mRNA_M-pyrifera_M_contig107633.1626.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig107633.1626.1
Unique NamemRNA_M-pyrifera_M_contig107633.1626.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig107633.1626.1 vs. uniprot
Match: UPI0015C4D99D (protein adenylyltransferase SelO family protein n=1 Tax=Candidatus Entotheonella palauensis TaxID=93172 RepID=UPI0015C4D99D)

HSP 1 Score: 211 bits (537), Expect = 7.490e-66
Identity = 102/161 (63.35%), Postives = 124/161 (77.02%), Query Frame = 1 
Query:   13 QADRDLVEQITGILPAIETDMTLFFRGLAHVPGGST---DDDALLAPLLDAYYSPDDLAGDVRDATLAWLRNYSARVTRDGRPDADRAAAMNRVNPKYVLRNYLAQLAIDASEQGDHDMIGELLDVLRHPYDEQPGKERFAEKRPDWARTRAGCSMLSCSS 486
            + D DL++++  +L  +ETDMTLF+R LA V  G     DD+AL+APLLDAYYSP++L G+ R     WLR Y ARV RDG PDA R   MN VNPKYVLRNYLAQLAID +EQGD+ M+ +LL++LRHPYDEQP +E +A+KRPDWAR RAGCSMLSCSS
Sbjct:  121 ETDDDLIKELQTVLQLVETDMTLFYRNLARVETGMAGHGDDEALMAPLLDAYYSPEELTGEYRARIGTWLRRYLARVGRDGTPDALRRERMNAVNPKYVLRNYLAQLAIDQAEQGDYSMVRDLLELLRHPYDEQPEQEEYAKKRPDWARHRAGCSMLSCSS 281
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BLAST of mRNA_M-pyrifera_M_contig107633.1626.1 vs. uniprot
Match: A0A7K1Z711_9ACTN (Protein adenylyltransferase SelO n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z711_9ACTN)

HSP 1 Score: 215 bits (547), Expect = 1.850e-64
Identity = 111/164 (67.68%), Postives = 121/164 (73.78%), Query Frame = 1 
Query:    1 DPDDQADRDLVEQITGILPAIETDMTLFFRGLAHVPGGST--DDDALLAPLLDAYYSPDDLAGDVRDATLAWLRNYSARVTRDGRPDADRAAAMNRVNPKYVLRNYLAQLAIDASEQGDHDMIGELLDVLRHPYDEQPGKERFAEKRPDWARTRAGCSMLSCSS 486
            D D + D+ L+E +  +LP  ETDMTLFFR LA +   S   DD  LLAPLLDAYY PD L+GD R AT+AWLR Y  RV   GRPDA R  AMN VNPKYVLRNYLAQLAID +EQGD  +  ELLDVLR PYDEQP  ERFA KRPDWARTR GCSMLSCSS
Sbjct:  376 DFDPEFDQSLIEGLLELLPRAETDMTLFFRRLAEIDAASQLIDDAELLAPLLDAYYLPDQLSGDHRGATVAWLRRYRERVATGGRPDAVRRRAMNSVNPKYVLRNYLAQLAIDDAEQGDFALTSELLDVLRRPYDEQPEHERFAAKRPDWARTRPGCSMLSCSS 539
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BLAST of mRNA_M-pyrifera_M_contig107633.1626.1 vs. uniprot
Match: A0A2E8L9J8_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L9J8_9ACTN)

HSP 1 Score: 202 bits (515), Expect = 6.200e-64
Identity = 102/163 (62.58%), Postives = 119/163 (73.01%), Query Frame = 1 
Query:    1 DPDDQADRDLVEQITGILPAIETDMTLFFRGLAHVP-GGSTDDDALLAPLLDAYYSPDDLAGDVRDATLAWLRNYSARVTRDGRPDADRAAAMNRVNPKYVLRNYLAQLAIDASEQGDHDMIGELLDVLRHPYDEQPGKERFAEKRPDWARTRAGCSMLSCSS 486
            D D + D +L+  +  +LP +ETDMTLFFRGLA+V      DDDA +APLL AYY PD   GDVR  T AWL  Y ARV ++GR DADRA AMN +NP +VLRNYLAQLAID ++ GD  +  ELLD LR PY EQPG+ERFA KRP+WAR R GCSMLSCSS
Sbjct:   15 DLDGERDSELIHDLLELLPKLETDMTLFFRGLANVSTDDGLDDDARVAPLLGAYYDPDAFNGDVRAETDAWLDRYIARVRKEGRTDADRAEAMNAINPLFVLRNYLAQLAIDEADNGDPSLFLELLDTLRTPYTEQPGRERFAGKRPEWARVRPGCSMLSCSS 177
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BLAST of mRNA_M-pyrifera_M_contig107633.1626.1 vs. uniprot
Match: W4L813_9BACT (Protein adenylyltransferase SelO n=4 Tax=Candidatus Entotheonella TaxID=93171 RepID=W4L813_9BACT)

HSP 1 Score: 211 bits (537), Expect = 5.960e-63
Identity = 102/161 (63.35%), Postives = 124/161 (77.02%), Query Frame = 1 
Query:   13 QADRDLVEQITGILPAIETDMTLFFRGLAHVPGGST---DDDALLAPLLDAYYSPDDLAGDVRDATLAWLRNYSARVTRDGRPDADRAAAMNRVNPKYVLRNYLAQLAIDASEQGDHDMIGELLDVLRHPYDEQPGKERFAEKRPDWARTRAGCSMLSCSS 486
            + D DL++++  +L  +ETDMTLF+R LA V  G     DD+AL+APLLDAYYSP++L G+ R     WLR Y ARV RDG PDA R   MN VNPKYVLRNYLAQLAID +EQGD+ M+ +LL++LRHPYDEQP +E +A+KRPDWAR RAGCSMLSCSS
Sbjct:  382 ETDDDLIKELQTVLQLVETDMTLFYRNLARVETGMAGHGDDEALMAPLLDAYYSPEELTGEYRARIGTWLRRYLARVGRDGTPDALRRERMNAVNPKYVLRNYLAQLAIDQAEQGDYSMVRDLLELLRHPYDEQPEQEEYAKKRPDWARHRAGCSMLSCSS 542
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BLAST of mRNA_M-pyrifera_M_contig107633.1626.1 vs. uniprot
Match: A0A1W2BHW0_9DELT (Protein adenylyltransferase SelO n=1 Tax=Desulfocicer vacuolatum DSM 3385 TaxID=1121400 RepID=A0A1W2BHW0_9DELT)

HSP 1 Score: 207 bits (526), Expect = 1.970e-61
Identity = 98/163 (60.12%), Postives = 123/163 (75.46%), Query Frame = 1 
Query:   13 QADRDLVEQITGILPAIETDMTLFFRGLA--HVPGG---STDDDALLAPLLDAYYSPDDLAGDVRDATLAWLRNYSARVTRDGRPDADRAAAMNRVNPKYVLRNYLAQLAIDASEQGDHDMIGELLDVLRHPYDEQPGKERFAEKRPDWARTRAGCSMLSCSS 486
            + D DL+  +  +LP +ETDMTLFFR LA  ++P G   S  DD  +APL++AYY+P++L    ++  +AWL+ Y  R+T+DG P   R  AMNRVNPKYVLRNYLAQLAID +E G+H M+ ELL+V+RHPYDEQP KE FAEKRP+WAR RAGCSMLSCSS
Sbjct:  368 ETDEDLISDLLDLLPLVETDMTLFFRNLAVVNIPDGAEFSGRDDTSMAPLMEAYYTPEELTPAYKEKMIAWLKRYGVRLTKDGIPSDKRREAMNRVNPKYVLRNYLAQLAIDKAEAGEHGMVKELLEVMRHPYDEQPEKEHFAEKRPEWARNRAGCSMLSCSS 530
[Close]
BLAST of mRNA_M-pyrifera_M_contig107633.1626.1 vs. uniprot
Match: A0A3C1K8U9_9MICO (Protein adenylyltransferase SelO n=8 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1K8U9_9MICO)

HSP 1 Score: 204 bits (518), Expect = 3.330e-60
Identity = 104/164 (63.41%), Postives = 122/164 (74.39%), Query Frame = 1 
Query:    7 DDQADRDLVEQITGILPAIETDMTLFFRGLAHVPGGSTDD----DALLAPLLDAYYSPDDLAGDVRDATLAWLRNYSARVTRDGRPDADRAAAMNRVNPKYVLRNYLAQLAIDASEQGDHDMIGELLDVLRHPYDEQPGKERFAEKRPDWARTRAGCSMLSCSS 486
            D + D +L+  +  +LP IETDMTLFFRGLA+V   STDD    DA +APLL AYY PD   GDVR  T AWL  Y AR+  +GRPDA+R+ AMN VNP +VLRNY+AQLAID ++ GD  +I ELLD LR PY EQPG+ERFAEKRP+WAR R GCSMLSCSS
Sbjct:  375 DGERDTELIHDLLELLPKIETDMTLFFRGLANV---STDDGLDLDARVAPLLGAYYDPDTFTGDVRAETDAWLDRYIARLREEGRPDANRSQAMNAVNPLFVLRNYVAQLAIDEADNGDPSLILELLDTLRTPYTEQPGRERFAEKRPEWARVRPGCSMLSCSS 535
[Close]
BLAST of mRNA_M-pyrifera_M_contig107633.1626.1 vs. uniprot
Match: A0A1M6MKT6_MALRU (Protein adenylyltransferase SelO n=2 Tax=Malonomonas rubra TaxID=57040 RepID=A0A1M6MKT6_MALRU)

HSP 1 Score: 201 bits (511), Expect = 5.620e-59
Identity = 102/157 (64.97%), Postives = 113/157 (71.97%), Query Frame = 1 
Query:   19 DRDLVEQITGILPAIETDMTLFFRGLAHVPGG-STDDDALLAPLLDAYYSPDDLAGDVRDATLAWLRNYSARVTRDGRPDADRAAAMNRVNPKYVLRNYLAQLAIDASEQGDHDMIGELLDVLRHPYDEQPGKERFAEKRPDWARTRAGCSMLSCSS 486
            D DLV+++  +L   ETDMT+F+R LA +  G   DD+ LL PLL AYY PD+L  D       WLR Y  R  R GRPD  RA  MNRVNPKYVLRNYLAQ AID +E GD  MIGELLDVLR PYDEQP KERFAEKRP+WAR RAGCSMLSCSS
Sbjct:  402 DEDLVKELEQVLMLTETDMTIFYRRLATLTAGIDADDEELLQPLLAAYYQPDELDADKTARIAHWLRTYLTRARRSGRPDDVRAEKMNRVNPKYVLRNYLAQQAIDRAEGGDFSMIGELLDVLRQPYDEQPEKERFAEKRPEWARNRAGCSMLSCSS 558
[Close]
BLAST of mRNA_M-pyrifera_M_contig107633.1626.1 vs. uniprot
Match: UPI0012D03C29 (protein adenylyltransferase SelO family protein n=3 Tax=Escherichia coli TaxID=562 RepID=UPI0012D03C29)

HSP 1 Score: 188 bits (477), Expect = 2.080e-58
Identity = 95/158 (60.13%), Postives = 116/158 (73.42%), Query Frame = 1 
Query:   19 DRDLVEQITGILPAIETDMTLFFRGLAHVPGGSTD--DDALLAPLLDAYYSPDDLAGDVRDATLAWLRNYSARVTRDGRPDADRAAAMNRVNPKYVLRNYLAQLAIDASEQGDHDMIGELLDVLRHPYDEQPGKERFAEKRPDWARTRAGCSMLSCSS 486
            D  LV+ +  +L A+ETDMTLF+R LA VP  +TD  D +LLAPL  A+Y    +  + R   LAWLR Y+ARV  DG  DA+R   MN VNPK+VLRNY+AQLAIDA+E+ D  ++ ELL+VLR P+DE PGKERFAEKRP+WAR R GCSMLSCSS
Sbjct:    2 DATLVDDLIELLAAVETDMTLFYRHLADVPAAATDATDASLLAPLEVAFYDAAAVDAEHRARLLAWLRRYTARVREDGTTDAERKGRMNLVNPKFVLRNYVAQLAIDAAEKADGSVVLELLEVLRRPFDEHPGKERFAEKRPEWARNRPGCSMLSCSS 159
[Close]
BLAST of mRNA_M-pyrifera_M_contig107633.1626.1 vs. uniprot
Match: A0A2E7KCE4_9PLAN (Protein adenylyltransferase SelO n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KCE4_9PLAN)

HSP 1 Score: 198 bits (504), Expect = 3.880e-58
Identity = 96/161 (59.63%), Postives = 119/161 (73.91%), Query Frame = 1 
Query:   13 QADRD--LVEQITGILPAIETDMTLFFRGLAHVP-GGSTDDDALLAPLLDAYYSPDDLAGDVRDATLAWLRNYSARVTRDGRPDADRAAAMNRVNPKYVLRNYLAQLAIDASEQGDHDMIGELLDVLRHPYDEQPGKERFAEKRPDWARTRAGCSMLSCSS 486
            QAD D  L+E +  +L  +ETDMT+FFR LA +      DD+ LLAPL DAYY+P+ + GD++     WLR Y  R+ +DG   A+R   MN+ NPKYVLRNYLAQLAID +E+GD  ++ ELLDVLRHPYDEQPG+E+FAEKRP+WAR R GCSMLSCSS
Sbjct:  375 QADEDVPLIESLQEVLQLVETDMTIFFRRLALLETDADLDDETLLAPLRDAYYAPEKVTGDIQKQICDWLRRYQNRLQQDGTEPAERRTRMNQNNPKYVLRNYLAQLAIDKAEEGDFSLVNELLDVLRHPYDEQPGREQFAEKRPEWARNRPGCSMLSCSS 535
[Close]
BLAST of mRNA_M-pyrifera_M_contig107633.1626.1 vs. uniprot
Match: A0A6I6A8K5_9PLAN (Protein adenylyltransferase SelO n=3 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A8K5_9PLAN)

HSP 1 Score: 198 bits (504), Expect = 3.880e-58
Identity = 94/161 (58.39%), Postives = 119/161 (73.91%), Query Frame = 1 
Query:   13 QADRD--LVEQITGILPAIETDMTLFFRGLAHVP-GGSTDDDALLAPLLDAYYSPDDLAGDVRDATLAWLRNYSARVTRDGRPDADRAAAMNRVNPKYVLRNYLAQLAIDASEQGDHDMIGELLDVLRHPYDEQPGKERFAEKRPDWARTRAGCSMLSCSS 486
            QAD D  L+E +  +L  +ETDMT+FFR LA +      DD+ LLAPL DAYY+P+ + GD++     WLR Y  R+ +DG   A+R   MN +NPKYVLRNYLAQ+AID +E+GD  ++ ELLDVLRHPYDEQPG+E++AEKRP+WAR R GCSMLSCSS
Sbjct:  375 QADEDVSLIESLQEVLQLVETDMTIFFRRLALLETDADLDDETLLAPLRDAYYAPEKVTGDIQKQICDWLRRYQNRLQQDGTEPAERRTRMNEINPKYVLRNYLAQIAIDKAEEGDFSLVNELLDVLRHPYDEQPGREQYAEKRPEWARNRPGCSMLSCSS 535
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig107633.1626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015C4D99D7.490e-6663.35protein adenylyltransferase SelO family protein n=... [more]
A0A7K1Z711_9ACTN1.850e-6467.68Protein adenylyltransferase SelO n=2 Tax=Acidimicr... [more]
A0A2E8L9J8_9ACTN6.200e-6462.58Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
W4L813_9BACT5.960e-6363.35Protein adenylyltransferase SelO n=4 Tax=Candidatu... [more]
A0A1W2BHW0_9DELT1.970e-6160.12Protein adenylyltransferase SelO n=1 Tax=Desulfoci... [more]
A0A3C1K8U9_9MICO3.330e-6063.41Protein adenylyltransferase SelO n=8 Tax=Actinobac... [more]
A0A1M6MKT6_MALRU5.620e-5964.97Protein adenylyltransferase SelO n=2 Tax=Malonomon... [more]
UPI0012D03C292.080e-5860.13protein adenylyltransferase SelO family protein n=... [more]
A0A2E7KCE4_9PLAN3.880e-5859.63Protein adenylyltransferase SelO n=8 Tax=Gimesia T... [more]
A0A6I6A8K5_9PLAN3.880e-5858.39Protein adenylyltransferase SelO n=3 Tax=Gimesia T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig107633contigM-pyrifera_M_contig107633:130..618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score186.4
Seed ortholog evalue1e-44
Seed eggNOG ortholog314278.NB231_14638
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the UPF0061 (SELO) family
EggNOG OGs1MVK3@1224,1RNCS@1236,COG0397@1,COG0397@2
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size489
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.1415744-CDS-M-pyrifera_M_contig107633:129..6181622815586.1415744-CDS-M-pyrifera_M_contig107633:129..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107633 130..618 -
1692277475.747264-CDS-M-pyrifera_M_contig107633:129..6181692277475.747264-CDS-M-pyrifera_M_contig107633:129..618Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig107633 130..618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig107633.1626.1prot_M-pyrifera_M_contig107633.1626.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig107633 130..618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig107633.1626.1

>prot_M-pyrifera_M_contig107633.1626.1 ID=prot_M-pyrifera_M_contig107633.1626.1|Name=mRNA_M-pyrifera_M_contig107633.1626.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
DPDDQADRDLVEQITGILPAIETDMTLFFRGLAHVPGGSTDDDALLAPLL
DAYYSPDDLAGDVRDATLAWLRNYSARVTRDGRPDADRAAAMNRVNPKYV
LRNYLAQLAIDASEQGDHDMIGELLDVLRHPYDEQPGKERFAEKRPDWAR
TRAGCSMLSCSS*
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mRNA from alignment at M-pyrifera_M_contig107633:130..618-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig107633.1626.1 ID=mRNA_M-pyrifera_M_contig107633.1626.1|Name=mRNA_M-pyrifera_M_contig107633.1626.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig107633:130..618- (Macrocystis pyrifera P11B4 male)
GACCCCGACGATCAGGCCGACCGCGACCTCGTCGAGCAGATCACCGGCAT
CCTCCCGGCCATCGAAACCGACATGACACTGTTCTTCCGCGGACTGGCAC
ACGTCCCCGGTGGTTCAACCGACGACGATGCCCTGCTCGCTCCCCTGCTC
GACGCCTATTACTCCCCCGACGACCTGGCCGGCGACGTCCGCGACGCCAC
CCTGGCCTGGCTGCGCAACTACTCGGCCCGGGTCACGCGAGACGGGCGCC
CCGACGCCGACCGAGCCGCCGCGATGAACCGGGTCAACCCCAAGTACGTG
CTGCGCAACTATCTGGCCCAGCTCGCCATCGACGCGTCGGAGCAGGGCGA
CCACGACATGATCGGCGAACTGCTCGACGTCCTGCGGCACCCCTACGACG
AACAGCCCGGCAAGGAACGATTCGCCGAGAAGCGCCCCGACTGGGCCCGT
ACCCGAGCCGGTTGCTCGATGCTCAGCTGTTCTAGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig107633:130..618-

>mRNA_M-pyrifera_M_contig107633.1626.1 ID=mRNA_M-pyrifera_M_contig107633.1626.1|Name=mRNA_M-pyrifera_M_contig107633.1626.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig107633:130..618- (Macrocystis pyrifera P11B4 male)
GACCCCGACGATCAGGCCGACCGCGACCTCGTCGAGCAGATCACCGGCAT
CCTCCCGGCCATCGAAACCGACATGACACTGTTCTTCCGCGGACTGGCAC
ACGTCCCCGGTGGTTCAACCGACGACGATGCCCTGCTCGCTCCCCTGCTC
GACGCCTATTACTCCCCCGACGACCTGGCCGGCGACGTCCGCGACGCCAC
CCTGGCCTGGCTGCGCAACTACTCGGCCCGGGTCACGCGAGACGGGCGCC
CCGACGCCGACCGAGCCGCCGCGATGAACCGGGTCAACCCCAAGTACGTG
CTGCGCAACTATCTGGCCCAGCTCGCCATCGACGCGTCGGAGCAGGGCGA
CCACGACATGATCGGCGAACTGCTCGACGTCCTGCGGCACCCCTACGACG
AACAGCCCGGCAAGGAACGATTCGCCGAGAAGCGCCCCGACTGGGCCCGT
ACCCGAGCCGGTTGCTCGATGCTCAGCTGTTCTAGCTGAGACCCCGACGA
TCAGGCCGACCGCGACCTCGTCGAGCAGATCACCGGCATCCTCCCGGCCA
TCGAAACCGACATGACACTGTTCTTCCGCGGACTGGCACACGTCCCCGGT
GGTTCAACCGACGACGATGCCCTGCTCGCTCCCCTGCTCGACGCCTATTA
CTCCCCCGACGACCTGGCCGGCGACGTCCGCGACGCCACCCTGGCCTGGC
TGCGCAACTACTCGGCCCGGGTCACGCGAGACGGGCGCCCCGACGCCGAC
CGAGCCGCCGCGATGAACCGGGTCAACCCCAAGTACGTGCTGCGCAACTA
TCTGGCCCAGCTCGCCATCGACGCGTCGGAGCAGGGCGACCACGACATGA
TCGGCGAACTGCTCGACGTCCTGCGGCACCCCTACGACGAACAGCCCGGC
AAGGAACGATTCGCCGAGAAGCGCCCCGACTGGGCCCGTACCCGAGCCGG
TTGCTCGATGCTCAGCTGTTCTAGCTGA
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