCTGLPKQAIQFGTRMAKHSNA 524          
BLAST of mRNA_M-pyrifera_M_contig107744.1644.1 vs. uniprot
Match: A0A7N0TSS8_KALFE (Uncharacterized protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TSS8_KALFE)

HSP 1 Score: 134 bits (338), Expect = 3.720e-34
Identity = 68/126 (53.97%), Postives = 89/126 (70.63%), Query Frame = 1
Query:    1 GADEQLAGYGRHRNAWRKRGEDGIKLELDKDTARLWIRNLGRDDRAISSLGKESRLPYLDCDLMEFLSALDTDMICDFEEPAGVGDKRILRELARRLRLTQASAFPKRALQFGSRISRLTNSKNGG 378
            GADEQ AGYGRHR ++R +G  G+  E+  D  R+W RNLGRDDR I+  GKE+R P+LD D++  L  L   ++ D  +P+GVGDK ILRE+AR L +  A+ FPKRA+QFGSRI+R +N  N G
Sbjct:  505 GADEQCAGYGRHRTSFRSKGWVGLNEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRTLLDLPLWVVADLNKPSGVGDKSILREVARLLGIKHAATFPKRAIQFGSRIARESNRTNFG 630          
BLAST of mRNA_M-pyrifera_M_contig107744.1644.1 vs. uniprot
Match: A0A251RRZ3_HELAN (Putative asparagine synthase family protein n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RRZ3_HELAN)

HSP 1 Score: 134 bits (337), Expect = 4.670e-34
Identity = 67/126 (53.17%), Postives = 88/126 (69.84%), Query Frame = 1
Query:    1 GADEQLAGYGRHRNAWRKRGEDGIKLELDKDTARLWIRNLGRDDRAISSLGKESRLPYLDCDLMEFLSALDTDMICDFEEPAGVGDKRILRELARRLRLTQASAFPKRALQFGSRISRLTNSKNGG 378
            GADEQ AGYGRH+  ++K    G+  E+  D  R+W RNLGRDDR I+  GKE+R P+LD D++  L  +    I D  +P+GVGDK+ILRE+AR L L +A+  PKRA+QFGSRI+R +N KN G
Sbjct:  488 GADEQCAGYGRHKTKYKKSSWAGLNEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRILLDIPLWEIADLRQPSGVGDKKILREVARMLHLQEAAVLPKRAIQFGSRIARESNRKNFG 613          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107744.1644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7GC91_PHATC4.150e-3755.12Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2WG35_9STRA2.200e-3550.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W4GZA9_9STRA3.130e-3552.71Glutamine amidotransferase type-2 domain-containin... [more]
A0A7S2U3U8_9EUKA3.250e-3553.91Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A484KF23_9ASTE8.100e-3553.97Asparagine synthetase domain-containing protein n=... [more]
A0A7D9K7D4_PARCT1.560e-3451.18Asparagine synthetase domain-containing 1-like (Fr... [more]
A0A024U2Z5_9STRA1.720e-3450.39Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
T0QWD4_SAPDV2.610e-3453.28Glutamine amidotransferase type-2 domain-containin... [more]
A0A7N0TSS8_KALFE3.720e-3453.97Uncharacterized protein n=2 Tax=Kalanchoe fedtsche... [more]
A0A251RRZ3_HELAN4.670e-3453.17Putative asparagine synthase family protein n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107744contigM-pyrifera_M_contig107744:212..616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue2.9e-32
Seed eggNOG ortholog2850.Phatr49902
Preferred nameASNSD1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004066,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006528,GO:0006529,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0032787,GO:0034641,GO:0042802,GO:0042803,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046983,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.Asparagine synthase
EggNOG OGs2XDIA@2836,COG0367@1,KOG0573@2759
COG Functional cat.E
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.8498282-CDS-M-pyrifera_M_contig107744:211..6161622815586.8498282-CDS-M-pyrifera_M_contig107744:211..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107744 212..616 -
1692277475.9932525-CDS-M-pyrifera_M_contig107744:211..6161692277475.9932525-CDS-M-pyrifera_M_contig107744:211..616Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107744 212..616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107744.1644.1prot_M-pyrifera_M_contig107744.1644.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107744 212..616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107744.1644.1

>prot_M-pyrifera_M_contig107744.1644.1 ID=prot_M-pyrifera_M_contig107744.1644.1|Name=mRNA_M-pyrifera_M_contig107744.1644.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
GADEQLAGYGRHRNAWRKRGEDGIKLELDKDTARLWIRNLGRDDRAISSL
GKESRLPYLDCDLMEFLSALDTDMICDFEEPAGVGDKRILRELARRLRLT
QASAFPKRALQFGSRISRLTNSKNGGHVPFEGYR*
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mRNA from alignment at M-pyrifera_M_contig107744:212..616-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107744.1644.1 ID=mRNA_M-pyrifera_M_contig107744.1644.1|Name=mRNA_M-pyrifera_M_contig107744.1644.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig107744:212..616- (Macrocystis pyrifera P11B4 male)
GGCGCCGACGAGCAGCTGGCAGGGTACGGCCGCCACAGGAACGCCTGGAG GAAGCGTGGAGAGGACGGTATCAAGCTCGAGCTCGACAAGGACACGGCCA GGCTGTGGATCAGGAACCTGGGCAGGGACGACCGCGCCATCTCTTCGCTC GGGAAGGAGTCGCGCCTTCCCTACCTCGACTGCGACCTCATGGAATTCCT CAGCGCATTGGACACAGACATGATTTGCGACTTTGAGGAGCCAGCTGGCG TGGGAGACAAGCGCATCCTGAGAGAGCTTGCGCGTAGACTTCGCCTTACA CAAGCAAGCGCCTTTCCCAAGCGGGCGCTGCAGTTTGGCAGCCGCATTTC TCGCCTTACAAACAGCAAGAACGGTGGCCATGTCCCGTTTGAGGGATACC GCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107744:212..616-

>mRNA_M-pyrifera_M_contig107744.1644.1 ID=mRNA_M-pyrifera_M_contig107744.1644.1|Name=mRNA_M-pyrifera_M_contig107744.1644.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig107744:212..616- (Macrocystis pyrifera P11B4 male)
GGCGCCGACGAGCAGCTGGCAGGGTACGGCCGCCACAGGAACGCCTGGAG
GAAGCGTGGAGAGGACGGTATCAAGCTCGAGCTCGACAAGGACACGGCCA
GGCTGTGGATCAGGAACCTGGGCAGGGACGACCGCGCCATCTCTTCGCTC
GGGAAGGAGTCGCGCCTTCCCTACCTCGACTGCGACCTCATGGAATTCCT
CAGCGCATTGGACACAGACATGATTTGCGACTTTGAGGAGCCAGCTGGCG
TGGGAGACAAGCGCATCCTGAGAGAGCTTGCGCGTAGACTTCGCCTTACA
CAAGCAAGCGCCTTTCCCAAGCGGGCGCTGCAGTTTGGCAGCCGCATTTC
TCGCCTTACAAACAGCAAGAACGGTGGCCATGTCCCGTTTGAGGGATACC
GCTGAGGCGCCGACGAGCAGCTGGCAGGGTACGGCCGCCACAGGAACGCC
TGGAGGAAGCGTGGAGAGGACGGTATCAAGCTCGAGCTCGACAAGGACAC
GGCCAGGCTGTGGATCAGGAACCTGGGCAGGGACGACCGCGCCATCTCTT
CGCTCGGGAAGGAGTCGCGCCTTCCCTACCTCGACTGCGACCTCATGGAA
TTCCTCAGCGCATTGGACACAGACATGATTTGCGACTTTGAGGAGCCAGC
TGGCGTGGGAGACAAGCGCATCCTGAGAGAGCTTGCGCGTAGACTTCGCC
TTACACAAGCAAGCGCCTTTCCCAAGCGGGCGCTGCAGTTTGGCAGCCGC
ATTTCTCGCCTTACAAACAGCAAGAACGGTGGCCATGTCCCGTTTGAGGG
ATACCGCTGA
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