mRNA_M-pyrifera_M_contig107660.1637.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107660.1637.1
Unique NamemRNA_M-pyrifera_M_contig107660.1637.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig107660.1637.1 vs. uniprot
Match: A0A7S3XZ48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ48_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 1.910e-13
Identity = 28/47 (59.57%), Postives = 41/47 (87.23%), Query Frame = 1
Query:    7 AEDVKDIFSMARHGRVAEMNELLDAGIPVDVRDEWGNSLLHVACQNG 147
            A+D++D+FS ARH RV ++  LLDAG+PV++RD++GN++L VACQNG
Sbjct:   13 AKDLEDVFSYARHNRVDDLERLLDAGMPVNIRDQYGNTVLCVACQNG 59          
BLAST of mRNA_M-pyrifera_M_contig107660.1637.1 vs. uniprot
Match: A0A7S1TRF9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRF9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.760e-12
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1
Query:   10 EDVKDIFSMARHGRVAEMNELLDAGIPVDVRDEWGNSLLHVACQNG 147
            +DV+DIFS ARH RV +M  +LD G+PV+VRD++GN+LL V+CQNG
Sbjct:  141 KDVEDIFSYARHNRVEDMEAVLDRGVPVNVRDQYGNTLLIVSCQNG 186          
BLAST of mRNA_M-pyrifera_M_contig107660.1637.1 vs. uniprot
Match: A0A5A8E191_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E191_CAFRO)

HSP 1 Score: 67.4 bits (163), Expect = 5.320e-12
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 LRAEDVKDIFSMARHGRVAEMNELLDAGIPVDVRDEWGNSLLHVACQNG 147
            L ++ VKD+FS+ARH RVA++  LLD G+PVD+ D  GN++L VACQNG
Sbjct:  193 LSSDAVKDVFSLARHNRVADLTALLDRGVPVDIADAHGNTILIVACQNG 241          
BLAST of mRNA_M-pyrifera_M_contig107660.1637.1 vs. uniprot
Match: A0A7S1C915_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C915_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.430e-11
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 LRAEDVKDIFSMARHGRVAEMNELLDAGIPVDVRDEWGNSLLHVACQNG 147
            L  ++V D+FS+ARH R  E+  LLD G+PV++RD+ GN++L +ACQNG
Sbjct:   22 LSEKEVADVFSLARHNRCKEVEALLDRGVPVNLRDKHGNTILTIACQNG 70          
BLAST of mRNA_M-pyrifera_M_contig107660.1637.1 vs. uniprot
Match: A0A482SIQ9_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIQ9_9ARCH)

HSP 1 Score: 65.1 bits (157), Expect = 3.840e-11
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   10 EDVKDIFSMARHGRVAEMNELLDAGIPVDVRDEWGNSLLHVACQNG 147
            +DV+DIF   RHGRV E+  LL  G+PVD+RD +GN+LL +ACQNG
Sbjct:  194 QDVEDIFRFTRHGRVDEIEILLTKGVPVDIRDTYGNTLLIIACQNG 239          
BLAST of mRNA_M-pyrifera_M_contig107660.1637.1 vs. uniprot
Match: A4SB19_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4SB19_OSTLU)

HSP 1 Score: 61.6 bits (148), Expect = 6.290e-11
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    4 RAEDVKDIFSMARHGRVAEMNELLDAGIPVDVRDEWGNSLLHVACQNG 147
            +  +V+++FS ARHGR  E+ +L+  G+P+D RDE GNS L +ACQNG
Sbjct:    9 KISEVRNLFSFARHGRYGELKKLIMKGVPLDARDEMGNSALIIACQNG 56          
BLAST of mRNA_M-pyrifera_M_contig107660.1637.1 vs. uniprot
Match: A0A485KLK5_9STRA (Aste57867_8880 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLK5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.820e-10
Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    7 AEDVK-DIFSMARHGRVAEMNELLDAGIPVDVRDEWGNSLLHVACQNG 147
            A+ VK D+FS+ARH RV ++ ++LD+G+PV+++D +GNSLL +ACQNG
Sbjct:  135 AKPVKADVFSLARHNRVDDVRDMLDSGLPVNIQDAYGNSLLLIACQNG 182          
BLAST of mRNA_M-pyrifera_M_contig107660.1637.1 vs. uniprot
Match: A0A7S2MBB0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MBB0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.980e-10
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 1
Query:   13 DVKDIFSMARHGRVAEMNELLDAGIPVDVRDEWGNSLLHVACQNG 147
            DV+DIFS ARH R  ++  LLD GIPV++RD+ GN++L ++CQNG
Sbjct:  119 DVEDIFSYARHNRFEDIERLLDQGIPVNIRDKTGNTILAISCQNG 163          
BLAST of mRNA_M-pyrifera_M_contig107660.1637.1 vs. uniprot
Match: A0A7S3HME0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HME0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.240e-10
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 LRAEDVKDIFSMARHGRVAEMNELLDAGIPVDVRDEWGNSLLHVACQNG 147
            L  +DV+D+FS ARHGR  E+  L   G+PVDVR++ GN++L VACQNG
Sbjct:  168 LSEKDVEDVFSYARHGRCEEIERLFAKGLPVDVRNDHGNTVLIVACQNG 216          
BLAST of mRNA_M-pyrifera_M_contig107660.1637.1 vs. uniprot
Match: A0A7S0PQ21_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PQ21_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 3.190e-10
Identity = 25/45 (55.56%), Postives = 37/45 (82.22%), Query Frame = 1
Query:   13 DVKDIFSMARHGRVAEMNELLDAGIPVDVRDEWGNSLLHVACQNG 147
            +++++FS ARHGR ++M +LL+ G+P+D RDE GNS L +ACQNG
Sbjct:  523 EMRNLFSFARHGRYSQMKDLLNKGVPIDARDENGNSALIIACQNG 567          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107660.1637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XZ48_HETAK1.910e-1359.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TRF9_9STRA2.760e-1263.04Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5A8E191_CAFRO5.320e-1259.18Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A7S1C915_9STRA3.430e-1153.06Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A482SIQ9_9ARCH3.840e-1160.87Ankyrin repeat domain-containing protein n=1 Tax=a... [more]
A4SB19_OSTLU6.290e-1152.08Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A485KLK5_9STRA1.820e-1056.25Aste57867_8880 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S2MBB0_9STRA1.980e-1057.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3HME0_9STRA2.240e-1057.14Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0PQ21_9CHLO3.190e-1055.56Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107660contigM-pyrifera_M_contig107660:461..607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog242159.ABP00855
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.acyl-coa-binding protein
EggNOG OGsCOG4281@1,KOG0817@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.5621107-CDS-M-pyrifera_M_contig107660:460..6071622815586.5621107-CDS-M-pyrifera_M_contig107660:460..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107660 461..607 +
1692277475.8877673-CDS-M-pyrifera_M_contig107660:460..6071692277475.8877673-CDS-M-pyrifera_M_contig107660:460..607Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107660 461..607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107660.1637.1prot_M-pyrifera_M_contig107660.1637.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107660 461..607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107660.1637.1

>prot_M-pyrifera_M_contig107660.1637.1 ID=prot_M-pyrifera_M_contig107660.1637.1|Name=mRNA_M-pyrifera_M_contig107660.1637.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
LRAEDVKDIFSMARHGRVAEMNELLDAGIPVDVRDEWGNSLLHVACQNG
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mRNA from alignment at M-pyrifera_M_contig107660:461..607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107660.1637.1 ID=mRNA_M-pyrifera_M_contig107660.1637.1|Name=mRNA_M-pyrifera_M_contig107660.1637.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig107660:461..607+ (Macrocystis pyrifera P11B4 male)
CTACGTGCAGAAGATGTAAAAGATATCTTTTCCATGGCGAGACACGGCCG AGTGGCAGAGATGAACGAGTTGCTTGATGCTGGAATCCCAGTGGATGTGA GAGACGAGTGGGGAAATTCGCTCCTGCACGTGGCGTGCCAGAATGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107660:461..607+

>mRNA_M-pyrifera_M_contig107660.1637.1 ID=mRNA_M-pyrifera_M_contig107660.1637.1|Name=mRNA_M-pyrifera_M_contig107660.1637.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig107660:461..607+ (Macrocystis pyrifera P11B4 male)
CTACGTGCAGAAGATGTAAAAGATATCTTTTCCATGGCGAGACACGGCCG
AGTGGCAGAGATGAACGAGTTGCTTGATGCTGGAATCCCAGTGGATGTGA
GAGACGAGTGGGGAAATTCGCTCCTGCACGTGGCGTGCCAGAATGGACTA
CGTGCAGAAGATGTAAAAGATATCTTTTCCATGGCGAGACACGGCCGAGT
GGCAGAGATGAACGAGTTGCTTGATGCTGGAATCCCAGTGGATGTGAGAG
ACGAGTGGGGAAATTCGCTCCTGCACGTGGCGTGCCAGAATGGA
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